data_6R4B # _model_server_result.job_id foTkvAdnu67nNOHmlYxGqQ _model_server_result.datetime_utc '2024-10-10 09:26:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6r4b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":508}' # _entry.id 6R4B # _exptl.entry_id 6R4B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 295.285 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (6~{S})-6-[2,4-bis(fluoranyl)phenyl]-~{N},~{N},4-trimethyl-2-oxidanylidene-5,6-dihydro-1~{H}-pyrimidine-5-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6R4B _cell.length_a 81.851 _cell.length_b 81.851 _cell.length_c 174.371 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6R4B _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 169 A THR 287 1_555 A N TPO 170 A TPO 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C TPO 170 A TPO 288 1_555 A N LEU 171 A LEU 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? metalc ? metalc1 A OD1 ASN 143 A ASN 261 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc2 A OD2 ASP 156 A ASP 274 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc3 A OD1 ASP 156 A ASP 274 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc4 B O3B ADP . A ADP 501 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc5 B O2A ADP . A ADP 501 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc6 B O1B ADP . A ADP 501 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc7 C MG MG . A MG 502 1_555 J O HOH . A HOH 622 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.813 ? metalc ? metalc8 C MG MG . A MG 502 1_555 J O HOH . A HOH 632 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc9 D MG MG . A MG 503 1_555 J O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.869 ? metalc ? metalc10 D MG MG . A MG 503 1_555 J O HOH . A HOH 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.872 ? # _chem_comp.formula 'C14 H15 F2 N3 O2' _chem_comp.formula_weight 295.285 _chem_comp.id JSN _chem_comp.mon_nstd_flag . _chem_comp.name (6~{S})-6-[2,4-bis(fluoranyl)phenyl]-~{N},~{N},4-trimethyl-2-oxidanylidene-5,6-dihydro-1~{H}-pyrimidine-5-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 JSN sing 217 n n N1 C2 JSN doub 218 n n N1 C14 JSN sing 219 n n C2 C3 JSN sing 220 n n O1 C4 JSN doub 221 n n O2 C14 JSN doub 222 n n C14 N3 JSN sing 223 n n C3 C4 JSN sing 224 n n C3 C7 JSN sing 225 n n C4 N2 JSN sing 226 n n N3 C7 JSN sing 227 n n N2 C5 JSN sing 228 n n N2 C6 JSN sing 229 n n C7 C8 JSN sing 230 n n C9 C8 JSN doub 231 n y C9 C10 JSN sing 232 n y C8 C13 JSN sing 233 n y C10 C11 JSN doub 234 n y C13 F2 JSN sing 235 n n C13 C12 JSN doub 236 n y C11 C12 JSN sing 237 n y C11 F1 JSN sing 238 n n N3 H1 JSN sing 239 n n C5 H2 JSN sing 240 n n C5 H3 JSN sing 241 n n C5 H4 JSN sing 242 n n C6 H5 JSN sing 243 n n C6 H6 JSN sing 244 n n C6 H7 JSN sing 245 n n C7 H8 JSN sing 246 n n C10 H9 JSN sing 247 n n C1 H10 JSN sing 248 n n C1 H11 JSN sing 249 n n C1 H12 JSN sing 250 n n C3 H13 JSN sing 251 n n C9 H14 JSN sing 252 n n C12 H15 JSN sing 253 n n # _atom_sites.entry_id 6R4B _atom_sites.fract_transf_matrix[1][1] 0.012217 _atom_sites.fract_transf_matrix[1][2] 0.007054 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014107 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005735 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 501 1392 ADP ADP . C 3 MG A 1 502 1395 MG MG . D 3 MG A 1 503 1396 MG MG . E 4 CL A 1 504 1397 CL CL . F 4 CL A 1 505 1398 CL CL . G 4 CL A 1 506 1399 CL CL . H 4 CL A 1 507 1400 CL CL . I 5 JSN A 1 508 1 JSN LIG . J 6 HOH A 1 601 53 HOH