data_6R42 # _model_server_result.job_id fItygQ8JhujowPYhWo7lNA _model_server_result.datetime_utc '2024-11-01 22:27:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6r42 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 6R42 # _exptl.entry_id 6R42 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 519.571 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Piperacillin (Open Form)' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6R42 _cell.length_a 68.44 _cell.length_b 82.64 _cell.length_c 88.76 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6R42 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H29 N5 O7 S' _chem_comp.formula_weight 519.571 _chem_comp.id JPP _chem_comp.mon_nstd_flag . _chem_comp.name 'Piperacillin (Open Form)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O03 C04 JPP doub 173 n n O01 C01 JPP doub 174 n n O02 C04 JPP sing 175 n n C04 C18 JPP sing 176 n n O04 C06 JPP doub 177 n n C01 C20 JPP sing 178 n n C18 N02 JPP sing 179 n n C18 C19 JPP sing 180 n n C07 C12 JPP doub 181 n y C07 C05 JPP sing 182 n y C12 C16 JPP sing 183 n y C09 C10 JPP sing 184 n n C09 N01 JPP sing 185 n n C03 C19 JPP sing 186 n n N02 C17 JPP sing 187 n n N03 C20 JPP sing 188 n n N03 C21 JPP sing 189 n n C06 N01 JPP sing 190 n n C06 N04 JPP sing 191 n n C10 N JPP sing 192 n n CA C05 JPP sing 193 n n CA C21 JPP sing 194 n n CA N04 JPP sing 195 n n C19 C02 JPP sing 196 n n C19 S JPP sing 197 n n C20 C17 JPP sing 198 n n C05 C08 JPP doub 199 n y N01 C11 JPP sing 200 n n C16 C13 JPP doub 201 n y C21 O06 JPP doub 202 n n C17 S JPP sing 203 n n C08 C13 JPP sing 204 n y N C15 JPP sing 205 n n N C14 JPP sing 206 n n C11 O05 JPP doub 207 n n C11 C14 JPP sing 208 n n C C15 JPP sing 209 n n C14 O JPP doub 210 n n O02 H1 JPP sing 211 n n N02 H2 JPP sing 212 n n N03 H4 JPP sing 213 n n N04 H5 JPP sing 214 n n C17 H6 JPP sing 215 n n C18 H7 JPP sing 216 n n C20 H8 JPP sing 217 n n C01 H9 JPP sing 218 n n C02 H10 JPP sing 219 n n C02 H11 JPP sing 220 n n C02 H12 JPP sing 221 n n C03 H13 JPP sing 222 n n C03 H14 JPP sing 223 n n C03 H15 JPP sing 224 n n CA H16 JPP sing 225 n n C07 H17 JPP sing 226 n n C08 H18 JPP sing 227 n n C09 H19 JPP sing 228 n n C09 H20 JPP sing 229 n n C10 H21 JPP sing 230 n n C10 H22 JPP sing 231 n n C12 H23 JPP sing 232 n n C13 H24 JPP sing 233 n n C15 H25 JPP sing 234 n n C15 H26 JPP sing 235 n n C16 H27 JPP sing 236 n n C H28 JPP sing 237 n n C H29 JPP sing 238 n n C H30 JPP sing 239 n n # _atom_sites.entry_id 6R42 _atom_sites.fract_transf_matrix[1][1] 0.014611 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012101 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011266 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JPP A 1 701 701 JPP EPP . C 3 HOH A 1 801 153 HOH HOH . C 3 HOH A 2 802 119 HOH HOH . C 3 HOH A 3 803 133 HOH HOH . C 3 HOH A 4 804 167 HOH HOH . C 3 HOH A 5 805 123 HOH HOH . C 3 HOH A 6 806 100 HOH HOH . C 3 HOH A 7 807 121 HOH HOH . C 3 HOH A 8 808 156 HOH HOH . C 3 HOH A 9 809 132 HOH HOH . C 3 HOH A 10 810 78 HOH HOH . C 3 HOH A 11 811 76 HOH HOH . C 3 HOH A 12 812 166 HOH HOH . C 3 HOH A 13 813 159 HOH HOH . C 3 HOH A 14 814 144 HOH HOH . C 3 HOH A 15 815 161 HOH HOH . C 3 HOH A 16 816 66 HOH HOH . C 3 HOH A 17 817 96 HOH HOH . C 3 HOH A 18 818 28 HOH HOH . C 3 HOH A 19 819 99 HOH HOH . C 3 HOH A 20 820 64 HOH HOH . C 3 HOH A 21 821 118 HOH HOH . C 3 HOH A 22 822 109 HOH HOH . C 3 HOH A 23 823 5 HOH HOH . C 3 HOH A 24 824 116 HOH HOH . C 3 HOH A 25 825 136 HOH HOH . C 3 HOH A 26 826 125 HOH HOH . C 3 HOH A 27 827 115 HOH HOH . C 3 HOH A 28 828 104 HOH HOH . C 3 HOH A 29 829 73 HOH HOH . C 3 HOH A 30 830 106 HOH HOH . C 3 HOH A 31 831 173 HOH HOH . C 3 HOH A 32 832 120 HOH HOH . C 3 HOH A 33 833 174 HOH HOH . C 3 HOH A 34 834 155 HOH HOH . C 3 HOH A 35 835 150 HOH HOH . C 3 HOH A 36 836 4 HOH HOH . C 3 HOH A 37 837 103 HOH HOH . C 3 HOH A 38 838 154 HOH HOH . C 3 HOH A 39 839 17 HOH HOH . C 3 HOH A 40 840 111 HOH HOH . C 3 HOH A 41 841 13 HOH HOH . C 3 HOH A 42 842 22 HOH HOH . C 3 HOH A 43 843 62 HOH HOH . C 3 HOH A 44 844 145 HOH HOH . C 3 HOH A 45 845 112 HOH HOH . C 3 HOH A 46 846 140 HOH HOH . C 3 HOH A 47 847 79 HOH HOH . C 3 HOH A 48 848 97 HOH HOH . C 3 HOH A 49 849 151 HOH HOH . C 3 HOH A 50 850 71 HOH HOH . C 3 HOH A 51 851 63 HOH HOH . C 3 HOH A 52 852 67 HOH HOH . C 3 HOH A 53 853 172 HOH HOH . C 3 HOH A 54 854 95 HOH HOH . C 3 HOH A 55 855 41 HOH HOH . C 3 HOH A 56 856 158 HOH HOH . C 3 HOH A 57 857 72 HOH HOH . C 3 HOH A 58 858 137 HOH HOH . C 3 HOH A 59 859 98 HOH HOH . C 3 HOH A 60 860 114 HOH HOH . C 3 HOH A 61 861 139 HOH HOH . C 3 HOH A 62 862 9 HOH HOH . C 3 HOH A 63 863 101 HOH HOH . C 3 HOH A 64 864 30 HOH HOH . C 3 HOH A 65 865 113 HOH HOH . C 3 HOH A 66 866 147 HOH HOH . C 3 HOH A 67 867 134 HOH HOH . C 3 HOH A 68 868 91 HOH HOH . C 3 HOH A 69 869 26 HOH HOH . C 3 HOH A 70 870 15 HOH HOH . C 3 HOH A 71 871 146 HOH HOH . C 3 HOH A 72 872 102 HOH HOH . C 3 HOH A 73 873 82 HOH HOH . C 3 HOH A 74 874 135 HOH HOH . C 3 HOH A 75 875 108 HOH HOH . C 3 HOH A 76 876 168 HOH HOH . C 3 HOH A 77 877 44 HOH HOH . C 3 HOH A 78 878 12 HOH HOH . C 3 HOH A 79 879 107 HOH HOH . C 3 HOH A 80 880 138 HOH HOH . C 3 HOH A 81 881 11 HOH HOH . C 3 HOH A 82 882 128 HOH HOH . C 3 HOH A 83 883 93 HOH HOH . C 3 HOH A 84 884 141 HOH HOH . C 3 HOH A 85 885 80 HOH HOH . C 3 HOH A 86 886 169 HOH HOH . C 3 HOH A 87 887 25 HOH HOH . C 3 HOH A 88 888 130 HOH HOH . C 3 HOH A 89 889 143 HOH HOH . C 3 HOH A 90 890 170 HOH HOH . C 3 HOH A 91 891 171 HOH HOH . C 3 HOH A 92 892 163 HOH HOH . C 3 HOH A 93 893 61 HOH HOH . C 3 HOH A 94 894 149 HOH HOH . C 3 HOH A 95 895 124 HOH HOH . C 3 HOH A 96 896 148 HOH HOH . C 3 HOH A 97 897 110 HOH HOH . C 3 HOH A 98 898 131 HOH HOH . C 3 HOH A 99 899 117 HOH HOH . C 3 HOH A 100 900 56 HOH HOH . C 3 HOH A 101 901 165 HOH HOH . C 3 HOH A 102 902 157 HOH HOH . C 3 HOH A 103 903 58 HOH HOH . C 3 HOH A 104 904 127 HOH HOH . C 3 HOH A 105 905 19 HOH HOH . C 3 HOH A 106 906 176 HOH HOH . C 3 HOH A 107 907 48 HOH HOH . C 3 HOH A 108 908 60 HOH HOH . C 3 HOH A 109 909 126 HOH HOH . C 3 HOH A 110 910 160 HOH HOH . C 3 HOH A 111 911 164 HOH HOH . C 3 HOH A 112 912 122 HOH HOH . C 3 HOH A 113 913 75 HOH HOH . C 3 HOH A 114 914 175 HOH HOH . C 3 HOH A 115 915 162 HOH HOH . C 3 HOH A 116 916 105 HOH HOH . C 3 HOH A 117 917 129 HOH HOH . C 3 HOH A 118 918 152 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S JPP . . . B 2 3.881 39.75 18.135 1 24.89 ? S JPP 701 A 1 HETATM 2 O O01 JPP . . . B 2 5.682 36.116 16.115 1 19.67 ? O01 JPP 701 A 1 HETATM 3 O O02 JPP . . . B 2 1.012 37.349 15.319 1 23.91 ? O02 JPP 701 A 1 HETATM 4 O O03 JPP . . . B 2 1.08 36.51 17.23 1 23.24 ? O03 JPP 701 A 1 HETATM 5 O O06 JPP . . . B 2 7.43 40.073 17.757 1 22.11 ? O06 JPP 701 A 1 HETATM 6 O O04 JPP . . . B 2 9.558 40.42 13.722 1 21.96 ? O04 JPP 701 A 1 HETATM 7 O O05 JPP . . . B 2 10.821 41.127 17.285 1 24.49 ? O05 JPP 701 A 1 HETATM 8 O O JPP . . . B 2 13.355 41.079 17.735 1 29.02 ? O JPP 701 A 1 HETATM 9 N N02 JPP . . . B 2 3.487 37.203 17.704 1 24.33 ? N02 JPP 701 A 1 HETATM 10 N N03 JPP . . . B 2 6.224 38.624 16.611 1 22.57 ? N03 JPP 701 A 1 HETATM 11 N N04 JPP . . . B 2 8.948 40.797 15.705 1 22.46 ? N04 JPP 701 A 1 HETATM 12 N N01 JPP . . . B 2 11.16 40.793 15.112 1 24.14 ? N01 JPP 701 A 1 HETATM 13 N N JPP . . . B 2 13.813 40.982 15.609 1 25.39 ? N JPP 701 A 1 HETATM 14 C C17 JPP . . . B 2 4.462 38.077 18.305 1 23.62 ? C17 JPP 701 A 1 HETATM 15 C C19 JPP . . . B 2 2.49 39.349 17.179 1 24.45 ? C19 JPP 701 A 1 HETATM 16 C C18 JPP . . . B 2 2.787 37.926 16.679 1 23.98 ? C18 JPP 701 A 1 HETATM 17 C C20 JPP . . . B 2 5.823 37.738 17.702 1 23.47 ? C20 JPP 701 A 1 HETATM 18 C C01 JPP . . . B 2 5.783 36.276 17.288 1 22.3 ? C01 JPP 701 A 1 HETATM 19 C C02 JPP . . . B 2 2.273 40.305 16.025 1 25.95 ? C02 JPP 701 A 1 HETATM 20 C C03 JPP . . . B 2 1.316 39.398 18.112 1 24.82 ? C03 JPP 701 A 1 HETATM 21 C C04 JPP . . . B 2 1.527 37.203 16.385 1 24.03 ? C04 JPP 701 A 1 HETATM 22 C C21 JPP . . . B 2 7.052 39.669 16.731 1 23.84 ? C21 JPP 701 A 1 HETATM 23 C CA JPP . . . B 2 7.575 40.361 15.507 1 23.49 ? CA JPP 701 A 1 HETATM 24 C C05 JPP . . . B 2 6.687 41.479 15.125 1 24.76 ? C05 JPP 701 A 1 HETATM 25 C C06 JPP . . . B 2 9.869 40.668 14.829 1 23.58 ? C06 JPP 701 A 1 HETATM 26 C C07 JPP . . . B 2 6.942 42.752 15.504 1 25 ? C07 JPP 701 A 1 HETATM 27 C C08 JPP . . . B 2 5.552 41.297 14.41 1 25.19 ? C08 JPP 701 A 1 HETATM 28 C C09 JPP . . . B 2 12.033 40.714 13.994 1 24.65 ? C09 JPP 701 A 1 HETATM 29 C C10 JPP . . . B 2 13.514 40.733 14.273 1 25.65 ? C10 JPP 701 A 1 HETATM 30 C C11 JPP . . . B 2 11.546 40.978 16.34 1 25.12 ? C11 JPP 701 A 1 HETATM 31 C C12 JPP . . . B 2 6.125 43.79 15.141 1 26.2 ? C12 JPP 701 A 1 HETATM 32 C C13 JPP . . . B 2 4.705 42.334 14.064 1 25.57 ? C13 JPP 701 A 1 HETATM 33 C C14 JPP . . . B 2 12.98 41.026 16.602 1 26.07 ? C14 JPP 701 A 1 HETATM 34 C C15 JPP . . . B 2 15.211 41.209 15.769 1 26.63 ? C15 JPP 701 A 1 HETATM 35 C C16 JPP . . . B 2 4.982 43.601 14.428 1 25.75 ? C16 JPP 701 A 1 HETATM 36 C C JPP . . . B 2 15.894 39.912 15.991 1 26.49 ? C JPP 701 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 36 #