data_6R4S
#
_model_server_result.job_id            zuvbddw-BqjaWG-65qlnOQ 
_model_server_result.datetime_utc      '2024-11-25 13:48:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6r4s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":502}' 
#
_entry.id    6R4S 
#
_exptl.entry_id    6R4S 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6R4S 
_cell.length_a            110.13 
_cell.length_b            117.27 
_cell.length_c            151.23 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6R4S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    'C 2c 2' 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,K 1 1 
B,G,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 H N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 112 A ASP 109 1_555 D MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? 
metalc ? metalc2 A OD2 ASP 112 A ASP 109 1_555 E MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? 
metalc ? metalc3 A OD1 ASP 114 A ASP 111 1_555 D MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
metalc ? metalc4 A OD2 ASP 114 A ASP 111 1_555 E MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? 
metalc ? metalc5 A SG CYS 124 A CYS 121 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? 
metalc ? metalc6 A SG CYS 125 A CYS 122 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? 
metalc ? metalc7 A SG CYS 131 A CYS 128 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? 
metalc ? metalc8 A SG CYS 134 A CYS 131 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? 
metalc ? metalc9 A OD2 ASP 309 A ASP 306 1_555 E MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? 
metalc ? metalc10 D MN MN . A MN 502 1_555 F O2G ATP . A ATP 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? 
metalc ? metalc11 D MN MN . A MN 502 1_555 F O2B ATP . A ATP 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
metalc ? metalc12 D MN MN . A MN 502 1_555 F O2A ATP . A ATP 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc13 D MN MN . A MN 502 1_555 K O HOH . A HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? 
metalc ? metalc14 B OD1 ASP 112 E ASP 109 1_555 H MN MN . E MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? 
metalc ? metalc15 B OD2 ASP 112 E ASP 109 1_555 I MN MN . E MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? 
metalc ? metalc16 B OD1 ASP 114 E ASP 111 1_555 H MN MN . E MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? 
metalc ? metalc17 B OD2 ASP 114 E ASP 111 1_555 I MN MN . E MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? 
metalc ? metalc18 B SG CYS 124 E CYS 121 1_555 G ZN ZN . E ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? 
metalc ? metalc19 B SG CYS 125 E CYS 122 1_555 G ZN ZN . E ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? 
metalc ? metalc20 B SG CYS 131 E CYS 128 1_555 G ZN ZN . E ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc21 B SG CYS 134 E CYS 131 1_555 G ZN ZN . E ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? 
metalc ? metalc22 B OD2 ASP 309 E ASP 306 1_555 I MN MN . E MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? 
metalc ? metalc23 H MN MN . E MN 502 1_555 J O2G ATP . E ATP 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
metalc ? metalc24 H MN MN . E MN 502 1_555 J O2A ATP . E ATP 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc25 H MN MN . E MN 502 1_555 J O2B ATP . E ATP 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? 
metalc ? metalc26 H MN MN . E MN 502 1_555 L O HOH . E HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? 
metalc ? metalc27 I MN MN . E MN 503 1_555 J O2A ATP . E ATP 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6R4S 
_atom_sites.fract_transf_matrix[1][1]    0.00908 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008527 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006612 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 501 430 ZN ZN . 
D 3 MN A 1 502 1 MN MN . 
E 3 MN A 1 503 1 MN MN . 
F 4 ATP A 1 504 1 ATP ATP . 
G 2 ZN E 1 501 430 ZN ZN . 
H 3 MN E 1 502 1 MN MN . 
I 3 MN E 1 503 1 MN MN . 
J 4 ATP E 1 504 1 ATP ATP . 
K 5 HOH A 1 601 21 HOH HOH . 
K 5 HOH A 2 602 4 HOH HOH . 
K 5 HOH A 3 603 2 HOH HOH . 
K 5 HOH A 4 604 36 HOH HOH . 
K 5 HOH A 5 605 14 HOH HOH . 
K 5 HOH A 6 606 3 HOH HOH . 
K 5 HOH A 7 607 15 HOH HOH . 
K 5 HOH A 8 608 20 HOH HOH . 
K 5 HOH A 9 609 16 HOH HOH . 
K 5 HOH A 10 610 37 HOH HOH . 
K 5 HOH A 11 611 33 HOH HOH . 
K 5 HOH A 12 612 34 HOH HOH . 
K 5 HOH A 13 613 45 HOH HOH . 
K 5 HOH A 14 614 35 HOH HOH . 
K 5 HOH A 15 615 17 HOH HOH . 
K 5 HOH A 16 616 8 HOH HOH . 
K 5 HOH A 17 617 18 HOH HOH . 
K 5 HOH A 18 618 10 HOH HOH . 
K 5 HOH A 19 619 6 HOH HOH . 
K 5 HOH A 20 620 44 HOH HOH . 
K 5 HOH A 21 621 32 HOH HOH . 
K 5 HOH A 22 622 31 HOH HOH . 
K 5 HOH A 23 623 46 HOH HOH . 
L 5 HOH E 1 601 30 HOH HOH . 
L 5 HOH E 2 602 38 HOH HOH . 
L 5 HOH E 3 603 11 HOH HOH . 
L 5 HOH E 4 604 19 HOH HOH . 
L 5 HOH E 5 605 26 HOH HOH . 
L 5 HOH E 6 606 23 HOH HOH . 
L 5 HOH E 7 607 12 HOH HOH . 
L 5 HOH E 8 608 29 HOH HOH . 
L 5 HOH E 9 609 5 HOH HOH . 
L 5 HOH E 10 610 40 HOH HOH . 
L 5 HOH E 11 611 41 HOH HOH . 
L 5 HOH E 12 612 9 HOH HOH . 
L 5 HOH E 13 613 39 HOH HOH . 
L 5 HOH E 14 614 22 HOH HOH . 
L 5 HOH E 15 615 7 HOH HOH . 
L 5 HOH E 16 616 1 HOH HOH . 
L 5 HOH E 17 617 27 HOH HOH . 
L 5 HOH E 18 618 28 HOH HOH . 
L 5 HOH E 19 619 43 HOH HOH . 
L 5 HOH E 20 620 42 HOH HOH . 
L 5 HOH E 21 621 24 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         H 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -5.501 
_atom_site.Cartn_y               33.839 
_atom_site.Cartn_z               10.447 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        106.71 
_atom_site.pdbx_formal_charge    2 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           502 
_atom_site.auth_asym_id          E 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#