HOH . J 6 HOH A 2 602 34 HOH HOH . J 6 HOH A 3 603 22 HOH HOH . J 6 HOH A 4 604 17 HOH HOH . J 6 HOH A 5 605 19 HOH HOH . J 6 HOH A 6 606 30 HOH HOH . J 6 HOH A 7 607 9 HOH HOH . J 6 HOH A 8 608 23 HOH HOH . J 6 HOH A 9 609 40 HOH HOH . J 6 HOH A 10 610 24 HOH HOH . J 6 HOH A 11 611 43 HOH HOH . J 6 HOH A 12 612 38 HOH HOH . J 6 HOH A 13 613 11 HOH HOH . J 6 HOH A 14 614 6 HOH HOH . J 6 HOH A 15 615 26 HOH HOH . J 6 HOH A 16 616 13 HOH HOH . J 6 HOH A 17 617 56 HOH HOH . J 6 HOH A 18 618 54 HOH HOH . J 6 HOH A 19 619 20 HOH HOH . J 6 HOH A 20 620 35 HOH HOH . J 6 HOH A 21 621 12 HOH HOH . J 6 HOH A 22 622 44 HOH HOH . J 6 HOH A 23 623 15 HOH HOH . J 6 HOH A 24 624 8 HOH HOH . J 6 HOH A 25 625 27 HOH HOH . J 6 HOH A 26 626 1 HOH HOH . J 6 HOH A 27 627 55 HOH HOH . J 6 HOH A 28 628 18 HOH HOH . J 6 HOH A 29 629 14 HOH HOH . J 6 HOH A 30 630 7 HOH HOH . J 6 HOH A 31 631 32 HOH HOH . J 6 HOH A 32 632 52 HOH HOH . J 6 HOH A 33 633 5 HOH HOH . J 6 HOH A 34 634 60 HOH HOH . J 6 HOH A 35 635 36 HOH HOH . J 6 HOH A 36 636 28 HOH HOH . J 6 HOH A 37 637 16 HOH HOH . J 6 HOH A 38 638 58 HOH HOH . J 6 HOH A 39 639 2 HOH HOH . J 6 HOH A 40 640 49 HOH HOH . J 6 HOH A 41 641 37 HOH HOH . J 6 HOH A 42 642 4 HOH HOH . J 6 HOH A 43 643 21 HOH HOH . J 6 HOH A 44 644 25 HOH HOH . J 6 HOH A 45 645 59 HOH HOH . J 6 HOH A 46 646 42 HOH HOH . J 6 HOH A 47 647 45 HOH HOH . J 6 HOH A 48 648 10 HOH HOH . J 6 HOH A 49 649 41 HOH HOH . J 6 HOH A 50 650 39 HOH HOH . J 6 HOH A 51 651 51 HOH HOH . J 6 HOH A 52 652 3 HOH HOH . J 6 HOH A 53 653 31 HOH HOH . J 6 HOH A 54 654 48 HOH HOH . J 6 HOH A 55 655 57 HOH HOH . J 6 HOH A 56 656 33 HOH HOH . J 6 HOH A 57 657 29 HOH HOH . J 6 HOH A 58 658 47 HOH HOH . J 6 HOH A 59 659 46 HOH HOH . J 6 HOH A 60 660 61 HOH HOH . J 6 HOH A 61 661 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 JSN . B . I 5 -9.715 11.161 -21.126 0.92 100.63 ? N1 JSN 508 A 1 HETATM 2 N N3 JSN . B . I 5 -9.534 10.84 -18.859 0.92 99.68 ? N3 JSN 508 A 1 HETATM 3 C C4 JSN . B . I 5 -10.506 14.506 -19.583 0.92 88.23 ? C4 JSN 508 A 1 HETATM 4 C C5 JSN . B . I 5 -10.687 16.579 -18.408 0.92 77.63 ? C5 JSN 508 A 1 HETATM 5 C C6 JSN . B . I 5 -8.802 15.184 -17.805 0.92 86.24 ? C6 JSN 508 A 1 HETATM 6 C C7 JSN . B . I 5 -9.738 12.253 -18.527 0.92 98.09 ? C7 JSN 508 A 1 HETATM 7 C C8 JSN . B . I 5 -10.722 12.404 -17.368 0.92 94 ? C8 JSN 508 A 1 HETATM 8 C C10 JSN . B . I 5 -12.877 13.009 -16.498 0.92 93.65 ? C10 JSN 508 A 1 HETATM 9 C C13 JSN . B . I 5 -10.314 12.108 -16.081 0.92 88.86 ? C13 JSN 508 A 1 HETATM 10 C C1 JSN . B . I 5 -10.137 13.188 -22.326 0.92 88.57 ? C1 JSN 508 A 1 HETATM 11 C C2 JSN . B . I 5 -9.991 12.512 -20.998 0.92 95.09 ? C2 JSN 508 A 1 HETATM 12 C C3 JSN . B . I 5 -10.068 13.085 -19.761 0.92 95.49 ? C3 JSN 508 A 1 HETATM 13 N N2 JSN . B . I 5 -9.995 15.317 -18.632 0.92 83.66 ? N2 JSN 508 A 1 HETATM 14 O O1 JSN . B . I 5 -11.381 14.961 -20.326 0.92 83.64 ? O1 JSN 508 A 1 HETATM 15 C C9 JSN . B . I 5 -12.021 12.853 -17.572 0.92 95.27 ? C9 JSN 508 A 1 HETATM 16 C C11 JSN . B . I 5 -12.426 12.698 -15.245 0.92 90.45 ? C11 JSN 508 A 1 HETATM 17 F F1 JSN . B . I 5 -13.261 12.846 -14.186 0.92 92.53 ? F1 JSN 508 A 1 HETATM 18 C C12 JSN . B . I 5 -11.156 12.242 -15.008 0.92 88.11 ? C12 JSN 508 A 1 HETATM 19 F F2 JSN . B . I 5 -9.06 11.659 -15.853 0.92 89.7 ? F2 JSN 508 A 1 HETATM 20 C C14 JSN . B . I 5 -9.512 10.306 -20.079 0.92 100.87 ? C14 JSN 508 A 1 HETATM 21 O O2 JSN . B . I 5 -9.311 9.115 -20.28 0.92 101.52 ? O2 JSN 508 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 21 #