data_6R4N # _model_server_result.job_id 54NaZhTAbFB79_cJxo8yZg _model_server_result.datetime_utc '2024-10-15 11:23:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6r4n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":305}' # _entry.id 6R4N # _exptl.entry_id 6R4N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 396.648 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ERGOSTEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6R4N _cell.length_a 215.39 _cell.length_b 215.39 _cell.length_c 129.81 _cell.Z_PDB 54 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6R4N _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 ? monomeric 1 author_defined_assembly 5 ? monomeric 1 author_defined_assembly 6 ? monomeric 1 author_defined_assembly 7 ? monomeric 1 author_defined_assembly 8 ? monomeric 1 author_defined_assembly 9 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,K,L,M,N,O 1 1 B,P 2 1 C,Q,R,S,T,U 3 1 D,V 4 1 E,W,X,Y 5 1 F,Z,AA,BA,CA,DA 6 1 G,EA,FA 7 1 H,GA,HA,IA,JA 8 1 I,J,KA,LA,MA 9 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 L N N ? 4 R N N ? 4 U N N ? 4 X N N ? 4 LA N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n J NAG 1 J 1 NAG I 180 NAG 2 n J NAG 2 J 2 NAG I 181 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 47 A CYS 47 1_555 A SG CYS 163 A CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf2 A SG CYS 110 A CYS 110 1_555 A SG CYS 123 A CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf3 B SG CYS 47 B CYS 47 1_555 B SG CYS 163 B CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf4 B SG CYS 110 B CYS 110 1_555 B SG CYS 123 B CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf5 C SG CYS 47 C CYS 47 1_555 C SG CYS 163 C CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf6 C SG CYS 110 C CYS 110 1_555 C SG CYS 123 C CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? disulf ? disulf7 D SG CYS 47 D CYS 47 1_555 D SG CYS 163 D CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf8 D SG CYS 110 D CYS 110 1_555 D SG CYS 123 D CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf9 E SG CYS 47 E CYS 47 1_555 E SG CYS 163 E CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf10 E SG CYS 110 E CYS 110 1_555 E SG CYS 123 E CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf11 F SG CYS 47 F CYS 47 1_555 F SG CYS 163 F CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf12 F SG CYS 110 F CYS 110 1_555 F SG CYS 123 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf13 G SG CYS 47 G CYS 47 1_555 G SG CYS 163 G CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf14 G SG CYS 110 G CYS 110 1_555 G SG CYS 123 G CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf15 H SG CYS 47 H CYS 47 1_555 H SG CYS 163 H CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf16 H SG CYS 110 H CYS 110 1_555 H SG CYS 123 H CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf17 I SG CYS 47 I CYS 47 1_555 I SG CYS 163 I CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf18 I SG CYS 110 I CYS 110 1_555 I SG CYS 123 I CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? covale ? covale1 A ND2 ASN 72 A ASN 72 1_555 K C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale2 B ND2 ASN 72 B ASN 72 1_555 P C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale3 C ND2 ASN 72 C ASN 72 1_555 Q C1 NAG . C NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale4 D ND2 ASN 72 D ASN 72 1_555 V C1 NAG . D NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale5 E ND2 ASN 72 E ASN 72 1_555 W C1 NAG . E NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale6 F ND2 ASN 72 F ASN 72 1_555 Z C1 NAG . F NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale7 G ND2 ASN 72 G ASN 72 1_555 EA C1 NAG . G NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale8 H ND2 ASN 72 H ASN 72 1_555 GA C1 NAG . H NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale9 I ND2 ASN 72 I ASN 72 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale10 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? # _chem_comp.formula 'C28 H44 O' _chem_comp.formula_weight 396.648 _chem_comp.id ERG _chem_comp.mon_nstd_flag . _chem_comp.name ERGOSTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6R4N _atom_sites.fract_transf_matrix[1][1] 0.004643 _atom_sites.fract_transf_matrix[1][2] 0.00268 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005361 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007704 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 3 NAG A 1 301 180 NAG NAG . L 4 ERG A 1 302 181 ERG ERG . M 5 SO4 A 1 303 182 SO4 SO4 . N 5 SO4 A 1 304 181 SO4 SO4 . O 5 SO4 A 1 305 182 SO4 SO4 . P 3 NAG B 1 301 180 NAG NAG . Q 3 NAG C 1 301 180 NAG NAG . R 4 ERG C 1 302 181 ERG ERG . S 5 SO4 C 1 303 182 SO4 SO4 . T 5 SO4 C 1 304 183 SO4 SO4 . U 4 ERG C 1 305 182 ERG ERG . V 3 NAG D 1 301 180 NAG NAG . W 3 NAG E 1 301 180 NAG NAG . X 4 ERG E 1 302 181 ERG ERG . Y 5 SO4 E 1 303 182 SO4 SO4 . Z 3 NAG F 1 301 180 NAG NAG . AA 5 SO4 F 1 302 181 SO4 SO4 . BA 5 SO4 F 1 303 182 SO4 SO4 . CA 5 SO4 F 1 304 183 SO4 SO4 . DA 5 SO4 F 1 305 184 SO4 SO4 . EA 3 NAG G 1 301 180 NAG NAG . FA 5 SO4 G 1 302 181 SO4 SO4 . GA 3 NAG H 1 301 180 NAG NAG . HA 5 SO4 H 1 302 181 SO4 SO4 . IA 5 SO4 H 1 303 182 SO4 SO4 . JA 5 SO4 H 1 304 183 SO4 SO4 . KA 5 SO4 I 1 303 182 SO4 SO4 . LA 4 ERG I 1 304 184 ERG ERG . MA 5 SO4 I 1 305 185 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ERG . . . U 4 -39.258 -36.888 42.968 1 102.63 ? C1 ERG 305 C 1 HETATM 2 C C2 ERG . . . U 4 -39.01 -35.598 42.202 1 91.95 ? C2 ERG 305 C 1 HETATM 3 C C3 ERG . . . U 4 -40.27 -35.235 41.462 1 91.11 ? C3 ERG 305 C 1 HETATM 4 C C4 ERG . . . U 4 -41.387 -34.942 42.447 1 93.99 ? C4 ERG 305 C 1 HETATM 5 C C5 ERG . . . U 4 -41.594 -36.023 43.494 1 96.31 ? C5 ERG 305 C 1 HETATM 6 C C6 ERG . . . U 4 -42.812 -36.197 44.034 1 82.91 ? C6 ERG 305 C 1 HETATM 7 C C7 ERG . . . U 4 -43.018 -37.198 45.033 1 77.52 ? C7 ERG 305 C 1 HETATM 8 C C8 ERG . . . U 4 -42.061 -38.086 45.339 1 87.16 ? C8 ERG 305 C 1 HETATM 9 C C9 ERG . . . U 4 -40.778 -38.144 44.51 1 100.73 ? C9 ERG 305 C 1 HETATM 10 C C10 ERG . . . U 4 -40.349 -36.724 44.042 1 106.03 ? C10 ERG 305 C 1 HETATM 11 C C11 ERG . . . U 4 -39.605 -38.988 45.055 1 102.17 ? C11 ERG 305 C 1 HETATM 12 C C12 ERG . . . U 4 -39.927 -40.005 46.15 1 104.09 ? C12 ERG 305 C 1 HETATM 13 C C13 ERG . . . U 4 -40.851 -39.41 47.219 1 98.47 ? C13 ERG 305 C 1 HETATM 14 C C14 ERG . . . U 4 -42.175 -39.113 46.459 1 88.75 ? C14 ERG 305 C 1 HETATM 15 C C15 ERG . . . U 4 -43.197 -38.962 47.576 1 78.12 ? C15 ERG 305 C 1 HETATM 16 C C16 ERG . . . U 4 -42.91 -40.263 48.324 1 82.59 ? C16 ERG 305 C 1 HETATM 17 C C17 ERG . . . U 4 -41.368 -40.409 48.326 1 87.39 ? C17 ERG 305 C 1 HETATM 18 C C18 ERG . . . U 4 -40.271 -38.085 47.754 1 98.29 ? C18 ERG 305 C 1 HETATM 19 C C19 ERG . . . U 4 -39.788 -35.881 45.204 1 110.53 ? C19 ERG 305 C 1 HETATM 20 C C20 ERG . . . U 4 -40.815 -40.355 49.772 1 84.52 ? C20 ERG 305 C 1 HETATM 21 C C21 ERG . . . U 4 -39.336 -39.985 49.894 1 94.35 ? C21 ERG 305 C 1 HETATM 22 C C22 ERG . . . U 4 -40.87 -41.714 50.424 1 77.68 ? C22 ERG 305 C 1 HETATM 23 C C23 ERG . . . U 4 -39.905 -42.617 50.358 1 78.22 ? C23 ERG 305 C 1 HETATM 24 C C24 ERG . . . U 4 -39.082 -43.153 51.52 1 78.32 ? C24 ERG 305 C 1 HETATM 25 C C25 ERG . . . U 4 -38.658 -44.631 51.359 1 78.62 ? C25 ERG 305 C 1 HETATM 26 C C26 ERG . . . U 4 -37.144 -44.785 51.166 1 76.79 ? C26 ERG 305 C 1 HETATM 27 C C27 ERG . . . U 4 -39.138 -45.536 52.499 1 58.71 ? C27 ERG 305 C 1 HETATM 28 C C28 ERG . . . U 4 -37.869 -42.241 51.734 1 77.45 ? C28 ERG 305 C 1 HETATM 29 O O1 ERG . . . U 4 -40.037 -34.106 40.619 1 85.4 ? O1 ERG 305 C 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #