data_6R65 # _model_server_result.job_id uV4PUF1kLPxeU0YOYhVugQ _model_server_result.datetime_utc '2025-01-16 03:02:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6r65 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 6R65 # _exptl.entry_id 6R65 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6R65 _cell.length_a 113.158 _cell.length_b 152.267 _cell.length_c 153.703 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6R65 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 259 A GLU 259 1_555 E CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc2 A OD1 ASN 444 A ASN 444 1_555 C CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc3 A OE1 GLN 445 A GLN 445 1_555 C CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.792 ? metalc ? metalc4 A OE1 GLU 448 A GLU 448 1_555 C CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.935 ? metalc ? metalc5 A OE2 GLU 448 A GLU 448 1_555 D CA CA . A CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc6 A OD1 ASP 497 A ASP 497 1_555 D CA CA . A CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.754 ? metalc ? metalc7 A OE1 GLU 500 A GLU 500 1_555 C CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.198 ? metalc ? metalc8 A OE2 GLU 500 A GLU 500 1_555 C CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc9 A OE1 GLU 500 A GLU 500 1_555 D CA CA . A CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.033 ? metalc ? metalc10 A OE1 GLU 529 A GLU 529 1_555 C CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc11 A OE2 GLU 529 A GLU 529 1_555 C CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.748 ? metalc ? metalc12 A OE2 GLU 529 A GLU 529 1_555 D CA CA . A CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc13 A OD1 ASP 533 A ASP 533 1_555 D CA CA . A CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.809 ? metalc ? metalc14 A OD2 ASP 533 A ASP 533 1_555 D CA CA . A CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc15 A O ALA 610 A ALA 610 1_555 E CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc16 A O ILE 613 A ILE 613 1_555 E CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc17 A OD1 ASP 615 A ASP 615 1_555 E CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc18 B OE1 GLU 259 B GLU 259 1_555 H CA CA . B CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc19 B OD1 ASN 444 B ASN 444 1_555 F CA CA . B CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc20 B OE1 GLN 445 B GLN 445 1_555 F CA CA . B CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc21 B OE1 GLU 448 B GLU 448 1_555 F CA CA . B CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? metalc ? metalc22 B OE2 GLU 448 B GLU 448 1_555 G CA CA . B CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc23 B OD1 ASP 497 B ASP 497 1_555 G CA CA . B CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.925 ? metalc ? metalc24 B OE2 GLU 500 B GLU 500 1_555 F CA CA . B CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? metalc ? metalc25 B OE1 GLU 500 B GLU 500 1_555 G CA CA . B CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.009 ? metalc ? metalc26 B OE1 GLU 529 B GLU 529 1_555 F CA CA . B CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc27 B OE2 GLU 529 B GLU 529 1_555 F CA CA . B CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? metalc ? metalc28 B OE2 GLU 529 B GLU 529 1_555 G CA CA . B CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc29 B OD1 ASP 533 B ASP 533 1_555 G CA CA . B CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.836 ? metalc ? metalc30 B OD2 ASP 533 B ASP 533 1_555 G CA CA . B CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? metalc ? metalc31 B O ALA 610 B ALA 610 1_555 H CA CA . B CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc32 B O ILE 613 B ILE 613 1_555 H CA CA . B CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc33 B OD1 ASP 615 B ASP 615 1_555 H CA CA . B CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6R65 _atom_sites.fract_transf_matrix[1][1] 0.008837 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006567 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006506 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 701 701 CA CA . D 2 CA A 1 702 702 CA CA . E 2 CA A 1 703 703 CA CA . F 2 CA B 1 701 701 CA CA . G 2 CA B 1 702 702 CA CA . H 2 CA B 1 703 703 CA CA . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -63.303 _atom_site.Cartn_y -9.415 _atom_site.Cartn_z -17.865 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 92.23 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 701 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 36 _model_server_stats.create_model_time_ms 75 _model_server_stats.query_time_ms 374 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #