data_6R4D # _model_server_result.job_id 1BTc1HpDwGn0eU6PxvLy5g _model_server_result.datetime_utc '2024-11-25 17:39:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6r4d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":505}' # _entry.id 6R4D # _exptl.entry_id 6R4D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 314.422 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1~{S},10~{S})-12-cyclobutyl-5-methyl-1-oxidanyl-10-propan-2-yl-9,12-diazatricyclo[8.2.1.0^{2,7}]trideca-2(7),3,5-trien-11-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6R4D _cell.length_a 82.76 _cell.length_b 82.76 _cell.length_c 173.688 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6R4D _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 169 A THR 287 1_555 A N TPO 170 A TPO 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C TPO 170 A TPO 288 1_555 A N LEU 171 A LEU 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? metalc ? metalc1 A OD1 ASN 143 A ASN 261 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc2 A OD2 ASP 156 A ASP 274 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc3 A OD1 ASP 156 A ASP 274 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.876 ? metalc ? metalc4 B O3B ADP . A ADP 501 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc5 B O2A ADP . A ADP 501 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc6 B O1B ADP . A ADP 501 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc7 C MG MG . A MG 502 1_555 G O HOH . A HOH 655 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc8 C MG MG . A MG 502 1_555 G O HOH . A HOH 686 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc9 D MG MG . A MG 503 1_555 G O HOH . A HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc10 D MG MG . A MG 503 1_555 G O HOH . A HOH 691 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.74 ? # _chem_comp.formula 'C19 H26 N2 O2' _chem_comp.formula_weight 314.422 _chem_comp.id JRW _chem_comp.mon_nstd_flag . _chem_comp.name (1~{S},10~{S})-12-cyclobutyl-5-methyl-1-oxidanyl-10-propan-2-yl-9,12-diazatricyclo[8.2.1.0^{2,7}]trideca-2(7),3,5-trien-11-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C22 C21 JRW sing 217 n n C21 C23 JRW sing 218 n n C21 C09 JRW sing 219 n n N12 C09 JRW sing 220 n n N12 C13 JRW sing 221 n n C08 C09 JRW sing 222 n n C08 C02 JRW sing 223 n n C09 C10 JRW sing 224 n n C19 C18 JRW sing 225 n n C18 C20 JRW doub 226 n y C18 C17 JRW sing 227 n y C20 C14 JRW sing 228 n y C17 C16 JRW doub 229 n y C14 C13 JRW sing 230 n n C14 C15 JRW doub 231 n y C16 C15 JRW sing 232 n y C15 C02 JRW sing 233 n n C02 O01 JRW sing 234 n n C02 N03 JRW sing 235 n n C10 N03 JRW sing 236 n n C10 O11 JRW doub 237 n n N03 C04 JRW sing 238 n n C04 C05 JRW sing 239 n n C04 C07 JRW sing 240 n n C05 C06 JRW sing 241 n n C07 C06 JRW sing 242 n n N12 H1 JRW sing 243 n n C13 H3 JRW sing 244 n n C13 H4 JRW sing 245 n n C17 H5 JRW sing 246 n n C20 H6 JRW sing 247 n n C21 H7 JRW sing 248 n n C22 H8 JRW sing 249 n n C22 H9 JRW sing 250 n n C22 H10 JRW sing 251 n n O01 H11 JRW sing 252 n n C04 H12 JRW sing 253 n n C05 H13 JRW sing 254 n n C05 H14 JRW sing 255 n n C06 H15 JRW sing 256 n n C06 H16 JRW sing 257 n n C07 H17 JRW sing 258 n n C07 H18 JRW sing 259 n n C08 H19 JRW sing 260 n n C08 H20 JRW sing 261 n n C16 H21 JRW sing 262 n n C19 H22 JRW sing 263 n n C19 H23 JRW sing 264 n n C19 H24 JRW sing 265 n n C23 H25 JRW sing 266 n n C23 H26 JRW sing 267 n n C23 H27 JRW sing 268 n n # _atom_sites.entry_id 6R4D _atom_sites.fract_transf_matrix[1][1] 0.012083 _atom_sites.fract_transf_matrix[1][2] 0.006976 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013952 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005757 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 501 1392 ADP ADP . C 3 MG A 1 502 1395 MG MG . D 3 MG A 1 503 1396 MG MG . E 4 CL A 1 504 1 CL CL . F 5 JRW A 1 505 1 JRW LIG . G 6 HOH A 1 601 40 HOH HOH . G 6 HOH A 2 602 84 HOH HOH . G 6 HOH A 3 603 31 HOH HOH . G 6 HOH A 4 604 53 HOH HOH . G 6 HOH A 5 605 30 HOH HOH . G 6 HOH A 6 606 57 HOH HOH . G 6 HOH A 7 607 18 HOH HOH . G 6 HOH A 8 608 19 HOH HOH . G 6 HOH A 9 609 47 HOH HOH . G 6 HOH A 10 610 63 HOH HOH . G 6 HOH A 11 611 104 HOH HOH . G 6 HOH A 12 612 85 HOH HOH . G 6 HOH A 13 613 64 HOH HOH . G 6 HOH A 14 614 34 HOH HOH . G 6 HOH A 15 615 82 HOH HOH . G 6 HOH A 16 616 25 HOH HOH . G 6 HOH A 17 617 14 HOH HOH . G 6 HOH A 18 618 54 HOH HOH . G 6 HOH A 19 619 66 HOH HOH . G 6 HOH A 20 620 1 HOH HOH . G 6 HOH A 21 621 20 HOH HOH . G 6 HOH A 22 622 56 HOH HOH . G 6 HOH A 23 623 10 HOH HOH . G 6 HOH A 24 624 48 HOH HOH . G 6 HOH A 25 625 15 HOH HOH . G 6 HOH A 26 626 42 HOH HOH . G 6 HOH A 27 627 11 HOH HOH . G 6 HOH A 28 628 6 HOH HOH . G 6 HOH A 29 629 24 HOH HOH . G 6 HOH A 30 630 23 HOH HOH . G 6 HOH A 31 631 9 HOH HOH . G 6 HOH A 32 632 86 HOH HOH . G 6 HOH A 33 633 65 HOH HOH . G 6 HOH A 34 634 97 HOH HOH . G 6 HOH A 35 635 51 HOH HOH . G 6 HOH A 36 636 2 HOH HOH . G 6 HOH A 37 637 90 HOH HOH . G 6 HOH A 38 638 98 HOH HOH . G 6 HOH A 39 639 45 HOH HOH . G 6 HOH A 40 640 96 HOH HOH . G 6 HOH A 41 641 75 HOH HOH . G 6 HOH A 42 642 38 HOH HOH . G 6 HOH A 43 643 5 HOH HOH . G 6 HOH A 44 644 32 HOH HOH . G 6 HOH A 45 645 72 HOH HOH . G 6 HOH A 46 646 78 HOH HOH . G 6 HOH A 47 647 79 HOH HOH . G 6 HOH A 48 648 39 HOH HOH . G 6 HOH A 49 649 36 HOH HOH . G 6 HOH A 50 650 77 HOH HOH . G 6 HOH A 51 651 33 HOH HOH . G 6 HOH A 52 652 60 HOH HOH . G 6 HOH A 53 653 74 HOH HOH . G 6 HOH A 54 654 35 HOH HOH . G 6 HOH A 55 655 27 HOH HOH . G 6 HOH A 56 656 29 HOH HOH . G 6 HOH A 57 657 59 HOH HOH . G 6 HOH A 58 658 37 HOH HOH . G 6 HOH A 59 659 8 HOH HOH . G 6 HOH A 60 660 71 HOH HOH . G 6 HOH A 61 661 87 HOH HOH . G 6 HOH A 62 662 13 HOH HOH . G 6 HOH A 63 663 21 HOH HOH . G 6 HOH A 64 664 41 HOH HOH . G 6 HOH A 65 665 17 HOH HOH . G 6 HOH A 66 666 67 HOH HOH . G 6 HOH A 67 667 69 HOH HOH . G 6 HOH A 68 668 103 HOH HOH . G 6 HOH A 69 669 49 HOH HOH . G 6 HOH A 70 670 70 HOH HOH . G 6 HOH A 71 671 62 HOH HOH . G 6 HOH A 72 672 26 HOH HOH . G 6 HOH A 73 673 89 HOH HOH . G 6 HOH A 74 674 16 HOH HOH . G 6 HOH A 75 675 73 HOH HOH . G 6 HOH A 76 676 4 HOH HOH . G 6 HOH A 77 677 22 HOH HOH . G 6 HOH A 78 678 7 HOH HOH . G 6 HOH A 79 679 58 HOH HOH . G 6 HOH A 80 680 55 HOH HOH . G 6 HOH A 81 681 101 HOH HOH . G 6 HOH A 82 682 61 HOH HOH . G 6 HOH A 83 683 100 HOH HOH . G 6 HOH A 84 684 76 HOH HOH . G 6 HOH A 85 685 12 HOH HOH . G 6 HOH A 86 686 28 HOH HOH . G 6 HOH A 87 687 50 HOH HOH . G 6 HOH A 88 688 68 HOH HOH . G 6 HOH A 89 689 46 HOH HOH . G 6 HOH A 90 690 3 HOH HOH . G 6 HOH A 91 691 44 HOH HOH . G 6 HOH A 92 692 52 HOH HOH . G 6 HOH A 93 693 43 HOH HOH . G 6 HOH A 94 694 93 HOH HOH . G 6 HOH A 95 695 94 HOH HOH . G 6 HOH A 96 696 95 HOH HOH . G 6 HOH A 97 697 80 HOH HOH . G 6 HOH A 98 698 81 HOH HOH . G 6 HOH A 99 699 83 HOH HOH . G 6 HOH A 100 700 91 HOH HOH . G 6 HOH A 101 701 99 HOH HOH . G 6 HOH A 102 702 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 JRW . . . F 5 -9.5 10.445 -15.893 1 46.07 ? C10 JRW 505 A 1 HETATM 2 N N12 JRW . . . F 5 -8.651 11.612 -17.943 1 46.07 ? N12 JRW 505 A 1 HETATM 3 C C13 JRW . . . F 5 -8.531 12.803 -16.805 1 33.03 ? C13 JRW 505 A 1 HETATM 4 C C15 JRW . . . F 5 -11.218 13.018 -16.669 1 39.8 ? C15 JRW 505 A 1 HETATM 5 C C17 JRW . . . F 5 -12.32 15.41 -16.875 1 35.09 ? C17 JRW 505 A 1 HETATM 6 C C20 JRW . . . F 5 -9.71 15.167 -17.019 1 36.11 ? C20 JRW 505 A 1 HETATM 7 C C21 JRW . . . F 5 -9.07 9.278 -18.13 1 44.63 ? C21 JRW 505 A 1 HETATM 8 C C22 JRW . . . F 5 -9.116 9.499 -19.634 1 43.44 ? C22 JRW 505 A 1 HETATM 9 O O01 JRW . . . F 5 -12.749 11.35 -16.275 1 45.7 ? O01 JRW 505 A 1 HETATM 10 C C02 JRW . . . F 5 -11.385 11.606 -16.521 1 43.9 ? C02 JRW 505 A 1 HETATM 11 N N03 JRW . . . F 5 -10.598 11.051 -15.481 1 43.23 ? N03 JRW 505 A 1 HETATM 12 C C04 JRW . . . F 5 -11.082 11.165 -14.211 1 51.69 ? C04 JRW 505 A 1 HETATM 13 C C05 JRW . . . F 5 -11.101 9.948 -13.344 1 52.16 ? C05 JRW 505 A 1 HETATM 14 C C06 JRW . . . F 5 -10.841 10.912 -12.217 1 54.5 ? C06 JRW 505 A 1 HETATM 15 C C07 JRW . . . F 5 -10.189 11.814 -13.216 1 50.57 ? C07 JRW 505 A 1 HETATM 16 C C08 JRW . . . F 5 -10.908 10.906 -17.726 1 42.26 ? C08 JRW 505 A 1 HETATM 17 C C09 JRW . . . F 5 -9.527 10.56 -17.456 1 39.24 ? C09 JRW 505 A 1 HETATM 18 O O11 JRW . . . F 5 -8.637 9.882 -15.249 1 47.48 ? O11 JRW 505 A 1 HETATM 19 C C14 JRW . . . F 5 -9.838 13.673 -16.838 1 38.64 ? C14 JRW 505 A 1 HETATM 20 C C16 JRW . . . F 5 -12.428 13.906 -16.695 1 37.47 ? C16 JRW 505 A 1 HETATM 21 C C18 JRW . . . F 5 -10.944 16.046 -17.045 1 34.82 ? C18 JRW 505 A 1 HETATM 22 C C19 JRW . . . F 5 -10.837 17.538 -17.227 1 34.99 ? C19 JRW 505 A 1 HETATM 23 C C23 JRW . . . F 5 -9.924 8.096 -17.7 1 44.27 ? C23 JRW 505 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #