data_6R6K # _model_server_result.job_id eBqzhZNRd1QgzfCIpe4sjg _model_server_result.datetime_utc '2025-03-13 17:05:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6r6k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":404}' # _entry.id 6R6K # _exptl.entry_id 6R6K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.16 _cell.angle_gamma 90 _cell.entry_id 6R6K _cell.length_a 155.27 _cell.length_b 53.56 _cell.length_c 84.39 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6R6K _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,NA 1 1 B,MA,OA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 226 A GLU 262 1_555 F NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.133 ? metalc ? metalc2 A O LEU 245 A LEU 281 1_555 E NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.17 ? metalc ? metalc3 G NA NA . A NA 405 1_555 U O1 EDO . A EDO 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.193 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6R6K _atom_sites.fract_transf_matrix[1][1] 0.00644 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000356 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018671 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011868 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 401 1 NA NA . D 2 NA A 1 402 2 NA NA . E 2 NA A 1 403 3 NA NA . F 2 NA A 1 404 4 NA NA . G 2 NA A 1 405 5 NA NA . H 2 NA A 1 406 6 NA NA . I 3 EDO A 1 407 10 EDO EDO . J 3 EDO A 1 408 11 EDO EDO . K 3 EDO A 1 409 12 EDO EDO . L 3 EDO A 1 410 14 EDO EDO . M 3 EDO A 1 411 15 EDO EDO . N 3 EDO A 1 412 16 EDO EDO . O 3 EDO A 1 413 17 EDO EDO . P 3 EDO A 1 414 18 EDO EDO . Q 3 EDO A 1 415 19 EDO EDO . R 3 EDO A 1 416 20 EDO EDO . S 3 EDO A 1 417 21 EDO EDO . T 3 EDO A 1 418 23 EDO EDO . U 3 EDO A 1 419 24 EDO EDO . V 3 EDO A 1 420 25 EDO EDO . W 3 EDO A 1 421 27 EDO EDO . X 3 EDO A 1 422 28 EDO EDO . Y 3 EDO A 1 423 29 EDO EDO . Z 3 EDO A 1 424 30 EDO EDO . AA 3 EDO A 1 425 31 EDO EDO . BA 3 EDO A 1 426 33 EDO EDO . CA 4 GOL A 1 427 1 GOL GOL . DA 4 GOL A 1 428 2 GOL GOL . EA 4 GOL A 1 429 3 GOL GOL . FA 4 GOL A 1 430 4 GOL GOL . GA 4 GOL A 1 431 5 GOL GOL . HA 5 PEG A 1 432 1 PEG PEG . IA 5 PEG A 1 433 2 PEG PEG . JA 5 PEG A 1 434 3 PEG PEG . KA 5 PEG A 1 435 4 PEG PEG . LA 5 PEG A 1 436 5 PEG PEG . MA 3 EDO B 1 401 5 EDO EDO . NA 6 HOH A 1 501 153 HOH HOH . NA 6 HOH A 2 502 261 HOH HOH . NA 6 HOH A 3 503 124 HOH HOH . NA 6 HOH A 4 504 23 HOH HOH . NA 6 HOH A 5 505 121 HOH HOH . NA 6 HOH A 6 506 191 HOH HOH . NA 6 HOH A 7 507 8 HOH HOH . NA 6 HOH A 8 508 128 HOH HOH . NA 6 HOH A 9 509 127 HOH HOH . NA 6 HOH A 10 510 119 HOH HOH . NA 6 HOH A 11 511 146 HOH HOH . NA 6 HOH A 12 512 241 HOH HOH . NA 6 HOH A 13 513 224 HOH HOH . NA 6 HOH A 14 514 147 HOH HOH . NA 6 HOH A 15 515 202 HOH HOH . NA 6 HOH A 16 516 129 HOH HOH . NA 6 HOH A 17 517 156 HOH HOH . NA 6 HOH A 18 518 144 HOH HOH . NA 6 HOH A 19 519 137 HOH HOH . NA 6 HOH A 20 520 189 HOH HOH . NA 6 HOH A 21 521 211 HOH HOH . NA 6 HOH A 22 522 167 HOH HOH . NA 6 HOH A 23 523 110 HOH HOH . NA 6 HOH A 24 524 74 HOH HOH . NA 6 HOH A 25 525 109 HOH HOH . NA 6 HOH A 26 526 126 HOH HOH . NA 6 HOH A 27 527 158 HOH HOH . NA 6 HOH A 28 528 138 HOH HOH . NA 6 HOH A 29 529 185 HOH HOH . NA 6 HOH A 30 530 270 HOH HOH . NA 6 HOH A 31 531 59 HOH HOH . NA 6 HOH A 32 532 245 HOH HOH . NA 6 HOH A 33 533 64 HOH HOH . NA 6 HOH A 34 534 20 HOH HOH . NA 6 HOH A 35 535 39 HOH HOH . NA 6 HOH A 36 536 111 HOH HOH . NA 6 HOH A 37 537 155 HOH HOH . NA 6 HOH A 38 538 7 HOH HOH . NA 6 HOH A 39 539 101 HOH HOH . NA 6 HOH A 40 540 206 HOH HOH . NA 6 HOH A 41 541 265 HOH HOH . NA 6 HOH A 42 542 45 HOH HOH . NA 6 HOH A 43 543 21 HOH HOH . NA 6 HOH A 44 544 212 HOH HOH . NA 6 HOH A 45 545 10 HOH HOH . NA 6 HOH A 46 546 151 HOH HOH . NA 6 HOH A 47 547 15 HOH HOH . NA 6 HOH A 48 548 40 HOH HOH . NA 6 HOH A 49 549 25 HOH HOH . NA 6 HOH A 50 550 131 HOH HOH . NA 6 HOH A 51 551 96 HOH HOH . NA 6 HOH A 52 552 230 HOH HOH . NA 6 HOH A 53 553 16 HOH HOH . NA 6 HOH A 54 554 197 HOH HOH . NA 6 HOH A 55 555 209 HOH HOH . NA 6 HOH A 56 556 236 HOH HOH . NA 6 HOH A 57 557 263 HOH HOH . NA 6 HOH A 58 558 130 HOH HOH . NA 6 HOH A 59 559 227 HOH HOH . NA 6 HOH A 60 560 145 HOH HOH . NA 6 HOH A 61 561 62 HOH HOH . NA 6 HOH A 62 562 13 HOH HOH . NA 6 HOH A 63 563 122 HOH HOH . NA 6 HOH A 64 564 120 HOH HOH . NA 6 HOH A 65 565 203 HOH HOH . NA 6 HOH A 66 566 48 HOH HOH . NA 6 HOH A 67 567 219 HOH HOH . NA 6 HOH A 68 568 234 HOH HOH . NA 6 HOH A 69 569 140 HOH HOH . NA 6 HOH A 70 570 249 HOH HOH . NA 6 HOH A 71 571 68 HOH HOH . NA 6 HOH A 72 572 205 HOH HOH . NA 6 HOH A 73 573 27 HOH HOH . NA 6 HOH A 74 574 135 HOH HOH . NA 6 HOH A 75 575 198 HOH HOH . NA 6 HOH A 76 576 154 HOH HOH . NA 6 HOH A 77 577 102 HOH HOH . NA 6 HOH A 78 578 24 HOH HOH . NA 6 HOH A 79 579 113 HOH HOH . NA 6 HOH A 80 580 267 HOH HOH . NA 6 HOH A 81 581 133 HOH HOH . NA 6 HOH A 82 582 97 HOH HOH . NA 6 HOH A 83 583 75 HOH HOH . NA 6 HOH A 84 584 29 HOH HOH . NA 6 HOH A 85 585 82 HOH HOH . NA 6 HOH A 86 586 134 HOH HOH . NA 6 HOH A 87 587 117 HOH HOH . NA 6 HOH A 88 588 218 HOH HOH . NA 6 HOH A 89 589 255 HOH HOH . NA 6 HOH A 90 590 56 HOH HOH . NA 6 HOH A 91 591 194 HOH HOH . NA 6 HOH A 92 592 67 HOH HOH . NA 6 HOH A 93 593 149 HOH HOH . NA 6 HOH A 94 594 179 HOH HOH . NA 6 HOH A 95 595 139 HOH HOH . NA 6 HOH A 96 596 264 HOH HOH . NA 6 HOH A 97 597 193 HOH HOH . NA 6 HOH A 98 598 215 HOH HOH . NA 6 HOH A 99 599 86 HOH HOH . NA 6 HOH A 100 600 165 HOH HOH . NA 6 HOH A 101 601 36 HOH HOH . NA 6 HOH A 102 602 252 HOH HOH . NA 6 HOH A 103 603 81 HOH HOH . NA 6 HOH A 104 604 35 HOH HOH . NA 6 HOH A 105 605 235 HOH HOH . NA 6 HOH A 106 606 220 HOH HOH . NA 6 HOH A 107 607 41 HOH HOH . NA 6 HOH A 108 608 32 HOH HOH . NA 6 HOH A 109 609 43 HOH HOH . NA 6 HOH A 110 610 161 HOH HOH . NA 6 HOH A 111 611 222 HOH HOH . NA 6 HOH A 112 612 72 HOH HOH . NA 6 HOH A 113 613 225 HOH HOH . NA 6 HOH A 114 614 232 HOH HOH . NA 6 HOH A 115 615 231 HOH HOH . NA 6 HOH A 116 616 237 HOH HOH . NA 6 HOH A 117 617 256 HOH HOH . NA 6 HOH A 118 618 164 HOH HOH . NA 6 HOH A 119 619 37 HOH HOH . NA 6 HOH A 120 620 214 HOH HOH . NA 6 HOH A 121 621 87 HOH HOH . NA 6 HOH A 122 622 240 HOH HOH . NA 6 HOH A 123 623 177 HOH HOH . NA 6 HOH A 124 624 160 HOH HOH . NA 6 HOH A 125 625 38 HOH HOH . NA 6 HOH A 126 626 210 HOH HOH . NA 6 HOH A 127 627 238 HOH HOH . NA 6 HOH A 128 628 254 HOH HOH . NA 6 HOH A 129 629 229 HOH HOH . NA 6 HOH A 130 630 143 HOH HOH . NA 6 HOH A 131 631 258 HOH HOH . NA 6 HOH A 132 632 226 HOH HOH . NA 6 HOH A 133 633 44 HOH HOH . NA 6 HOH A 134 634 247 HOH HOH . NA 6 HOH A 135 635 63 HOH HOH . NA 6 HOH A 136 636 125 HOH HOH . NA 6 HOH A 137 637 104 HOH HOH . NA 6 HOH A 138 638 260 HOH HOH . NA 6 HOH A 139 639 233 HOH HOH . NA 6 HOH A 140 640 217 HOH HOH . NA 6 HOH A 141 641 207 HOH HOH . NA 6 HOH A 142 642 148 HOH HOH . NA 6 HOH A 143 643 90 HOH HOH . NA 6 HOH A 144 644 132 HOH HOH . NA 6 HOH A 145 645 162 HOH HOH . NA 6 HOH A 146 646 239 HOH HOH . NA 6 HOH A 147 647 178 HOH HOH . NA 6 HOH A 148 648 257 HOH HOH . NA 6 HOH A 149 649 88 HOH HOH . NA 6 HOH A 150 650 171 HOH HOH . NA 6 HOH A 151 651 172 HOH HOH . NA 6 HOH A 152 652 196 HOH HOH . OA 6 HOH B 1 501 271 HOH HOH . OA 6 HOH B 2 502 186 HOH HOH . OA 6 HOH B 3 503 169 HOH HOH . OA 6 HOH B 4 504 188 HOH HOH . OA 6 HOH B 5 505 244 HOH HOH . OA 6 HOH B 6 506 170 HOH HOH . OA 6 HOH B 7 507 93 HOH HOH . OA 6 HOH B 8 508 192 HOH HOH . OA 6 HOH B 9 509 112 HOH HOH . OA 6 HOH B 10 510 183 HOH HOH . OA 6 HOH B 11 511 269 HOH HOH . OA 6 HOH B 12 512 223 HOH HOH . OA 6 HOH B 13 513 250 HOH HOH . OA 6 HOH B 14 514 184 HOH HOH . OA 6 HOH B 15 515 175 HOH HOH . OA 6 HOH B 16 516 107 HOH HOH . OA 6 HOH B 17 517 176 HOH HOH . OA 6 HOH B 18 518 180 HOH HOH . OA 6 HOH B 19 519 123 HOH HOH . OA 6 HOH B 20 520 251 HOH HOH . OA 6 HOH B 21 521 268 HOH HOH . OA 6 HOH B 22 522 243 HOH HOH . OA 6 HOH B 23 523 242 HOH HOH . OA 6 HOH B 24 524 266 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x -15.758 _atom_site.Cartn_y -18.234 _atom_site.Cartn_z 32.34 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 69.15 _atom_site.pdbx_formal_charge 1 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 404 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #