data_6R4C # _model_server_result.job_id RGo4Xyxj9k93bCLJRxOdzw _model_server_result.datetime_utc '2024-10-10 09:32:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6r4c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6R4C # _exptl.entry_id 6R4C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6R4C _cell.length_a 81.586 _cell.length_b 81.586 _cell.length_c 175.625 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6R4C _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 143 A ASN 261 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc2 A OD1 ASP 156 A ASP 274 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc3 A OD2 ASP 156 A ASP 274 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? covale ? covale1 A C THR 169 A THR 287 1_555 A N TPO 170 A TPO 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C TPO 170 A TPO 288 1_555 A N LEU 171 A LEU 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc4 B O1B ADP . A ADP 501 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc5 B O3B ADP . A ADP 501 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc6 B O2A ADP . A ADP 501 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc7 C MG MG . A MG 502 1_555 I O HOH . A HOH 654 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc8 C MG MG . A MG 502 1_555 I O HOH . A HOH 676 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc9 D MG MG . A MG 503 1_555 I O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc10 D MG MG . A MG 503 1_555 I O HOH . A HOH 627 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc11 D MG MG . A MG 503 1_555 I O HOH . A HOH 683 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.872 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6R4C _atom_sites.fract_transf_matrix[1][1] 0.012257 _atom_sites.fract_transf_matrix[1][2] 0.007077 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014153 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005694 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 501 1392 ADP ADP . C 3 MG A 1 502 1395 MG MG . D 3 MG A 1 503 1396 MG MG . E 4 CL A 1 504 1397 CL CL . F 4 CL A 1 505 1398 CL CL . G 4 CL A 1 506 1399 CL CL . H 5 JRQ A 1 507 2 JRQ LIG . I 6 HOH A 1 601 41 HOH HOH . I 6 HOH A 2 602 5 HOH HOH . I 6 HOH A 3 603 81 HOH HOH . I 6 HOH A 4 604 76 HOH HOH . I 6 HOH A 5 605 82 HOH HOH . I 6 HOH A 6 606 25 HOH HOH . I 6 HOH A 7 607 54 HOH HOH . I 6 HOH A 8 608 11 HOH HOH . I 6 HOH A 9 609 58 HOH HOH . I 6 HOH A 10 610 18 HOH HOH . I 6 HOH A 11 611 74 HOH HOH . I 6 HOH A 12 612 68 HOH HOH . I 6 HOH A 13 613 75 HOH HOH . I 6 HOH A 14 614 62 HOH HOH . I 6 HOH A 15 615 20 HOH HOH . I 6 HOH A 16 616 44 HOH HOH . I 6 HOH A 17 617 49 HOH HOH . I 6 HOH A 18 618 19 HOH HOH . I 6 HOH A 19 619 1 HOH HOH . I 6 HOH A 20 620 23 HOH HOH . I 6 HOH A 21 621 59 HOH HOH . I 6 HOH A 22 622 66 HOH HOH . I 6 HOH A 23 623 7 HOH HOH . I 6 HOH A 24 624 14 HOH HOH . I 6 HOH A 25 625 83 HOH HOH . I 6 HOH A 26 626 79 HOH HOH . I 6 HOH A 27 627 30 HOH HOH . I 6 HOH A 28 628 24 HOH HOH . I 6 HOH A 29 629 36 HOH HOH . I 6 HOH A 30 630 16 HOH HOH . I 6 HOH A 31 631 47 HOH HOH . I 6 HOH A 32 632 50 HOH HOH . I 6 HOH A 33 633 78 HOH HOH . I 6 HOH A 34 634 6 HOH HOH . I 6 HOH A 35 635 34 HOH HOH . I 6 HOH A 36 636 10 HOH HOH . I 6 HOH A 37 637 33 HOH HOH . I 6 HOH A 38 638 26 HOH HOH . I 6 HOH A 39 639 69 HOH HOH . I 6 HOH A 40 640 70 HOH HOH . I 6 HOH A 41 641 21 HOH HOH . I 