data_6R4J # _model_server_result.job_id UdQNBJZDT1RnwHvHiPM9fQ _model_server_result.datetime_utc '2024-11-07 19:06:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6r4j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":703}' # _entry.id 6R4J # _exptl.entry_id 6R4J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 260.136 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description GLUCOSE-6-PHOSPHATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6R4J _cell.length_a 153.227 _cell.length_b 153.227 _cell.length_c 162.544 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6R4J _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 461 A SER 455 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc2 A O ARG 462 A ARG 456 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.827 ? metalc ? metalc3 A O THR 464 A THR 458 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc4 C O2 UD1 . A UD1 701 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc5 B O SER 461 B SER 455 1_555 H MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc6 B O ARG 462 B ARG 456 1_555 H MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? metalc ? metalc7 B O THR 464 B THR 458 1_555 H MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc8 G O2 UD1 . B UD1 701 1_555 H MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? # _chem_comp.formula 'C6 H13 O9 P' _chem_comp.formula_weight 260.136 _chem_comp.id G6Q _chem_comp.mon_nstd_flag . _chem_comp.name GLUCOSE-6-PHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 G6Q sing 83 n n C1 O1 G6Q doub 84 n n C1 H1 G6Q sing 85 n n C2 C3 G6Q sing 86 n n C2 O2 G6Q sing 87 n n C2 H2 G6Q sing 88 n n C3 C4 G6Q sing 89 n n C3 O3 G6Q sing 90 n n C3 H3 G6Q sing 91 n n C4 C5 G6Q sing 92 n n C4 O4 G6Q sing 93 n n C4 H4 G6Q sing 94 n n C5 C6 G6Q sing 95 n n C5 O5 G6Q sing 96 n n C5 H5 G6Q sing 97 n n C6 O6 G6Q sing 98 n n C6 H61 G6Q sing 99 n n C6 H62 G6Q sing 100 n n O2 HO2 G6Q sing 101 n n O3 HO3 G6Q sing 102 n n O4 HO4 G6Q sing 103 n n O5 HO5 G6Q sing 104 n n O6 P G6Q sing 105 n n P O1P G6Q doub 106 n n P O2P G6Q sing 107 n n P O3P G6Q sing 108 n n O2P HOP2 G6Q sing 109 n n O3P HOP3 G6Q sing 110 n n # _atom_sites.entry_id 6R4J _atom_sites.fract_transf_matrix[1][1] 0.006526 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006526 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006152 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 UD1 A 1 701 1 UD1 UD1 . D 3 MG A 1 702 2 MG MG . E 4 G6Q A 1 703 1 G6Q G6Q . F 5 GLU A 1 704 1 GLU GLU . G 2 UD1 B 1 701 3 UD1 UD1 . H 3 MG B 1 702 4 MG MG . I 4 G6Q B 1 703 2 G6Q G6Q . J 6 HOH A 1 801 146 HOH HOH . J 6 HOH A 2 802 69 HOH HOH . J 6 HOH A 3 803 84 HOH HOH . J 6 HOH A 4 804 151 HOH HOH . J 6 HOH A 5 805 19 HOH HOH . J 6 HOH A 6 806 145 HOH HOH . J 6 HOH A 7 807 88 HOH HOH . J 6 HOH A 8 808 39 HOH HOH . J 6 HOH A 9 809 10 HOH HOH . J 6 HOH A 10 810 142 HOH HOH . J 6 HOH A 11 811 5 HOH HOH . J 6 HOH A 12 812 33 HOH HOH . J 6 HOH A 13 813 8 HOH HOH . J 6 HOH A 14 814 26 HOH HOH . J 6 HOH A 15 815 128 HOH HOH . J 6 HOH A 16 816 7 HOH HOH . J 6 HOH A 17 817 43 HOH HOH . J 6 HOH A 18 818 92 HOH HOH . J 6 HOH A 19 819 91 HOH HOH . J 6 HOH A 20 820 143 HOH HOH . J 6 HOH A 21 821 44 HOH HOH . J 6 HOH A 22 822 148 HOH HOH . J 6 HOH A 23 823 90 HOH HOH . J 6 HOH A 24 824 28 HOH HOH . J 6 HOH A 25 825 58 HOH HOH . J 6 HOH A 26 826 1 HOH HOH . J 6 HOH A 27 827 24 HOH HOH . J 6 HOH A 28 828 144 HOH HOH . J 6 HOH A 29 829 3 HOH HOH . J 6 HOH A 30 830 126 HOH HOH . J 6 HOH A 31 831 83 HOH HOH . J 6 HOH A 32 832 25 HOH HOH . J 6 HOH A 33 833 40 HOH HOH . J 6 HOH A 34 834 32 HOH HOH . J 6 HOH A 35 835 81 HOH HOH . J 6 HOH A 36 836 62 HOH HOH . J 6 HOH A 37 837 51 HOH HOH . J 6 HOH A 38 838 9 HOH HOH . J 6 HOH A 39 839 31 HOH HOH . J 6 HOH A 40 840 22 HOH HOH . J 6 HOH A 41 841 133 HOH HOH . J 6 HOH A 42 842 15 HOH HOH . J 6 HOH A 43 843 102 HOH HOH . J 6 HOH A 44 844 17 HOH HOH . J 6 HOH A 45 845 20 HOH HOH . J 6 HOH A 46 846 27 HOH HOH . J 6 HOH A 47 847 11 HOH HOH . J 6 HOH A 48 848 124 HOH HOH . J 6 HOH A 49 849 68 HOH HOH . J 6 HOH A 50 850 149 HOH HOH . J 6 HOH A 51 851 75 HOH HOH . J 6 HOH A 52 852 52 HOH HOH . J 6 HOH A 53 853 18 HOH HOH . J 6 HOH A 54 854 89 HOH HOH . J 6 HOH A 55 855 48 HOH HOH . J 6 HOH A 56 856 116 HOH HOH . J 6 HOH A 57 857 42 HOH HOH . J 6 HOH A 58 858 130 HOH HOH . J 6 HOH A 59 859 64 HOH HOH . J 6 HOH A 60 860 30 HOH HOH . J 6 HOH A 61 861 60 HOH HOH . J 6 HOH A 62 862 49 HOH HOH . J 6 HOH A 63 863 79 HOH HOH . J 6 HOH A 64 864 94 HOH HOH . J 6 HOH A 65 865 118 HOH HOH . J 6 HOH A 66 866 140 HOH HOH . J 6 HOH A 67 867 115 HOH HOH . J 6 HOH A 68 868 105 HOH HOH . J 6 HOH A 69 869 99 HOH HOH . J 6 HOH A 70 870 141 HOH HOH . J 6 HOH A 71 871 87 HOH HOH . J 6 HOH A 72 872 57 HOH HOH . J 6 HOH A 73 873 120 HOH HOH . J 6 HOH A 74 874 117 HOH HOH . J 6 HOH A 75 875 78 HOH HOH . J 6 HOH A 76 876 54 HOH HOH . J 6 HOH A 77 877 59 HOH HOH . J 6 HOH A 78 878 139 HOH HOH . J 6 HOH A 79 879 125 HOH HOH . K 6 HOH B 1 801 137 HOH HOH . K 6 HOH B 2 802 71 HOH HOH . K 6 HOH B 3 803 150 HOH HOH . K 6 HOH B 4 804 82 HOH HOH . K 6 HOH B 5 805 36 HOH HOH . K 6 HOH B 6 806 80 HOH HOH . K 6 HOH B 7 807 134 HOH HOH . K 6 HOH B 8 808 98 HOH HOH . K 6 HOH B 9 809 35 HOH HOH . K 6 HOH B 10 810 12 HOH HOH . K 6 HOH B 11 811 63 HOH HOH . K 6 HOH B 12 812 70 HOH HOH . K 6 HOH B 13 813 147 HOH HOH . K 6 HOH B 14 814 96 HOH HOH . K 6 HOH B 15 815 127 HOH HOH . K 6 HOH B 16 816 86 HOH HOH . K 6 HOH B 17 817 111 HOH HOH . K 6 HOH B 18 818 108 HOH HOH . K 6 HOH B 19 819 2 HOH HOH . K 6 HOH B 20 820 13 HOH HOH . K 6 HOH B 21 821 56 HOH HOH . K 6 HOH B 22 822 106 HOH HOH . K 6 HOH B 23 823 132 HOH HOH . K 6 HOH B 24 824 23 HOH HOH . K 6 HOH B 25 825 34 HOH HOH . K 6 HOH B 26 826 21 HOH HOH . K 6 HOH B 27 827 53 HOH HOH . K 6 HOH B 28 828 113 HOH HOH . K 6 HOH B 29 829 29 HOH HOH . K 6 HOH B 30 830 131 HOH HOH . K 6 HOH B 31 831 47 HOH HOH . K 6 HOH B 32 832 14 HOH HOH . K 6 HOH B 33 833 38 HOH HOH . K 6 HOH B 34 834 101 HOH HOH . K 6 HOH B 35 835 50 HOH HOH . K 6 HOH B 36 836 152 HOH HOH . K 6 HOH B 37 837 65 HOH HOH . K 6 HOH B 38 838 55 HOH HOH . K 6 HOH B 39 839 16 HOH HOH . K 6 HOH B 40 840 6 HOH HOH . K 6 HOH B 41 841 103 HOH HOH . K 6 HOH B 42 842 4 HOH HOH . K 6 HOH B 43 843 97 HOH HOH . K 6 HOH B 44 844 66 HOH HOH . K 6 HOH B 45 845 114 HOH HOH . K 6 HOH B 46 846 129 HOH HOH . K 6 HOH B 47 847 119 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 G6Q . . . I 4 37.023 -1.235 23.073 1 41.26 ? C1 G6Q 703 B 1 HETATM 2 C C2 G6Q . . . I 4 36.261 -0.21 23.922 1 41.31 ? C2 G6Q 703 B 1 HETATM 3 C C3 G6Q . . . I 4 36.557 1.224 23.415 1 41.14 ? C3 G6Q 703 B 1 HETATM 4 C C4 G6Q . . . I 4 35.439 2.214 23.748 1 43.55 ? C4 G6Q 703 B 1 HETATM 5 C C5 G6Q . . . I 4 35.89 3.673 23.669 1 44.96 ? C5 G6Q 703 B 1 HETATM 6 C C6 G6Q . . . I 4 34.873 4.649 24.223 1 44.83 ? C6 G6Q 703 B 1 HETATM 7 O O1 G6Q . . . I 4 36.734 -2.394 23.175 1 40.38 ? O1 G6Q 703 B 1 HETATM 8 O O2 G6Q . . . I 4 34.872 -0.545 23.917 1 51.38 ? O2 G6Q 703 B 1 HETATM 9 O O3 G6Q . . . I 4 36.787 1.241 22.011 1 47.78 ? O3 G6Q 703 B 1 HETATM 10 O O4 G6Q . . . I 4 34.366 2.01 22.835 1 42.01 ? O4 G6Q 703 B 1 HETATM 11 O O5 G6Q . . . I 4 37.116 3.827 24.384 1 52.94 ? O5 G6Q 703 B 1 HETATM 12 O O6 G6Q . . . I 4 33.542 4.152 23.978 1 53.16 ? O6 G6Q 703 B 1 HETATM 13 P P G6Q . . . I 4 32.228 4.897 24.567 1 42.48 ? P G6Q 703 B 1 HETATM 14 O O1P G6Q . . . I 4 32.233 4.923 26.057 1 50 ? O1P G6Q 703 B 1 HETATM 15 O O2P G6Q . . . I 4 32.201 6.306 23.954 1 44.3 ? O2P G6Q 703 B 1 HETATM 16 O O3P G6Q . . . I 4 31.053 4.096 23.984 1 44.58 ? O3P G6Q 703 B 1 HETATM 17 H H1 G6Q . . . I 4 37.799 -0.856 22.41 1 49.53 ? H1 G6Q 703 B 1 HETATM 18 H H2 G6Q . . . I 4 36.522 -0.309 24.975 1 49.59 ? H2 G6Q 703 B 1 HETATM 19 H H3 G6Q . . . I 4 37.505 1.567 23.825 1 49.39 ? H3 G6Q 703 B 1 HETATM 20 H H4 G6Q . . . I 4 35 1.974 24.715 1 52.28 ? H4 G6Q 703 B 1 HETATM 21 H H5 G6Q . . . I 4 36.192 3.941 22.658 1 53.97 ? H5 G6Q 703 B 1 HETATM 22 H H61 G6Q . . . I 4 34.963 4.778 25.301 1 53.81 ? H61 G6Q 703 B 1 HETATM 23 H H62 G6Q . . . I 4 34.975 5.64 23.783 1 53.81 ? H62 G6Q 703 B 1 HETATM 24 H HO2 G6Q . . . I 4 34.473 -0.203 23.075 1 61.68 ? HO2 G6Q 703 B 1 HETATM 25 H HO3 G6Q . . . I 4 37.742 1.464 21.851 1 57.35 ? HO3 G6Q 703 B 1 HETATM 26 H HO4 G6Q . . . I 4 34.666 2.281 21.928 1 50.42 ? HO4 G6Q 703 B 1 HETATM 27 H HO5 G6Q . . . I 4 36.936 3.674 25.348 1 63.55 ? HO5 G6Q 703 B 1 HETATM 28 H HOP2 G6Q . . . I 4 32.772 6.553 23.18 1 53.17 ? HOP2 G6Q 703 B 1 HETATM 29 H HOP3 G6Q . . . I 4 31.11 3.162 23.65 1 53.51 ? HOP3 G6Q 703 B 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 45 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 29 #