data_6R4L # _model_server_result.job_id Ou7ZYlAFuGhJgNaK53j2dA _model_server_result.datetime_utc '2025-09-01 01:49:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6r4l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1201}' # _entry.id 6R4L # _exptl.entry_id 6R4L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 396.648 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ERGOSTEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.31 _cell.angle_gamma 90 _cell.entry_id 6R4L _cell.length_a 148.67 _cell.length_b 90.06 _cell.length_c 161.68 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6R4L _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 1202 NAG 2 n B NAG 2 B 2 NAG A 1203 NAG 2 n B BMA 3 B 3 BMA A 1204 BMA 2 n C NAG 1 C 1 NAG A 1205 NAG 2 n C NAG 2 C 2 NAG A 1206 NAG 2 n C BMA 3 C 3 BMA A 1207 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 A CYS 23 1_555 A SG CYS 75 A CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 29 A CYS 29 1_555 A SG CYS 41 A CYS 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 110 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 114 A CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 A SG CYS 98 A CYS 98 1_555 A SG CYS 230 A CYS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf6 A SG CYS 101 A CYS 101 1_555 A SG CYS 156 A CYS 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf7 A SG CYS 223 A CYS 223 1_555 A SG CYS 235 A CYS 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 A SG CYS 232 A CYS 232 1_555 A SG CYS 239 A CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf9 A SG CYS 438 A CYS 438 1_555 A SG CYS 447 A CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf10 A SG CYS 473 A CYS 473 1_555 A SG CYS 480 A CYS 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf11 A SG CYS 822 A CYS 822 1_555 A SG CYS 828 A CYS 828 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf12 A SG CYS 868 A CYS 868 1_555 A SG CYS 925 A CYS 925 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf13 A SG CYS 869 A CYS 869 1_555 A SG CYS 891 A CYS 891 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf14 A SG CYS 879 A CYS 879 1_555 A SG CYS 888 A CYS 888 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 123 A ASN 123 1_555 E C1 NAG . A NAG 1208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale2 A ND2 ASN 401 A ASN 401 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.481 ? covale ? covale3 A ND2 ASN 513 A ASN 513 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale4 A ND2 ASN 940 A ASN 940 1_555 F C1 NAG . A NAG 1209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale5 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale6 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale7 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale8 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? # _chem_comp.formula 'C28 H44 O' _chem_comp.formula_weight 396.648 _chem_comp.id ERG _chem_comp.mon_nstd_flag . _chem_comp.name ERGOSTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 ERG sing 107 n n C1 C10 ERG sing 108 n n C1 H11 ERG sing 109 n n C1 H12 ERG sing 110 n n C2 C3 ERG sing 111 n n C2 H21 ERG sing 112 n n C2 H22A ERG sing 113 n n C3 C4 ERG sing 114 n n C3 O1 ERG sing 115 n n C3 H3 ERG sing 116 n n C4 C5 ERG sing 117 n n C4 H41 ERG sing 118 n n C4 H42 ERG sing 119 n n C5 C6 ERG doub 120 n n C5 C10 ERG sing 121 n n C6 C7 ERG sing 122 n n C6 H6 ERG sing 123 n n C7 C8 ERG doub 124 n n C7 H7 ERG sing 125 n n C8 C9 ERG sing 126 n n C8 C14 ERG sing 127 n n C9 C10 ERG sing 128 n n C9 C11 ERG sing 129 n n C9 H9 ERG sing 130 n n C10 C19 ERG sing 131 n n C11 C12 ERG sing 132 n n C11 H111 ERG sing 133 n n C11 H112 ERG sing 134 n n C12 C13 ERG sing 135 n n C12 H121 ERG sing 136 n n C12 H122 ERG sing 137 n n C13 C14 ERG sing 138 n n C13 C17 ERG sing 139 n n C13 C18 ERG sing 140 n n C14 C15 ERG sing 141 n n C14 H14 ERG sing 142 n n C15 C16 ERG sing 143 n n C15 H151 ERG sing 144 n n C15 H152 ERG sing 145 n n C16 C17 ERG sing 146 n n C16 H161 ERG sing 147 n n C16 H162 ERG sing 148 n n C17 C20 ERG sing 149 n n C17 H17 ERG sing 150 n n C18 H181 ERG sing 151 n n C18 H182 ERG sing 152 n n C18 H183 ERG sing 153 n n C19 H191 ERG sing 154 n n C19 H192 ERG sing 155 n n C19 H193 ERG sing 156 n n C20 C21 ERG sing 157 n n C20 C22 ERG sing 158 n n C20 H20 ERG sing 159 n n C21 H211 ERG sing 160 n n C21 H212 ERG sing 161 n n C21 H213 ERG sing 162 n n C22 C23 ERG doub 163 e n C22 H22 ERG sing 164 n n C23 C24 ERG sing 165 n n C23 H23 ERG sing 166 n n C24 C25 ERG sing 167 n n C24 C28 ERG sing 168 n n C24 H24 ERG sing 169 n n C25 C26 ERG sing 170 n n C25 C27 ERG sing 171 n n C25 H25 ERG sing 172 n n C26 H261 ERG sing 173 n n C26 H262 ERG sing 174 n n C26 H263 ERG sing 175 n n C27 H271 ERG sing 176 n n C27 H272 ERG sing 177 n n C27 H273 ERG sing 178 n n C28 H281 ERG sing 179 n n C28 H282 ERG sing 180 n n C28 H283 ERG sing 181 n n O1 HO1 ERG sing 182 n n # _atom_sites.entry_id 6R4L _atom_sites.fract_transf_matrix[1][1] 0.006726 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00249 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011104 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006595 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 ERG A 1 1201 1201 ERG ERG . E 4 NAG A 1 1208 1208 NAG NAG . F 4 NAG A 1 1209 1209 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ERG . . . D 3 -23.744 28.859 47.593 0.87 147.02 ? C1 ERG 1201 A 1 HETATM 2 C C2 ERG . . . D 3 -23.395 28.274 48.964 0.87 170.06 ? C2 ERG 1201 A 1 HETATM 3 C C3 ERG . . . D 3 -22.445 29.185 49.721 0.87 153.84 ? C3 ERG 1201 A 1 HETATM 4 C C4 ERG . . . D 3 -23.062 30.561 49.888 0.87 154.99 ? C4 ERG 1201 A 1 HETATM 5 C C5 ERG . . . D 3 -23.505 31.123 48.56 0.87 172.59 ? C5 ERG 1201 A 1 HETATM 6 C C6 ERG . . . D 3 -23.109 32.336 48.149 0.87 171.81 ? C6 ERG 1201 A 1 HETATM 7 C C7 ERG . . . D 3 -23.457 32.869 46.875 0.87 162.49 ? C7 ERG 1201 A 1 HETATM 8 C C8 ERG . . . D 3 -24.156 32.16 45.983 0.87 164.27 ? C8 ERG 1201 A 1 HETATM 9 C C9 ERG . . . D 3 -24.699 30.79 46.308 0.87 156.45 ? C9 ERG 1201 A 1 HETATM 10 C C10 ERG . . . D 3 -24.421 30.231 47.731 0.87 157.67 ? C10 ERG 1201 A 1 HETATM 11 C C11 ERG . . . D 3 -26.174 30.735 45.889 0.87 157.44 ? C11 ERG 1201 A 1 HETATM 12 C C12 ERG . . . D 3 -26.346 31.075 44.406 0.87 151.13 ? C12 ERG 1201 A 1 HETATM 13 C C13 ERG . . . D 3 -25.829 32.484 44.045 0.87 169.76 ? C13 ERG 1201 A 1 HETATM 14 C C14 ERG . . . D 3 -24.36 32.555 44.542 0.87 167.83 ? C14 ERG 1201 A 1 HETATM 15 C C15 ERG . . . D 3 -23.842 33.885 43.97 0.87 142.73 ? C15 ERG 1201 A 1 HETATM 16 C C16 ERG . . . D 3 -24.607 34.025 42.631 0.87 142.73 ? C16 ERG 1201 A 1 HETATM 17 C C17 ERG . . . D 3 -25.551 32.808 42.556 0.87 175.02 ? C17 ERG 1201 A 1 HETATM 18 C C18 ERG . . . D 3 -26.675 33.567 44.738 0.87 156.89 ? C18 ERG 1201 A 1 HETATM 19 C C19 ERG . . . D 3 -25.741 30.05 48.505 0.87 157.16 ? C19 ERG 1201 A 1 HETATM 20 C C20 ERG . . . D 3 -26.703 33.046 41.556 0.87 174.52 ? C20 ERG 1201 A 1 HETATM 21 C C21 ERG . . . D 3 -27.849 32.042 41.67 0.87 159.06 ? C21 ERG 1201 A 1 HETATM 22 C C22 ERG . . . D 3 -26.139 32.913 40.163 0.87 164.69 ? C22 ERG 1201 A 1 HETATM 23 C C23 ERG . . . D 3 -25.671 31.795 39.642 0.87 143.77 ? C23 ERG 1201 A 1 HETATM 24 C C24 ERG . . . D 3 -24.932 31.645 38.338 0.87 146.19 ? C24 ERG 1201 A 1 HETATM 25 C C25 ERG . . . D 3 -24.173 30.305 38.253 0.87 142.73 ? C25 ERG 1201 A 1 HETATM 26 C C26 ERG . . . D 3 -25.105 29.11 38.359 0.87 142.73 ? C26 ERG 1201 A 1 HETATM 27 C C27 ERG . . . D 3 -23.316 30.19 36.998 0.87 142.73 ? C27 ERG 1201 A 1 HETATM 28 C C28 ERG . . . D 3 -25.876 31.851 37.152 0.87 158.77 ? C28 ERG 1201 A 1 HETATM 29 O O1 ERG . . . D 3 -22.122 28.628 50.996 0.87 142.73 ? O1 ERG 1201 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 409 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 29 #