data_6R5L # _model_server_result.job_id XKKhkWUAARvbIadJjmF_nQ _model_server_result.datetime_utc '2025-03-13 17:43:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6r5l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":305}' # _entry.id 6R5L # _exptl.entry_id 6R5L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 294.439 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[[(2~{S})-1-azanylpropan-2-yl]amino]-6-(sulfanylmethyl)-1-benzothiophene-2-carboximidamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6R5L _cell.length_a 81.55 _cell.length_b 111.98 _cell.length_c 62.4 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6R5L _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 43 A CYS 38 1_555 G S09 JT2 . A JT2 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.868 ? covale ? covale2 B C LYS 5 P LYS 386 1_555 B N TPO 6 P TPO 387 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 B C TPO 6 P TPO 387 1_555 B N GLU 7 P GLU 388 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? metalc ? metalc1 A OE1 GLU 7 A GLU 2 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc2 A OE1 GLU 7 A GLU 2 1_555 D MG MG . A MG 302 3_654 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc3 A OE2 GLU 94 A GLU 89 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc4 C MG MG . A MG 301 1_555 H O HOH . A HOH 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc5 C MG MG . A MG 301 1_555 H O HOH . A HOH 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc6 D MG MG . A MG 302 1_555 H O HOH . A HOH 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc7 D MG MG . A MG 302 1_555 H O HOH . A HOH 487 3_654 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc8 D MG MG . A MG 302 1_555 H O HOH . A HOH 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? metalc ? metalc9 D MG MG . A MG 302 1_555 H O HOH . A HOH 527 3_654 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? # _chem_comp.formula 'C13 H18 N4 S2' _chem_comp.formula_weight 294.439 _chem_comp.id JT2 _chem_comp.mon_nstd_flag . _chem_comp.name 4-[[(2~{S})-1-azanylpropan-2-yl]amino]-6-(sulfanylmethyl)-1-benzothiophene-2-carboximidamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S01 C02 JT2 sing 186 n y S01 C16 JT2 sing 187 n y N18 C17 JT2 doub 188 n n C07 C02 JT2 doub 189 n y C07 C06 JT2 sing 190 n y C08 C06 JT2 sing 191 n n C08 S09 JT2 sing 192 n n C02 C03 JT2 sing 193 n y C06 C05 JT2 doub 194 n y C17 C16 JT2 sing 195 n n C17 N19 JT2 sing 196 n n C16 C15 JT2 doub 197 n y C03 C15 JT2 sing 198 n y C03 C04 JT2 doub 199 n y C05 C04 JT2 sing 200 n y C04 N10 JT2 sing 201 n n N10 C11 JT2 sing 202 n n C11 C14 JT2 sing 203 n n C11 C12 JT2 sing 204 n n C12 N13 JT2 sing 205 n n C15 H1 JT2 sing 206 n n C05 H2 JT2 sing 207 n n C07 H3 JT2 sing 208 n n C08 H4 JT2 sing 209 n n C08 H5 JT2 sing 210 n n C11 H6 JT2 sing 211 n n C12 H7 JT2 sing 212 n n C12 H8 JT2 sing 213 n n C14 H9 JT2 sing 214 n n C14 H10 JT2 sing 215 n n C14 H11 JT2 sing 216 n n N10 H12 JT2 sing 217 n n N13 H13 JT2 sing 218 n n N13 H14 JT2 sing 219 n n N18 H16 JT2 sing 220 n n N19 H17 JT2 sing 221 n n N19 H18 JT2 sing 222 n n S09 H19 JT2 sing 223 n n # _atom_sites.entry_id 6R5L _atom_sites.fract_transf_matrix[1][1] 0.012262 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00893 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016026 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 301 250 MG MG . D 3 MG A 1 302 251 MG MG . E 4 CL A 1 303 252 CL CL . F 5 GOL A 1 304 253 GOL GOL . G 6 JT2 A 1 305 1 JT2 LIG . H 7 HOH A 1 401 114 HOH HOH . H 7 HOH A 2 402 100 HOH HOH . H 7 HOH A 3 403 91 HOH HOH . H 7 HOH A 4 404 132 HOH HOH . H 7 HOH A 5 405 86 HOH HOH . H 7 HOH A 6 406 133 HOH HOH . H 7 HOH A 7 407 147 HOH HOH . H 7 HOH A 8 408 48 HOH HOH . H 7 HOH A 9 409 144 HOH HOH . H 7 HOH A 10 410 163 HOH HOH . H 7 HOH A 11 411 102 HOH HOH . H 7 HOH A 12 412 13 HOH HOH . H 7 HOH A 13 413 64 HOH HOH . H 7 HOH A 14 414 123 HOH HOH . H 7 HOH A 15 415 53 HOH HOH . H 7 HOH A 16 416 36 HOH HOH . H 7 HOH A 17 417 57 HOH HOH . H 7 HOH A 18 418 95 HOH HOH . H 7 HOH A 19 419 25 HOH HOH . H 7 HOH A 20 420 17 HOH HOH . H 7 HOH A 21 421 97 HOH HOH . H 7 HOH A 22 422 107 HOH HOH . H 7 HOH A 23 423 61 HOH HOH . H 7 HOH A 24 424 4 HOH HOH . H 7 HOH A 25 425 71 HOH HOH . H 7 HOH A 26 426 22 HOH HOH . H 7 HOH A 27 427 41 HOH HOH . H 7 HOH A 28 428 45 HOH HOH . H 7 HOH A 29 429 108 HOH HOH . H 7 HOH A 30 430 21 HOH HOH . H 7 HOH A 31 431 85 HOH HOH . H 7 HOH A 32 432 2 HOH HOH . H 7 HOH A 33 433 12 HOH HOH . H 7 HOH A 34 434 44 HOH HOH . H 7 HOH A 35 435 52 HOH HOH . H 7 HOH A 36 436 112 HOH HOH . H 7 HOH A 37 437 30 HOH HOH . H 7 HOH A 38 438 38 HOH HOH . H 7 HOH A 39 439 60 HOH HOH . H 7 HOH A 40 440 120 HOH HOH . H 7 HOH A 41 441 1 HOH HOH . H 7 HOH A 42 442 72 HOH HOH . H 7 HOH A 43 443 15 HOH HOH . H 7 HOH A 44 444 35 HOH HOH . H 7 HOH A 45 445 139 HOH HOH . H 7 HOH A 46 446 7 HOH HOH . H 7 HOH A 47 447 42 HOH HOH . H 7 HOH A 48 448 50 HOH HOH . H 7 HOH A 49 449 70 HOH HOH . H 7 HOH A 50 450 125 HOH HOH . H 7 HOH A 51 451 34 HOH HOH . H 7 HOH A 52 452 14 HOH HOH . H 7 HOH A 53 453 18 HOH HOH . H 7 HOH A 54 454 101 HOH HOH . H 7 HOH A 55 455 90 HOH HOH . H 7 HOH A 56 456 169 HOH HOH . H 7 HOH A 57 457 116 HOH HOH . H 7 HOH A 58 458 83 HOH HOH . H 7 HOH A 59 459 121 HOH HOH . H 7 HOH A 60 460 32 HOH HOH . H 7 HOH A 61 461 37 HOH HOH . H 7 HOH A 62 462 130 HOH HOH . H 7 HOH A 63 463 31 HOH HOH . H 7 HOH A 64 464 29 HOH HOH . H 7 HOH A 65 465 110 HOH HOH . H 7 HOH A 66 466 131 HOH HOH . H 7 HOH A 67 467 24 HOH HOH . H 7 HOH A 68 468 55 HOH HOH . H 7 HOH A 69 469 166 HOH HOH . H 7 HOH A 70 470 160 HOH HOH . H 7 HOH A 71 471 135 HOH HOH . H 7 HOH A 72 472 54 HOH HOH . H 7 HOH A 73 473 26 HOH HOH . H 7 HOH A 74 474 76 HOH HOH . H 7 HOH A 75 475 98 HOH HOH . H 7 HOH A 76 476 68 HOH HOH . H 7 HOH A 77 477 28 HOH HOH . H 7 HOH A 78 478 140 HOH HOH . H 7 HOH A 79 479 119 HOH HOH . H 7 HOH A 80 480 80 HOH HOH . H 7 HOH A 81 481 137 HOH HOH . H 7 HOH A 82 482 6 HOH HOH . H 7 HOH A 83 483 51 HOH HOH . H 7 HOH A 84 484 8 HOH HOH . H 7 HOH A 85 485 56 HOH HOH . H 7 HOH A 86 486 79 HOH HOH . H 7 HOH A 87 487 9 HOH HOH . H 7 HOH A 88 488 58 HOH HOH . H 7 HOH A 89 489 20 HOH HOH . H 7 HOH A 90 490 138 HOH HOH . H 7 HOH A 91 491 154 HOH HOH . H 7 HOH A 92 492 63 HOH HOH . H 7 HOH A 93 493 170 HOH HOH . H 7 HOH A 94 494 142 HOH HOH . H 7 HOH A 95 495 10 HOH HOH . H 7 HOH A 96 496 126 HOH HOH . H 7 HOH A 97 497 82 HOH HOH . H 7 HOH A 98 498 109 HOH HOH . H 7 HOH A 99 499 88 HOH HOH . H 7 HOH A 100 500 65 HOH HOH . H 7 HOH A 101 501 106 HOH HOH . H 7 HOH A 102 502 168 HOH HOH . H 7 HOH A 103 503 129 HOH HOH . H 7 HOH A 104 504 49 HOH HOH . H 7 HOH A 105 505 171 HOH HOH . H 7 HOH A 106 506 59 HOH HOH . H 7 HOH A 107 507 23 HOH HOH . H 7 HOH A 108 508 150 HOH HOH . H 7 HOH A 109 509 74 HOH HOH . H 7 HOH A 110 510 69 HOH HOH . H 7 HOH A 111 511 99 HOH HOH . H 7 HOH A 112 512 118 HOH HOH . H 7 HOH A 113 513 77 HOH HOH . H 7 HOH A 114 514 5 HOH HOH . H 7 HOH A 115 515 16 HOH HOH . H 7 HOH A 116 516 78 HOH HOH . H 7 HOH A 117 517 104 HOH HOH . H 7 HOH A 118 518 47 HOH HOH . H 7 HOH A 119 519 141 HOH HOH . H 7 HOH A 120 520 39 HOH HOH . H 7 HOH A 121 521 92 HOH HOH . H 7 HOH A 122 522 103 HOH HOH . H 7 HOH A 123 523 43 HOH HOH . H 7 HOH A 124 524 96 HOH HOH . H 7 HOH A 125 525 122 HOH HOH . H 7 HOH A 126 526 159 HOH HOH . H 7 HOH A 127 527 152 HOH HOH . H 7 HOH A 128 528 73 HOH HOH . H 7 HOH A 129 529 134 HOH HOH . H 7 HOH A 130 530 33 HOH HOH . H 7 HOH A 131 531 19 HOH HOH . H 7 HOH A 132 532 111 HOH HOH . H 7 HOH A 133 533 145 HOH HOH . H 7 HOH A 134 534 93 HOH HOH . H 7 HOH A 135 535 128 HOH HOH . H 7 HOH A 136 536 143 HOH HOH . H 7 HOH A 137 537 75 HOH HOH . H 7 HOH A 138 538 27 HOH HOH . H 7 HOH A 139 539 146 HOH HOH . H 7 HOH A 140 540 127 HOH HOH . H 7 HOH A 141 541 62 HOH HOH . H 7 HOH A 142 542 46 HOH HOH . H 7 HOH A 143 543 66 HOH HOH . H 7 HOH A 144 544 11 HOH HOH . H 7 HOH A 145 545 94 HOH HOH . H 7 HOH A 146 546 40 HOH HOH . I 7 HOH P 1 401 89 HOH HOH . I 7 HOH P 2 402 3 HOH HOH . I 7 HOH P 3 403 136 HOH HOH . I 7 HOH P 4 404 84 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C15 JT2 . . . G 6 19.207 18.453 -5.743 1 36.28 ? C15 JT2 305 A 1 HETATM 2 C C17 JT2 . . . G 6 20.369 16.252 -6.652 1 29.83 ? C17 JT2 305 A 1 HETATM 3 C C02 JT2 . . . G 6 19.885 20.251 -7.082 1 30.12 ? C02 JT2 305 A 1 HETATM 4 C C03 JT2 . . . G 6 19.123 19.856 -6.02 1 36.97 ? C03 JT2 305 A 1 HETATM 5 C C04 JT2 . . . G 6 18.36 20.841 -5.33 1 37.75 ? C04 JT2 305 A 1 HETATM 6 C C05 JT2 . . . G 6 18.401 22.167 -5.737 1 33.33 ? C05 JT2 305 A 1 HETATM 7 C C06 JT2 . . . G 6 19.199 22.53 -6.817 1 30.32 ? C06 JT2 305 A 1 HETATM 8 C C07 JT2 . . . G 6 19.928 21.571 -7.488 1 25.41 ? C07 JT2 305 A 1 HETATM 9 C C08 JT2 . . . G 6 19.263 23.952 -7.355 1 32.67 ? C08 JT2 305 A 1 HETATM 10 C C11 JT2 . . . G 6 16.466 21.343 -3.761 1 46.73 ? C11 JT2 305 A 1 HETATM 11 C C12 JT2 . . . G 6 16.97 22.11 -2.54 1 46.96 ? C12 JT2 305 A 1 HETATM 12 C C14 JT2 . . . G 6 15.226 20.51 -3.437 1 54.08 ? C14 JT2 305 A 1 HETATM 13 C C16 JT2 . . . G 6 20.048 17.738 -6.582 1 33.16 ? C16 JT2 305 A 1 HETATM 14 N N10 JT2 . . . G 6 17.533 20.46 -4.2 1 41.53 ? N10 JT2 305 A 1 HETATM 15 N N13 JT2 . . . G 6 17.932 21.299 -1.814 1 42.74 ? N13 JT2 305 A 1 HETATM 16 N N18 JT2 . . . G 6 20.993 15.84 -7.653 1 22.32 ? N18 JT2 305 A 1 HETATM 17 N N19 JT2 . . . G 6 19.892 15.294 -5.667 1 28.26 ? N19 JT2 305 A 1 HETATM 18 S S01 JT2 . . . G 6 20.712 18.858 -7.72 1 38.75 ? S01 JT2 305 A 1 HETATM 19 S S09 JT2 . . . G 6 20.047 25.054 -6.189 1 50.07 ? S09 JT2 305 A 1 # _model_server_stats.io_time_ms 729 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 21 _model_server_stats.element_count 19 #