data_6R4S # _model_server_result.job_id h7Yde9URa4HVfYxTpvVU1w _model_server_result.datetime_utc '2024-11-29 05:02:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6r4s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":504}' # _entry.id 6R4S # _exptl.entry_id 6R4S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6R4S _cell.length_a 110.13 _cell.length_b 117.27 _cell.length_c 151.23 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6R4S _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,K 1 1 B,G,H,I,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 112 A ASP 109 1_555 D MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc2 A OD2 ASP 112 A ASP 109 1_555 E MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc3 A OD1 ASP 114 A ASP 111 1_555 D MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc4 A OD2 ASP 114 A ASP 111 1_555 E MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc5 A SG CYS 124 A CYS 121 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc6 A SG CYS 125 A CYS 122 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc7 A SG CYS 131 A CYS 128 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc8 A SG CYS 134 A CYS 131 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc9 A OD2 ASP 309 A ASP 306 1_555 E MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc10 D MN MN . A MN 502 1_555 F O2G ATP . A ATP 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc11 D MN MN . A MN 502 1_555 F O2B ATP . A ATP 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc12 D MN MN . A MN 502 1_555 F O2A ATP . A ATP 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc13 D MN MN . A MN 502 1_555 K O HOH . A HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc14 B OD1 ASP 112 E ASP 109 1_555 H MN MN . E MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc15 B OD2 ASP 112 E ASP 109 1_555 I MN MN . E MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc16 B OD1 ASP 114 E ASP 111 1_555 H MN MN . E MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc17 B OD2 ASP 114 E ASP 111 1_555 I MN MN . E MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc18 B SG CYS 124 E CYS 121 1_555 G ZN ZN . E ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc19 B SG CYS 125 E CYS 122 1_555 G ZN ZN . E ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc20 B SG CYS 131 E CYS 128 1_555 G ZN ZN . E ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc21 B SG CYS 134 E CYS 131 1_555 G ZN ZN . E ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc22 B OD2 ASP 309 E ASP 306 1_555 I MN MN . E MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc23 H MN MN . E MN 502 1_555 J O2G ATP . E ATP 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc24 H MN MN . E MN 502 1_555 J O2A ATP . E ATP 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc25 H MN MN . E MN 502 1_555 J O2B ATP . E ATP 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? metalc ? metalc26 H MN MN . E MN 502 1_555 L O HOH . E HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc27 I MN MN . E MN 503 1_555 J O2A ATP . E ATP 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 6R4S _atom_sites.fract_transf_matrix[1][1] 0.00908 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008527 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006612 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 501 430 ZN ZN . D 3 MN A 1 502 1 MN MN . E 3 MN A 1 503 1 MN MN . F 4 ATP A 1 504 1 ATP ATP . G 2 ZN E 1 501 430 ZN ZN . H 3 MN E 1 502 1 MN MN . I 3 MN E 1 503 1 MN MN . J 4 ATP E 1 504 1 ATP ATP . K 5 HOH A 1 601 21 HOH HOH . K 5 HOH A 2 602 4 HOH HOH . K 5 HOH A 3 603 2 HOH HOH . K 5 HOH A 4 604 36 HOH HOH . K 5 HOH A 5 605 14 HOH HOH . K 5 HOH A 6 606 3 HOH HOH . K 5 HOH A 7 607 15 HOH HOH . K 5 HOH A 8 608 20 HOH HOH . K 5 HOH A 9 609 16 HOH HOH . K 5 HOH A 10 610 37 HOH HOH . K 5 HOH A 11 611 33 HOH HOH . K 5 HOH A 12 612 34 HOH HOH . K 5 HOH A 13 613 45 HOH HOH . K 5 HOH A 14 614 35 HOH HOH . K 5 HOH A 15 615 17 HOH HOH . K 5 HOH A 16 616 8 HOH HOH . K 5 HOH A 17 617 18 HOH HOH . K 5 HOH A 18 618 10 HOH HOH . K 5 HOH A 19 619 6 HOH HOH . K 5 HOH A 20 620 44 HOH HOH . K 5 HOH A 21 621 32 HOH HOH . K 5 HOH A 22 622 31 HOH HOH . K 5 HOH A 23 623 46 HOH HOH . L 5 HOH E 1 601 30 HOH HOH . L 5 HOH E 2 602 38 HOH HOH . L 5 HOH E 3 603 11 HOH HOH . L 5 HOH E 4 604 19 HOH HOH . L 5 HOH E 5 605 26 HOH HOH . L 5 HOH E 6 606 23 HOH HOH . L 5 HOH E 7 607 12 HOH HOH . L 5 HOH E 8 608 29 HOH HOH . L 5 HOH E 9 609 5 HOH HOH . L 5 HOH E 10 610 40 HOH HOH . L 5 HOH E 11 611 41 HOH HOH . L 5 HOH E 12 612 9 HOH HOH . L 5 HOH E 13 613 39 HOH HOH . L 5 HOH E 14 614 22 HOH HOH . L 5 HOH E 15 615 7 HOH HOH . L 5 HOH E 16 616 1 HOH HOH . L 5 HOH E 17 617 27 HOH HOH . L 5 HOH E 18 618 28 HOH HOH . L 5 HOH E 19 619 43 HOH HOH . L 5 HOH E 20 620 42 HOH HOH . L 5 HOH E 21 621 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . J 4 -7.002 36.712 9.606 1 123.84 ? PG ATP 504 E 1 HETATM 2 O O1G ATP . . . J 4 -8.029 37.161 8.649 1 124.56 ? O1G ATP 504 E 1 HETATM 3 O O2G ATP . . . J 4 -6.925 35.171 9.709 1 124.37 ? O2G ATP 504 E 1 HETATM 4 O O3G ATP . . . J 4 -7.253 37.24 11.017 1 125.29 ? O3G ATP 504 E 1 HETATM 5 P PB ATP . . . J 4 -4.194 36.455 9.03 1 125.58 ? PB ATP 504 E 1 HETATM 6 O O1B ATP . . . J 4 -3.062 37.383 9.118 1 125.73 ? O1B ATP 504 E 1 HETATM 7 O O2B ATP . . . J 4 -4.257 35.306 10.045 1 124.59 ? O2B ATP 504 E 1 HETATM 8 O O3B ATP . . . J 4 -5.574 37.241 9.141 1 124.07 ? O3B ATP 504 E 1 HETATM 9 P PA ATP . . . J 4 -4.898 34.471 6.98 1 131.34 ? PA ATP 504 E 1 HETATM 10 O O1A ATP . . . J 4 -5.81 34.763 5.846 1 132.37 ? O1A ATP 504 E 1 HETATM 11 O O2A ATP . . . J 4 -5.52 33.688 8.154 1 132.59 ? O2A ATP 504 E 1 HETATM 12 O O3A ATP . . . J 4 -4.257 35.802 7.578 1 129.07 ? O3A ATP 504 E 1 HETATM 13 O O5' ATP . . . J 4 -3.599 33.637 6.553 1 132.01 ? O5' ATP 504 E 1 HETATM 14 C C5' ATP . . . J 4 -2.481 33.634 7.478 1 131.44 ? C5' ATP 504 E 1 HETATM 15 C C4' ATP . . . J 4 -1.192 34.007 6.806 1 128.82 ? C4' ATP 504 E 1 HETATM 16 O O4' ATP . . . J 4 -1.158 33.532 5.455 1 127.69 ? O4' ATP 504 E 1 HETATM 17 C C3' ATP . . . J 4 -0.988 35.511 6.684 1 126.31 ? C3' ATP 504 E 1 HETATM 18 O O3' ATP . . . J 4 -0.417 36.078 7.86 1 124.42 ? O3' ATP 504 E 1 HETATM 19 C C2' ATP . . . J 4 -0.081 35.645 5.452 1 126.03 ? C2' ATP 504 E 1 HETATM 20 O O2' ATP . . . J 4 1.255 35.923 5.843 1 125.69 ? O2' ATP 504 E 1 HETATM 21 C C1' ATP . . . J 4 -0.158 34.267 4.784 1 126.53 ? C1' ATP 504 E 1 HETATM 22 N N9 ATP . . . J 4 -0.531 34.37 3.383 1 126.67 ? N9 ATP 504 E 1 HETATM 23 C C8 ATP . . . J 4 -1.795 34.631 2.916 1 126.95 ? C8 ATP 504 E 1 HETATM 24 N N7 ATP . . . J 4 -1.859 34.768 1.613 1 127.22 ? N7 ATP 504 E 1 HETATM 25 C C5 ATP . . . J 4 -0.555 34.58 1.193 1 127 ? C5 ATP 504 E 1 HETATM 26 C C6 ATP . . . J 4 0.047 34.613 -0.077 1 127.08 ? C6 ATP 504 E 1 HETATM 27 N N6 ATP . . . J 4 -0.622 34.859 -1.206 1 127.43 ? N6 ATP 504 E 1 HETATM 28 N N1 ATP . . . J 4 1.377 34.4 -0.15 1 126.91 ? N1 ATP 504 E 1 HETATM 29 C C2 ATP . . . J 4 2.057 34.171 0.982 1 127.2 ? C2 ATP 504 E 1 HETATM 30 N N3 ATP . . . J 4 1.596 34.116 2.236 1 127.41 ? N3 ATP 504 E 1 HETATM 31 C C4 ATP . . . J 4 0.28 34.329 2.273 1 126.95 ? C4 ATP 504 E 1 HETATM 32 H "H5'1" ATP . . . J 4 -2.359 32.646 7.919 1 157.73 ? "H5'1" ATP 504 E 1 HETATM 33 H "H5'2" ATP . . . J 4 -2.658 34.342 8.286 1 157.73 ? "H5'2" ATP 504 E 1 HETATM 34 H H4' ATP . . . J 4 -0.354 33.492 7.273 1 154.58 ? H4' ATP 504 E 1 HETATM 35 H H3' ATP . . . J 4 -1.933 36.034 6.547 1 151.57 ? H3' ATP 504 E 1 HETATM 36 H HO3' ATP . . . J 4 0.343 35.497 8.128 1 149.31 ? HO3' ATP 504 E 1 HETATM 37 H H2' ATP . . . J 4 -0.479 36.423 4.802 1 151.24 ? H2' ATP 504 E 1 HETATM 38 H HO2' ATP . . . J 4 1.71 36.304 5.046 1 150.83 ? HO2' ATP 504 E 1 HETATM 39 H H1' ATP . . . J 4 0.778 33.716 4.867 1 151.83 ? H1' ATP 504 E 1 HETATM 40 H H8 ATP . . . J 4 -2.651 34.712 3.584 1 152.34 ? H8 ATP 504 E 1 HETATM 41 H HN61 ATP . . . J 4 -0.15 34.874 -2.104 1 152.92 ? HN61 ATP 504 E 1 HETATM 42 H HN62 ATP . . . J 4 -1.622 35.036 -1.196 1 152.92 ? HN62 ATP 504 E 1 HETATM 43 H H2 ATP . . . J 4 3.125 34.011 0.843 1 152.64 ? H2 ATP 504 E 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 43 #