6 HOH A 42 642 35 HOH HOH . I 6 HOH A 43 643 55 HOH HOH . I 6 HOH A 44 644 53 HOH HOH . I 6 HOH A 45 645 32 HOH HOH . I 6 HOH A 46 646 4 HOH HOH . I 6 HOH A 47 647 39 HOH HOH . I 6 HOH A 48 648 22 HOH HOH . I 6 HOH A 49 649 8 HOH HOH . I 6 HOH A 50 650 52 HOH HOH . I 6 HOH A 51 651 64 HOH HOH . I 6 HOH A 52 652 65 HOH HOH . I 6 HOH A 53 653 13 HOH HOH . I 6 HOH A 54 654 27 HOH HOH . I 6 HOH A 55 655 60 HOH HOH . I 6 HOH A 56 656 9 HOH HOH . I 6 HOH A 57 657 37 HOH HOH . I 6 HOH A 58 658 51 HOH HOH . I 6 HOH A 59 659 72 HOH HOH . I 6 HOH A 60 660 12 HOH HOH . I 6 HOH A 61 661 2 HOH HOH . I 6 HOH A 62 662 61 HOH HOH . I 6 HOH A 63 663 38 HOH HOH . I 6 HOH A 64 664 80 HOH HOH . I 6 HOH A 65 665 29 HOH HOH . I 6 HOH A 66 666 71 HOH HOH . I 6 HOH A 67 667 77 HOH HOH . I 6 HOH A 68 668 45 HOH HOH . I 6 HOH A 69 669 48 HOH HOH . I 6 HOH A 70 670 63 HOH HOH . I 6 HOH A 71 671 17 HOH HOH . I 6 HOH A 72 672 57 HOH HOH . I 6 HOH A 73 673 84 HOH HOH . I 6 HOH A 74 674 43 HOH HOH . I 6 HOH A 75 675 31 HOH HOH . I 6 HOH A 76 676 28 HOH HOH . I 6 HOH A 77 677 73 HOH HOH . I 6 HOH A 78 678 56 HOH HOH . I 6 HOH A 79 679 3 HOH HOH . I 6 HOH A 80 680 40 HOH HOH . I 6 HOH A 81 681 67 HOH HOH . I 6 HOH A 82 682 15 HOH HOH . I 6 HOH A 83 683 46 HOH HOH . I 6 HOH A 84 684 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . B 2 -11.83 23.628 -5.932 1 40.99 ? PB ADP 501 A 1 HETATM 2 O O1B ADP . . . B 2 -12.37 23.28 -7.296 1 41.41 ? O1B ADP 501 A 1 HETATM 3 O O2B ADP . . . B 2 -11.301 22.43 -5.189 1 37.13 ? O2B ADP 501 A 1 HETATM 4 O O3B ADP . . . B 2 -12.669 24.553 -5.084 1 39.92 ? O3B ADP 501 A 1 HETATM 5 P PA ADP . . . B 2 -10.377 25.904 -6.963 1 37.08 ? PA ADP 501 A 1 HETATM 6 O O1A ADP . . . B 2 -10.1 25.826 -8.44 1 42.28 ? O1A ADP 501 A 1 HETATM 7 O O2A ADP . . . B 2 -11.421 26.852 -6.429 1 35.55 ? O2A ADP 501 A 1 HETATM 8 O O3A ADP . . . B 2 -10.479 24.465 -6.256 1 34.96 ? O3A ADP 501 A 1 HETATM 9 O O5' ADP . . . B 2 -8.964 26.409 -6.327 1 39.48 ? O5' ADP 501 A 1 HETATM 10 C C5' ADP . . . B 2 -8.73 26.317 -4.922 1 29.44 ? C5' ADP 501 A 1 HETATM 11 C C4' ADP . . . B 2 -8.016 27.578 -4.395 1 35.52 ? C4' ADP 501 A 1 HETATM 12 O O4' ADP . . . B 2 -6.724 27.756 -5.008 1 37.11 ? O4' ADP 501 A 1 HETATM 13 C C3' ADP . . . B 2 -8.745 28.889 -4.677 1 36.16 ? C3' ADP 501 A 1 HETATM 14 O O3' ADP . . . B 2 -9.694 29.192 -3.646 1 38.48 ? O3' ADP 501 A 1 HETATM 15 C C2' ADP . . . B 2 -7.615 29.911 -4.715 1 35.4 ? C2' ADP 501 A 1 HETATM 16 O O2' ADP . . . B 2 -7.252 30.238 -3.368 1 33.08 ? O2' ADP 501 A 1 HETATM 17 C C1' ADP . . . B 2 -6.432 29.133 -5.265 1 33.49 ? C1' ADP 501 A 1 HETATM 18 N N9 ADP . . . B 2 -6.34 29.312 -6.725 1 30.21 ? N9 ADP 501 A 1 HETATM 19 C C8 ADP . . . B 2 -7.033 28.552 -7.592 1 29.26 ? C8 ADP 501 A 1 HETATM 20 N N7 ADP . . . B 2 -6.787 28.913 -8.866 1 31.55 ? N7 ADP 501 A 1 HETATM 21 C C5 ADP . . . B 2 -5.883 29.916 -8.829 1 32.67 ? C5 ADP 501 A 1 HETATM 22 C C6 ADP . . . B 2 -5.189 30.736 -9.85 1 36.75 ? C6 ADP 501 A 1 HETATM 23 N N6 ADP . . . B 2 -5.429 30.536 -11.172 1 33.87 ? N6 ADP 501 A 1 HETATM 24 N N1 ADP . . . B 2 -4.334 31.694 -9.413 1 32.76 ? N1 ADP 501 A 1 HETATM 25 C C2 ADP . . . B 2 -4.112 31.883 -8.095 1 30.04 ? C2 ADP 501 A 1 HETATM 26 N N3 ADP . . . B 2 -4.701 31.171 -7.118 1 29.32 ? N3 ADP 501 A 1 HETATM 27 C C4 ADP . . . B 2 -5.589 30.18 -7.412 1 28.3 ? C4 ADP 501 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #