data_6R4T
#
_model_server_result.job_id            vkngREKAavKW-7pRizFjgQ 
_model_server_result.datetime_utc      '2024-11-25 13:25:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6r4t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":505}' 
#
_entry.id    6R4T 
#
_exptl.entry_id    6R4T 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6R4T 
_cell.length_a            111.09 
_cell.length_b            118.97 
_cell.length_c            150.72 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6R4T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    'C 2c 2' 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,K 1 1 
B,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 F N N 
? 5 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 112 A ASP 109 1_555 D MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? 
metalc ? metalc2 A OD1 ASP 114 A ASP 111 1_555 D MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? 
metalc ? metalc3 A SG CYS 124 A CYS 121 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? 
metalc ? metalc4 A SG CYS 125 A CYS 122 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
metalc ? metalc5 A SG CYS 131 A CYS 128 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? 
metalc ? metalc6 A SG CYS 134 A CYS 131 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? 
metalc ? metalc7 D MN MN . A MN 502 1_555 E O2B HEJ . A HEJ 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? 
metalc ? metalc8 D MN MN . A MN 502 1_555 E O2G HEJ . A HEJ 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? 
metalc ? metalc9 D MN MN . A MN 502 1_555 E O2A HEJ . A HEJ 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? 
metalc ? metalc10 D MN MN . A MN 502 1_555 K O HOH . A HOH 612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? 
metalc ? metalc11 B OD1 ASP 112 D ASP 109 1_555 I MN MN . D MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? 
metalc ? metalc12 B OD1 ASP 114 D ASP 111 1_555 I MN MN . D MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
metalc ? metalc13 B SG CYS 124 D CYS 121 1_555 H ZN ZN . D ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc14 B SG CYS 125 D CYS 122 1_555 H ZN ZN . D ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc15 B SG CYS 131 D CYS 128 1_555 H ZN ZN . D ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc16 B SG CYS 134 D CYS 131 1_555 H ZN ZN . D ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? 
metalc ? metalc17 I MN MN . D MN 502 1_555 J O2A HEJ . D HEJ 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? 
metalc ? metalc18 I MN MN . D MN 502 1_555 J O2G HEJ . D HEJ 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? 
metalc ? metalc19 I MN MN . D MN 502 1_555 J O2B HEJ . D HEJ 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc20 I MN MN . D MN 502 1_555 L O HOH . D HOH 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     6R4T 
_atom_sites.fract_transf_matrix[1][1]    0.009002 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008405 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006635 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 501 430 ZN ZN . 
D 3 MN A 1 502 1 MN MN . 
E 4 HEJ A 1 503 1 HEJ HEJ . 
F 5 EDO A 1 504 1 EDO EDO . 
G 5 EDO A 1 505 2 EDO EDO . 
H 2 ZN D 1 501 430 ZN ZN . 
I 3 MN D 1 502 1 MN MN . 
J 4 HEJ D 1 503 1 HEJ HEJ . 
K 6 HOH A 1 601 26 HOH HOH . 
K 6 HOH A 2 602 77 HOH HOH . 
K 6 HOH A 3 603 35 HOH HOH . 
K 6 HOH A 4 604 48 HOH HOH . 
K 6 HOH A 5 605 22 HOH HOH . 
K 6 HOH A 6 606 15 HOH HOH . 
K 6 HOH A 7 607 32 HOH HOH . 
K 6 HOH A 8 608 30 HOH HOH . 
K 6 HOH A 9 609 37 HOH HOH . 
K 6 HOH A 10 610 47 HOH HOH . 
K 6 HOH A 11 611 33 HOH HOH . 
K 6 HOH A 12 612 80 HOH HOH . 
K 6 HOH A 13 613 27 HOH HOH . 
K 6 HOH A 14 614 81 HOH HOH . 
K 6 HOH A 15 615 36 HOH HOH . 
K 6 HOH A 16 616 43 HOH HOH . 
K 6 HOH A 17 617 14 HOH HOH . 
K 6 HOH A 18 618 64 HOH HOH . 
K 6 HOH A 19 619 9 HOH HOH . 
K 6 HOH A 20 620 46 HOH HOH . 
K 6 HOH A 21 621 34 HOH HOH . 
K 6 HOH A 22 622 39 HOH HOH . 
K 6 HOH A 23 623 50 HOH HOH . 
K 6 HOH A 24 624 44 HOH HOH . 
K 6 HOH A 25 625 49 HOH HOH . 
L 6 HOH D 1 601 10 HOH HOH . 
L 6 HOH D 2 602 59 HOH HOH . 
L 6 HOH D 3 603 54 HOH HOH . 
L 6 HOH D 4 604 21 HOH HOH . 
L 6 HOH D 5 605 55 HOH HOH . 
L 6 HOH D 6 606 78 HOH HOH . 
L 6 HOH D 7 607 11 HOH HOH . 
L 6 HOH D 8 608 51 HOH HOH . 
L 6 HOH D 9 609 66 HOH HOH . 
L 6 HOH D 10 610 1 HOH HOH . 
L 6 HOH D 11 611 52 HOH HOH . 
L 6 HOH D 12 612 73 HOH HOH . 
L 6 HOH D 13 613 7 HOH HOH . 
L 6 HOH D 14 614 68 HOH HOH . 
L 6 HOH D 15 615 5 HOH HOH . 
L 6 HOH D 16 616 58 HOH HOH . 
L 6 HOH D 17 617 3 HOH HOH . 
L 6 HOH D 18 618 2 HOH HOH . 
L 6 HOH D 19 619 6 HOH HOH . 
L 6 HOH D 20 620 82 HOH HOH . 
L 6 HOH D 21 621 12 HOH HOH . 
L 6 HOH D 22 622 70 HOH HOH . 
L 6 HOH D 23 623 20 HOH HOH . 
L 6 HOH D 24 624 19 HOH HOH . 
L 6 HOH D 25 625 13 HOH HOH . 
L 6 HOH D 26 626 74 HOH HOH . 
L 6 HOH D 27 627 4 HOH HOH . 
L 6 HOH D 28 628 17 HOH HOH . 
L 6 HOH D 29 629 16 HOH HOH . 
L 6 HOH D 30 630 72 HOH HOH . 
L 6 HOH D 31 631 56 HOH HOH . 
L 6 HOH D 32 632 57 HOH HOH . 
L 6 HOH D 33 633 67 HOH HOH . 
L 6 HOH D 34 634 45 HOH HOH . 
L 6 HOH D 35 635 53 HOH HOH . 
L 6 HOH D 36 636 61 HOH HOH . 
L 6 HOH D 37 637 29 HOH HOH . 
L 6 HOH D 38 638 38 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . G 5 24.907 -5.049 12.455 1 128.92 ? C1 EDO 505 A 1 
HETATM 2 O O1 EDO . . . G 5 25.003 -6.474 12.566 1 129.09 ? O1 EDO 505 A 1 
HETATM 3 C C2 EDO . . . G 5 26.146 -4.539 11.734 1 129.75 ? C2 EDO 505 A 1 
HETATM 4 O O2 EDO . . . G 5 27.222 -4.517 12.678 1 131.68 ? O2 EDO 505 A 1 
HETATM 5 H H11 EDO . . . G 5 24.008 -4.775 11.898 1 154.68 ? H11 EDO 505 A 1 
HETATM 6 H H12 EDO . . . G 5 24.837 -4.598 13.448 1 154.68 ? H12 EDO 505 A 1 
HETATM 7 H HO1 EDO . . . G 5 24.509 -6.771 13.343 1 154.88 ? HO1 EDO 505 A 1 
HETATM 8 H H21 EDO . . . G 5 26.392 -5.194 10.895 1 155.67 ? H21 EDO 505 A 1 
HETATM 9 H H22 EDO . . . G 5 25.969 -3.538 11.338 1 155.67 ? H22 EDO 505 A 1 
HETATM 10 H HO2 EDO . . . G 5 28.033 -4.825 12.25 1 157.99 ? HO2 EDO 505 A 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           10 
#