data_6R4C # _model_server_result.job_id zCvRfW6uVTFfGAPO4z2yFw _model_server_result.datetime_utc '2024-11-29 07:44:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6r4c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":507}' # _entry.id 6R4C # _exptl.entry_id 6R4C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 290.357 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ethyl 2-[(2~{R})-1-[(4-methylphenyl)methyl]-3-oxidanylidene-piperazin-2-yl]ethanoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6R4C _cell.length_a 81.586 _cell.length_b 81.586 _cell.length_c 175.625 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6R4C _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 169 A THR 287 1_555 A N TPO 170 A TPO 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C TPO 170 A TPO 288 1_555 A N LEU 171 A LEU 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A OD1 ASN 143 A ASN 261 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc2 A OD2 ASP 156 A ASP 274 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc3 A OD1 ASP 156 A ASP 274 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc4 B O3B ADP . A ADP 501 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc5 B O2A ADP . A ADP 501 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc6 B O1B ADP . A ADP 501 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc7 C MG MG . A MG 502 1_555 I O HOH . A HOH 654 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc8 C MG MG . A MG 502 1_555 I O HOH . A HOH 676 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc9 D MG MG . A MG 503 1_555 I O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc10 D MG MG . A MG 503 1_555 I O HOH . A HOH 627 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc11 D MG MG . A MG 503 1_555 I O HOH . A HOH 683 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.872 ? # _chem_comp.formula 'C16 H22 N2 O3' _chem_comp.formula_weight 290.357 _chem_comp.id JRQ _chem_comp.mon_nstd_flag . _chem_comp.name 'ethyl 2-[(2~{R})-1-[(4-methylphenyl)methyl]-3-oxidanylidene-piperazin-2-yl]ethanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O19 C15 JRQ doub 217 n n C15 N16 JRQ sing 218 n n C15 C08 JRQ sing 219 n n N16 C17 JRQ sing 220 n n C13 C12 JRQ sing 221 n n C08 C09 JRQ sing 222 n n C08 N07 JRQ sing 223 n n C17 C18 JRQ sing 224 n n C12 O11 JRQ sing 225 n n C09 C10 JRQ sing 226 n n O11 C10 JRQ sing 227 n n C18 N07 JRQ sing 228 n n C10 O14 JRQ doub 229 n n N07 C06 JRQ sing 230 n n C06 C05 JRQ sing 231 n n C05 C04 JRQ doub 232 n y C05 C20 JRQ sing 233 n y C04 C03 JRQ sing 234 n y C20 C21 JRQ doub 235 n y C03 C02 JRQ doub 236 n y C21 C02 JRQ sing 237 n y C02 C01 JRQ sing 238 n n C13 H133 JRQ sing 239 n n C13 H131 JRQ sing 240 n n C13 H132 JRQ sing 241 n n C17 H171 JRQ sing 242 n n C17 H172 JRQ sing 243 n n C20 H201 JRQ sing 244 n n C21 H211 JRQ sing 245 n n C01 H012 JRQ sing 246 n n C01 H011 JRQ sing 247 n n C01 H013 JRQ sing 248 n n C03 H031 JRQ sing 249 n n C04 H041 JRQ sing 250 n n C06 H061 JRQ sing 251 n n C06 H062 JRQ sing 252 n n C08 H081 JRQ sing 253 n n C09 H092 JRQ sing 254 n n C09 H091 JRQ sing 255 n n C12 H121 JRQ sing 256 n n C12 H122 JRQ sing 257 n n N16 H161 JRQ sing 258 n n C18 H182 JRQ sing 259 n n C18 H181 JRQ sing 260 n n # _atom_sites.entry_id 6R4C _atom_sites.fract_transf_matrix[1][1] 0.012257 _atom_sites.fract_transf_matrix[1][2] 0.007077 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014153 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005694 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 501 1392 ADP ADP . C 3 MG A 1 502 1395 MG MG . D 3 MG A 1 503 1396 MG MG . E 4 CL A 1 504 1397 CL CL . F 4 CL A 1 505 1398 CL CL . G 4 CL A 1 506 1399 CL CL . H 5 JRQ A 1 507 2 JRQ LIG . I 6 HOH A 1 601 41 HOH HOH . I 6 HOH A 2 602 5 HOH HOH . I 6 HOH A 3 603 81 HOH HOH . I 6 HOH A 4 604 76 HOH HOH . I 6 HOH A 5 605 82 HOH HOH . I 6 HOH A 6 606 25 HOH HOH . I 6 HOH A 7 607 54 HOH HOH . I 6 HOH A 8 608 11 HOH HOH . I 6 HOH A 9 609 58 HOH HOH . I 6 HOH A 10 610 18 HOH HOH . I 6 HOH A 11 611 74 HOH HOH . I 6 HOH A 12 612 68 HOH HOH . I 6 HOH A 13 613 75 HOH HOH . I 6 HOH A 14 614 62 HOH HOH . I 6 HOH A 15 615 20 HOH HOH . I 6 HOH A 16 616 44 HOH HOH . I 6 HOH A 17 617 49 HOH HOH . I 6 HOH A 18 618 19 HOH HOH . I 6 HOH A 19 619 1 HOH HOH . I 6 HOH A 20 620 23 HOH HOH . I 6 HOH A 21 621 59 HOH HOH . I 6 HOH A 22 622 66 HOH HOH . I 6 HOH A 23 623 7 HOH HOH . I 6 HOH A 24 624 14 HOH HOH . I 6 HOH A 25 625 83 HOH HOH . I 6 HOH A 26 626 79 HOH HOH . I 6 HOH A 27 627 30 HOH HOH . I 6 HOH A 28 628 24 HOH HOH . I 6 HOH A 29 629 36 HOH HOH . I 6 HOH A 30 630 16 HOH HOH . I 6 HOH A 31 631 47 HOH HOH . I 6 HOH A 32 632 50 HOH HOH . I 6 HOH A 33 633 78 HOH HOH . I 6 HOH A 34 634 6 HOH HOH . I 6 HOH A 35 635 34 HOH HOH . I 6 HOH A 36 636 10 HOH HOH . I 6 HOH A 37 637 33 HOH HOH . I 6 HOH A 38 638 26 HOH HOH . I 6 HOH A 39 639 69 HOH HOH . I 6 HOH A 40 640 70 HOH HOH . I 6 HOH A 41 641 21 HOH HOH . I 6 HOH A 42 642 35 HOH HOH . I 6 HOH A 43 643 55 HOH HOH . I 6 HOH A 44 644 53 HOH HOH . I 6 HOH A 45 645 32 HOH HOH . I 6 HOH A 46 646 4 HOH HOH . I 6 HOH A 47 647 39 HOH HOH . I 6 HOH A 48 648 22 HOH HOH . I 6 HOH A 49 649 8 HOH HOH . I 6 HOH A 50 650 52 HOH HOH . I 6 HOH A 51 651 64 HOH HOH . I 6 HOH A 52 652 65 HOH HOH . I 6 HOH A 53 653 13 HOH HOH . I 6 HOH A 54 654 27 HOH HOH . I 6 HOH A 55 655 60 HOH HOH . I 6 HOH A 56 656 9 HOH HOH . I 6 HOH A 57 657 37 HOH HOH . I 6 HOH A 58 658 51 HOH HOH . I 6 HOH A 59 659 72 HOH HOH . I 6 HOH A 60 660 12 HOH HOH . I 6 HOH A 61 661 2 HOH HOH . I 6 HOH A 62 662 61 HOH HOH . I 6 HOH A 63 663 38 HOH HOH . I 6 HOH A 64 664 80 HOH HOH . I 6 HOH A 65 665 29 HOH HOH . I 6 HOH A 66 666 71 HOH HOH . I 6 HOH A 67 667 77 HOH HOH . I 6 HOH A 68 668 45 HOH HOH . I 6 HOH A 69 669 48 HOH HOH . I 6 HOH A 70 670 63 HOH HOH . I 6 HOH A 71 671 17 HOH HOH . I 6 HOH A 72 672 57 HOH HOH . I 6 HOH A 73 673 84 HOH HOH . I 6 HOH A 74 674 43 HOH HOH . I 6 HOH A 75 675 31 HOH HOH . I 6 HOH A 76 676 28 HOH HOH . I 6 HOH A 77 677 73 HOH HOH . I 6 HOH A 78 678 56 HOH HOH . I 6 HOH A 79 679 3 HOH HOH . I 6 HOH A 80 680 40 HOH HOH . I 6 HOH A 81 681 67 HOH HOH . I 6 HOH A 82 682 15 HOH HOH . I 6 HOH A 83 683 46 HOH HOH . I 6 HOH A 84 684 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 JRQ . . . H 5 -9.675 14.712 -18.493 1 75.73 ? C10 JRQ 507 A 1 HETATM 2 C C13 JRQ . . . H 5 -11.784 16.268 -19.974 1 63.45 ? C13 JRQ 507 A 1 HETATM 3 C C15 JRQ . . . H 5 -9.685 12.461 -20.603 1 75.79 ? C15 JRQ 507 A 1 HETATM 4 C C17 JRQ . . . H 5 -11.56 11.299 -19.296 1 68.76 ? C17 JRQ 507 A 1 HETATM 5 C C20 JRQ . . . H 5 -10.119 11.708 -14.662 1 49.5 ? C20 JRQ 507 A 1 HETATM 6 C C21 JRQ . . . H 5 -10.543 11.111 -13.49 1 56.14 ? C21 JRQ 507 A 1 HETATM 7 C C01 JRQ . . . H 5 -10.983 9.218 -12.022 1 54.14 ? C01 JRQ 507 A 1 HETATM 8 C C02 JRQ . . . H 5 -10.486 9.747 -13.341 1 54.83 ? C02 JRQ 507 A 1 HETATM 9 C C03 JRQ . . . H 5 -10.002 8.974 -14.395 1 60.36 ? C03 JRQ 507 A 1 HETATM 10 C C04 JRQ . . . H 5 -9.557 9.59 -15.614 1 63.91 ? C04 JRQ 507 A 1 HETATM 11 C C05 JRQ . . . H 5 -9.641 10.97 -15.737 1 63.58 ? C05 JRQ 507 A 1 HETATM 12 C C06 JRQ . . . H 5 -9.215 11.795 -16.895 1 69.41 ? C06 JRQ 507 A 1 HETATM 13 N N07 JRQ . . . H 5 -9.148 11.207 -18.298 1 68.72 ? N07 JRQ 507 A 1 HETATM 14 C C08 JRQ . . . H 5 -8.739 12.297 -19.349 1 64.92 ? C08 JRQ 507 A 1 HETATM 15 C C09 JRQ . . . H 5 -8.42 13.739 -18.732 1 62.68 ? C09 JRQ 507 A 1 HETATM 16 O O11 JRQ . . . H 5 -10.954 14.236 -18.712 1 71.36 ? O11 JRQ 507 A 1 HETATM 17 C C12 JRQ . . . H 5 -12.08 15.181 -18.923 1 63.46 ? C12 JRQ 507 A 1 HETATM 18 O O14 JRQ . . . H 5 -9.497 15.837 -18.111 1 81.62 ? O14 JRQ 507 A 1 HETATM 19 N N16 JRQ . . . H 5 -11.042 11.975 -20.529 1 73.65 ? N16 JRQ 507 A 1 HETATM 20 C C18 JRQ . . . H 5 -10.441 10.459 -18.68 1 67.23 ? C18 JRQ 507 A 1 HETATM 21 O O19 JRQ . . . H 5 -9.335 12.996 -21.594 1 73.46 ? O19 JRQ 507 A 1 HETATM 22 H H133 JRQ . . . H 5 -12.649 16.959 -20.124 1 76.14 ? H133 JRQ 507 A 1 HETATM 23 H H131 JRQ . . . H 5 -11.534 15.903 -20.978 1 76.14 ? H131 JRQ 507 A 1 HETATM 24 H H132 JRQ . . . H 5 -10.954 16.953 -19.739 1 76.14 ? H132 JRQ 507 A 1 HETATM 25 H H171 JRQ . . . H 5 -12.453 10.66 -19.522 1 82.51 ? H171 JRQ 507 A 1 HETATM 26 H H172 JRQ . . . H 5 -11.981 12.076 -18.604 1 82.51 ? H172 JRQ 507 A 1 HETATM 27 H H201 JRQ . . . H 5 -10.174 12.796 -14.748 1 59.4 ? H201 JRQ 507 A 1 HETATM 28 H H211 JRQ . . . H 5 -10.921 11.766 -12.691 1 67.37 ? H211 JRQ 507 A 1 HETATM 29 H H012 JRQ . . . H 5 -10.416 8.382 -11.592 1 64.97 ? H012 JRQ 507 A 1 HETATM 30 H H011 JRQ . . . H 5 -12.025 8.848 -12.028 1 64.97 ? H011 JRQ 507 A 1 HETATM 31 H H013 JRQ . . . H 5 -11.013 9.954 -11.196 1 64.97 ? H013 JRQ 507 A 1 HETATM 32 H H031 JRQ . . . H 5 -9.882 7.889 -14.469 1 72.43 ? H031 JRQ 507 A 1 HETATM 33 H H041 JRQ . . . H 5 -9.183 8.92 -16.41 1 76.69 ? H041 JRQ 507 A 1 HETATM 34 H H061 JRQ . . . H 5 -9.839 12.728 -17.002 1 83.29 ? H061 JRQ 507 A 1 HETATM 35 H H062 JRQ . . . H 5 -8.198 12.243 -16.754 1 83.29 ? H062 JRQ 507 A 1 HETATM 36 H H081 JRQ . . . H 5 -7.772 11.879 -19.714 1 77.91 ? H081 JRQ 507 A 1 HETATM 37 H H092 JRQ . . . H 5 -7.735 14.28 -19.46 1 75.22 ? H092 JRQ 507 A 1 HETATM 38 H H091 JRQ . . . H 5 -7.763 13.662 -17.848 1 75.22 ? H091 JRQ 507 A 1 HETATM 39 H H121 JRQ . . . H 5 -12.949 14.596 -19.277 1 76.15 ? H121 JRQ 507 A 1 HETATM 40 H H122 JRQ . . . H 5 -12.326 15.675 -17.953 1 76.15 ? H122 JRQ 507 A 1 HETATM 41 H H161 JRQ . . . H 5 -11.711 12.047 -21.287 1 88.39 ? H161 JRQ 507 A 1 HETATM 42 H H182 JRQ . . . H 5 -10.145 9.605 -19.309 1 80.68 ? H182 JRQ 507 A 1 HETATM 43 H H181 JRQ . . . H 5 -10.838 10.009 -17.729 1 80.68 ? H181 JRQ 507 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #