data_6R6W # _model_server_result.job_id 4pVJFLoUMMB5dFaSGW68dg _model_server_result.datetime_utc '2024-10-25 20:28:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6r6w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":617}' # _entry.id 6R6W # _exptl.entry_id 6R6W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6R6W _cell.length_a 154.22 _cell.length_b 154.22 _cell.length_c 127.85 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6R6W _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 J N N ? 7 K N N ? 7 L N N ? 7 M N N ? 7 N N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 FUC NAG C1 O1 . O6 HO6 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 600 NAG 2 n B FUC 2 B 2 FUC A 609 FUC 3 n C NAG 1 C 1 NAG A 605 NAG 3 n C NAG 2 C 2 NAG A 602 NAG 3 n C FUC 3 C 3 FUC A 610 FUC 3 n D NAG 1 D 1 NAG A 603 NAG 3 n D NAG 2 D 2 NAG A 607 NAG 3 n D FUC 3 D 3 FUC A 608 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 62 A CYS 65 1_555 A SG CYS 89 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf2 A SG CYS 249 A CYS 252 1_555 A SG CYS 260 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf3 A SG CYS 397 A CYS 400 1_555 A SG CYS 516 A CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? covale ? covale1 A ND2 ASN 54 A ASN 57 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale2 A ND2 ASN 103 A ASN 106 1_555 E C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale3 A ND2 ASN 238 A ASN 241 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale4 A ND2 ASN 253 A ASN 256 1_555 F C1 NAG . A NAG 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale5 A ND2 ASN 338 A ASN 341 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale6 A ND2 ASN 482 A ASN 485 1_555 G C1 NAG . A NAG 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale7 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale8 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale9 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale10 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? covale ? covale11 D O6 NAG . D NAG 1 1_555 D C1 FUC . D FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 461 n n S O2 SO4 doub 462 n n S O3 SO4 sing 463 n n S O4 SO4 sing 464 n n # _atom_sites.entry_id 6R6W _atom_sites.fract_transf_matrix[1][1] 0.006484 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006484 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007822 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 NAG A 1 603 601 NAG NAG . F 4 NAG A 1 610 604 NAG NAG . G 4 NAG A 1 611 606 NAG NAG . H 5 JUB A 1 612 701 JUB MH4 . I 6 GOL A 1 613 800 GOL GOL . J 7 SO4 A 1 614 801 SO4 SO4 . K 7 SO4 A 1 615 802 SO4 SO4 . L 7 SO4 A 1 616 803 SO4 SO4 . M 7 SO4 A 1 617 804 SO4 SO4 . N 7 SO4 A 1 618 805 SO4 SO4 . O 8 DMS A 1 619 901 DMS DMS . P 9 HOH A 1 701 45 HOH HOH . P 9 HOH A 2 702 71 HOH HOH . P 9 HOH A 3 703 43 HOH HOH . P 9 HOH A 4 704 91 HOH HOH . P 9 HOH A 5 705 83 HOH HOH . P 9 HOH A 6 706 28 HOH HOH . P 9 HOH A 7 707 24 HOH HOH . P 9 HOH A 8 708 26 HOH HOH . P 9 HOH A 9 709 84 HOH HOH . P 9 HOH A 10 710 82 HOH HOH . P 9 HOH A 11 711 57 HOH HOH . P 9 HOH A 12 712 58 HOH HOH . P 9 HOH A 13 713 67 HOH HOH . P 9 HOH A 14 714 55 HOH HOH . P 9 HOH A 15 715 3 HOH HOH . P 9 HOH A 16 716 48 HOH HOH . P 9 HOH A 17 717 80 HOH HOH . P 9 HOH A 18 718 72 HOH HOH . P 9 HOH A 19 719 27 HOH HOH . P 9 HOH A 20 720 22 HOH HOH . P 9 HOH A 21 721 25 HOH HOH . P 9 HOH A 22 722 78 HOH HOH . P 9 HOH A 23 723 65 HOH HOH . P 9 HOH A 24 724 16 HOH HOH . P 9 HOH A 25 725 68 HOH HOH . P 9 HOH A 26 726 56 HOH HOH . P 9 HOH A 27 727 2 HOH HOH . P 9 HOH A 28 728 13 HOH HOH . P 9 HOH A 29 729 89 HOH HOH . P 9 HOH A 30 730 10 HOH HOH . P 9 HOH A 31 731 77 HOH HOH . P 9 HOH A 32 732 63 HOH HOH . P 9 HOH A 33 733 73 HOH HOH . P 9 HOH A 34 734 4 HOH HOH . P 9 HOH A 35 735 17 HOH HOH . P 9 HOH A 36 736 62 HOH HOH . P 9 HOH A 37 737 21 HOH HOH . P 9 HOH A 38 738 18 HOH HOH . P 9 HOH A 39 739 47 HOH HOH . P 9 HOH A 40 740 9 HOH HOH . P 9 HOH A 41 741 5 HOH HOH . P 9 HOH A 42 742 20 HOH HOH . P 9 HOH A 43 743 59 HOH HOH . P 9 HOH A 44 744 46 HOH HOH . P 9 HOH A 45 745 7 HOH HOH . P 9 HOH A 46 746 51 HOH HOH . P 9 HOH A 47 747 30 HOH HOH . P 9 HOH A 48 748 64 HOH HOH . P 9 HOH A 49 749 42 HOH HOH . P 9 HOH A 50 750 19 HOH HOH . P 9 HOH A 51 751 1 HOH HOH . P 9 HOH A 52 752 8 HOH HOH . P 9 HOH A 53 753 36 HOH HOH . P 9 HOH A 54 754 14 HOH HOH . P 9 HOH A 55 755 53 HOH HOH . P 9 HOH A 56 756 54 HOH HOH . P 9 HOH A 57 757 15 HOH HOH . P 9 HOH A 58 758 52 HOH HOH . P 9 HOH A 59 759 6 HOH HOH . P 9 HOH A 60 760 88 HOH HOH . P 9 HOH A 61 761 69 HOH HOH . P 9 HOH A 62 762 39 HOH HOH . P 9 HOH A 63 763 34 HOH HOH . P 9 HOH A 64 764 40 HOH HOH . P 9 HOH A 65 765 79 HOH HOH . P 9 HOH A 66 766 23 HOH HOH . P 9 HOH A 67 767 76 HOH HOH . P 9 HOH A 68 768 11 HOH HOH . P 9 HOH A 69 769 29 HOH HOH . P 9 HOH A 70 770 87 HOH HOH . P 9 HOH A 71 771 49 HOH HOH . P 9 HOH A 72 772 44 HOH HOH . P 9 HOH A 73 773 85 HOH HOH . P 9 HOH A 74 774 81 HOH HOH . P 9 HOH A 75 775 86 HOH HOH . P 9 HOH A 76 776 70 HOH HOH . P 9 HOH A 77 777 32 HOH HOH . P 9 HOH A 78 778 38 HOH HOH . P 9 HOH A 79 779 37 HOH HOH . P 9 HOH A 80 780 74 HOH HOH . P 9 HOH A 81 781 50 HOH HOH . P 9 HOH A 82 782 33 HOH HOH . P 9 HOH A 83 783 75 HOH HOH . P 9 HOH A 84 784 31 HOH HOH . P 9 HOH A 85 785 90 HOH HOH . P 9 HOH A 86 786 12 HOH HOH . P 9 HOH A 87 787 41 HOH HOH . P 9 HOH A 88 788 35 HOH HOH . P 9 HOH A 89 789 66 HOH HOH . P 9 HOH A 90 790 61 HOH HOH . P 9 HOH A 91 791 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . M 7 145.829 100.202 66.794 1 125.08 ? S SO4 617 A 1 HETATM 2 O O1 SO4 . . . M 7 146.411 99.265 65.824 1 113.39 ? O1 SO4 617 A 1 HETATM 3 O O2 SO4 . . . M 7 146.315 101.563 66.526 1 114.58 ? O2 SO4 617 A 1 HETATM 4 O O3 SO4 . . . M 7 146.247 99.795 68.136 1 126.13 -1 O3 SO4 617 A 1 HETATM 5 O O4 SO4 . . . M 7 144.362 100.174 66.721 1 102.47 ? O4 SO4 617 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #