data_6R49
#
_model_server_result.job_id            I79xnl23Bja6sgqzpt-WNA 
_model_server_result.datetime_utc      '2024-11-22 20:58:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6r49 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    6R49 
#
_exptl.entry_id    6R49 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6R49 
_cell.length_a            82.272 
_cell.length_b            82.272 
_cell.length_c            174.043 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6R49 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 143 A ASN 261 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? 
metalc ? metalc2 A OD2 ASP 156 A ASP 274 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
metalc ? metalc3 A OD1 ASP 156 A ASP 274 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? 
metalc ? metalc4 B O3B ADP . A ADP 501 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
metalc ? metalc5 B O2A ADP . A ADP 501 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
metalc ? metalc6 B O1B ADP . A ADP 501 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? 
metalc ? metalc7 C MG MG . A MG 502 1_555 F O HOH . A HOH 639 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? 
metalc ? metalc8 C MG MG . A MG 502 1_555 F O HOH . A HOH 656 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? 
metalc ? metalc9 D MG MG . A MG 503 1_555 F O HOH . A HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? 
metalc ? metalc10 D MG MG . A MG 503 1_555 F O HOH . A HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
metalc ? metalc11 D MG MG . A MG 503 1_555 F O HOH . A HOH 670 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     6R49 
_atom_sites.fract_transf_matrix[1][1]    0.012155 
_atom_sites.fract_transf_matrix[1][2]    0.007018 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014035 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005746 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ADP A 1 501 1392 ADP ADP . 
C 3 MG A 1 502 1395 MG MG . 
D 3 MG A 1 503 1396 MG MG . 
E 4 JSB A 1 504 2101 JSB LIG . 
F 5 HOH A 1 601 36 HOH HOH . 
F 5 HOH A 2 602 41 HOH HOH . 
F 5 HOH A 3 603 59 HOH HOH . 
F 5 HOH A 4 604 43 HOH HOH . 
F 5 HOH A 5 605 37 HOH HOH . 
F 5 HOH A 6 606 45 HOH HOH . 
F 5 HOH A 7 607 4 HOH HOH . 
F 5 HOH A 8 608 27 HOH HOH . 
F 5 HOH A 9 609 46 HOH HOH . 
F 5 HOH A 10 610 9 HOH HOH . 
F 5 HOH A 11 611 63 HOH HOH . 
F 5 HOH A 12 612 17 HOH HOH . 
F 5 HOH A 13 613 21 HOH HOH . 
F 5 HOH A 14 614 18 HOH HOH . 
F 5 HOH A 15 615 70 HOH HOH . 
F 5 HOH A 16 616 7 HOH HOH . 
F 5 HOH A 17 617 28 HOH HOH . 
F 5 HOH A 18 618 52 HOH HOH . 
F 5 HOH A 19 619 55 HOH HOH . 
F 5 HOH A 20 620 34 HOH HOH . 
F 5 HOH A 21 621 51 HOH HOH . 
F 5 HOH A 22 622 10 HOH HOH . 
F 5 HOH A 23 623 13 HOH HOH . 
F 5 HOH A 24 624 42 HOH HOH . 
F 5 HOH A 25 625 1 HOH HOH . 
F 5 HOH A 26 626 29 HOH HOH . 
F 5 HOH A 27 627 14 HOH HOH . 
F 5 HOH A 28 628 3 HOH HOH . 
F 5 HOH A 29 629 62 HOH HOH . 
F 5 HOH A 30 630 31 HOH HOH . 
F 5 HOH A 31 631 47 HOH HOH . 
F 5 HOH A 32 632 57 HOH HOH . 
F 5 HOH A 33 633 2 HOH HOH . 
F 5 HOH A 34 634 5 HOH HOH . 
F 5 HOH A 35 635 32 HOH HOH . 
F 5 HOH A 36 636 22 HOH HOH . 
F 5 HOH A 37 637 64 HOH HOH . 
F 5 HOH A 38 638 40 HOH HOH . 
F 5 HOH A 39 639 25 HOH HOH . 
F 5 HOH A 40 640 68 HOH HOH . 
F 5 HOH A 41 641 23 HOH HOH . 
F 5 HOH A 42 642 48 HOH HOH . 
F 5 HOH A 43 643 65 HOH HOH . 
F 5 HOH A 44 644 15 HOH HOH . 
F 5 HOH A 45 645 30 HOH HOH . 
F 5 HOH A 46 646 33 HOH HOH . 
F 5 HOH A 47 647 11 HOH HOH . 
F 5 HOH A 48 648 12 HOH HOH . 
F 5 HOH A 49 649 19 HOH HOH . 
F 5 HOH A 50 650 8 HOH HOH . 
F 5 HOH A 51 651 60 HOH HOH . 
F 5 HOH A 52 652 50 HOH HOH . 
F 5 HOH A 53 653 53 HOH HOH . 
F 5 HOH A 54 654 61 HOH HOH . 
F 5 HOH A 55 655 69 HOH HOH . 
F 5 HOH A 56 656 24 HOH HOH . 
F 5 HOH A 57 657 26 HOH HOH . 
F 5 HOH A 58 658 20 HOH HOH . 
F 5 HOH A 59 659 35 HOH HOH . 
F 5 HOH A 60 660 54 HOH HOH . 
F 5 HOH A 61 661 16 HOH HOH . 
F 5 HOH A 62 662 6 HOH HOH . 
F 5 HOH A 63 663 58 HOH HOH . 
F 5 HOH A 64 664 72 HOH HOH . 
F 5 HOH A 65 665 66 HOH HOH . 
F 5 HOH A 66 666 49 HOH HOH . 
F 5 HOH A 67 667 38 HOH HOH . 
F 5 HOH A 68 668 67 HOH HOH . 
F 5 HOH A 69 669 73 HOH HOH . 
F 5 HOH A 70 670 39 HOH HOH . 
F 5 HOH A 71 671 44 HOH HOH . 
F 5 HOH A 72 672 56 HOH HOH . 
F 5 HOH A 73 673 71 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . B 2 -11.901 24.186 -5.733 1 37.61 ? PB ADP 501 A 1 
HETATM 2 O O1B ADP . . . B 2 -12.595 23.826 -7.015 1 39.63 ? O1B ADP 501 A 1 
HETATM 3 O O2B ADP . . . B 2 -11.344 22.993 -5.012 1 36.71 ? O2B ADP 501 A 1 
HETATM 4 O O3B ADP . . . B 2 -12.621 25.184 -4.854 1 40.36 ? O3B ADP 501 A 1 
HETATM 5 P PA ADP . . . B 2 -10.429 26.428 -6.798 1 35.67 ? PA ADP 501 A 1 
HETATM 6 O O1A ADP . . . B 2 -10.128 26.341 -8.273 1 41.27 ? O1A ADP 501 A 1 
HETATM 7 O O2A ADP . . . B 2 -11.513 27.362 -6.315 1 35.53 ? O2A ADP 501 A 1 
HETATM 8 O O3A ADP . . . B 2 -10.543 24.958 -6.158 1 36.26 ? O3A ADP 501 A 1 
HETATM 9 O O5' ADP . . . B 2 -9.046 26.928 -6.095 1 42.51 ? O5' ADP 501 A 1 
HETATM 10 C C5' ADP . . . B 2 -8.857 26.817 -4.673 1 33.38 ? C5' ADP 501 A 1 
HETATM 11 C C4' ADP . . . B 2 -8.09 28.048 -4.171 1 37.39 ? C4' ADP 501 A 1 
HETATM 12 O O4' ADP . . . B 2 -6.785 28.15 -4.767 1 35.04 ? O4' ADP 501 A 1 
HETATM 13 C C3' ADP . . . B 2 -8.78 29.362 -4.545 1 34.39 ? C3' ADP 501 A 1 
HETATM 14 O O3' ADP . . . B 2 -9.801 29.735 -3.614 1 35.58 ? O3' ADP 501 A 1 
HETATM 15 C C2' ADP . . . B 2 -7.643 30.361 -4.57 1 31.82 ? C2' ADP 501 A 1 
HETATM 16 O O2' ADP . . . B 2 -7.325 30.739 -3.227 1 37.27 ? O2' ADP 501 A 1 
HETATM 17 C C1' ADP . . . B 2 -6.49 29.524 -5.085 1 34.94 ? C1' ADP 501 A 1 
HETATM 18 N N9 ADP . . . B 2 -6.411 29.675 -6.555 1 34.2 ? N9 ADP 501 A 1 
HETATM 19 C C8 ADP . . . B 2 -7.082 28.9 -7.43 1 32.19 ? C8 ADP 501 A 1 
HETATM 20 N N7 ADP . . . B 2 -6.811 29.263 -8.703 1 33.79 ? N7 ADP 501 A 1 
HETATM 21 C C5 ADP . . . B 2 -5.94 30.291 -8.658 1 34.77 ? C5 ADP 501 A 1 
HETATM 22 C C6 ADP . . . B 2 -5.244 31.14 -9.659 1 32.11 ? C6 ADP 501 A 1 
HETATM 23 N N6 ADP . . . B 2 -5.428 30.946 -10.991 1 35.28 ? N6 ADP 501 A 1 
HETATM 24 N N1 ADP . . . B 2 -4.424 32.107 -9.199 1 34.89 ? N1 ADP 501 A 1 
HETATM 25 C C2 ADP . . . B 2 -4.235 32.301 -7.884 1 33.12 ? C2 ADP 501 A 1 
HETATM 26 N N3 ADP . . . B 2 -4.823 31.57 -6.927 1 32.09 ? N3 ADP 501 A 1 
HETATM 27 C C4 ADP . . . B 2 -5.679 30.564 -7.239 1 34.38 ? C4 ADP 501 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           27 
#