data_6R72 # _model_server_result.job_id KBNaCyNJCmgVgSLr2chQxA _model_server_result.datetime_utc '2024-12-27 02:31:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6r72 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":700}' # _entry.id 6R72 # _exptl.entry_id 6R72 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.23 _cell.angle_gamma 90 _cell.entry_id 6R72 _cell.length_a 117.805 _cell.length_b 110.754 _cell.length_c 155.615 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6R72 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H 1 1 C,D,I,J,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 391 A THR 381 1_555 F MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc2 A OE1 GLN 432 A GLN 422 1_555 F MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc3 E O1G ATP . A ATP 700 1_555 F MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.842 ? metalc ? metalc4 E O3G ATP . A ATP 700 1_555 F MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc5 E O2B ATP . A ATP 700 1_555 F MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? metalc ? metalc6 B OG1 THR 391 B THR 381 1_555 H MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc7 G O3G ATP . B ATP 700 1_555 H MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc8 G O2B ATP . B ATP 700 1_555 H MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc9 G O1A ATP . B ATP 700 1_555 H MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc10 C OG1 THR 391 C THR 381 1_555 J MG MG . C MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? metalc ? metalc11 C OE1 GLN 432 C GLN 422 1_555 J MG MG . C MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? metalc ? metalc12 I O3G ATP . C ATP 700 1_555 J MG MG . C MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? metalc ? metalc13 I O2B ATP . C ATP 700 1_555 J MG MG . C MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc14 D OG1 THR 391 D THR 381 1_555 L MG MG . D MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? metalc ? metalc15 D OE1 GLN 432 D GLN 422 1_555 L MG MG . D MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? metalc ? metalc16 K O3G ATP . D ATP 700 1_555 L MG MG . D MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? metalc ? metalc17 K O2B ATP . D ATP 700 1_555 L MG MG . D MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 6R72 _atom_sites.fract_transf_matrix[1][1] 0.008489 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000479 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009029 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006436 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ATP A 1 700 700 ATP ATP . F 3 MG A 1 701 701 MG MG . G 2 ATP B 1 700 700 ATP ATP . H 3 MG B 1 701 701 MG MG . I 2 ATP C 1 700 700 ATP ATP . J 3 MG C 1 701 701 MG MG . K 2 ATP D 1 700 700 ATP ATP . L 3 MG D 1 701 701 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . K 2 -9.908 14.777 77.725 1 45.72 ? PG ATP 700 D 1 HETATM 2 O O1G ATP . . . K 2 -10.104 16.26 77.773 1 44.76 ? O1G ATP 700 D 1 HETATM 3 O O2G ATP . . . K 2 -8.892 14.381 76.672 1 43.42 -1 O2G ATP 700 D 1 HETATM 4 O O3G ATP . . . K 2 -11.195 13.983 77.459 1 45.58 ? O3G ATP 700 D 1 HETATM 5 P PB ATP . . . K 2 -10.091 13.584 80.373 1 53.49 ? PB ATP 700 D 1 HETATM 6 O O1B ATP . . . K 2 -9.384 13.962 81.621 1 58.53 ? O1B ATP 700 D 1 HETATM 7 O O2B ATP . . . K 2 -11.532 14.103 80.385 1 51.21 ? O2B ATP 700 D 1 HETATM 8 O O3B ATP . . . K 2 -9.352 14.218 79.111 1 50.64 ? O3B ATP 700 D 1 HETATM 9 P PA ATP . . . K 2 -11.347 10.969 80.585 1 54.04 ? PA ATP 700 D 1 HETATM 10 O O1A ATP . . . K 2 -12.341 10.979 79.493 1 49.14 -1 O1A ATP 700 D 1 HETATM 11 O O2A ATP . . . K 2 -11.999 11.405 81.888 1 56.86 ? O2A ATP 700 D 1 HETATM 12 O O3A ATP . . . K 2 -10.18 11.999 80.25 1 54 ? O3A ATP 700 D 1 HETATM 13 O O5' ATP . . . K 2 -10.642 9.561 80.817 1 57.62 ? O5' ATP 700 D 1 HETATM 14 C C5' ATP . . . K 2 -9.933 8.987 79.709 1 55.88 ? C5' ATP 700 D 1 HETATM 15 C C4' ATP . . . K 2 -9.071 7.837 80.153 1 60.77 ? C4' ATP 700 D 1 HETATM 16 O O4' ATP . . . K 2 -9.897 6.855 80.813 1 63.43 ? O4' ATP 700 D 1 HETATM 17 C C3' ATP . . . K 2 -8.407 7.095 78.999 1 59.77 ? C3' ATP 700 D 1 HETATM 18 O O3' ATP . . . K 2 -7.173 7.705 78.632 1 59.97 ? O3' ATP 700 D 1 HETATM 19 C C2' ATP . . . K 2 -8.247 5.679 79.556 1 64.7 ? C2' ATP 700 D 1 HETATM 20 O O2' ATP . . . K 2 -7.041 5.526 80.296 1 70.3 ? O2' ATP 700 D 1 HETATM 21 C C1' ATP . . . K 2 -9.473 5.546 80.473 1 65.4 ? C1' ATP 700 D 1 HETATM 22 N N9 ATP . . . K 2 -10.599 4.772 79.933 1 62.89 ? N9 ATP 700 D 1 HETATM 23 C C8 ATP . . . K 2 -10.616 3.411 79.767 1 65.24 ? C8 ATP 700 D 1 HETATM 24 N N7 ATP . . . K 2 -11.759 2.937 79.336 1 62.87 ? N7 ATP 700 D 1 HETATM 25 C C5 ATP . . . K 2 -12.555 4.065 79.204 1 58.71 ? C5 ATP 700 D 1 HETATM 26 C C6 ATP . . . K 2 -13.9 4.239 78.803 1 55.23 ? C6 ATP 700 D 1 HETATM 27 N N6 ATP . . . K 2 -14.712 3.233 78.467 1 55.39 ? N6 ATP 700 D 1 HETATM 28 N N1 ATP . . . K 2 -14.396 5.5 78.794 1 52.2 ? N1 ATP 700 D 1 HETATM 29 C C2 ATP . . . K 2 -13.599 6.509 79.163 1 52.55 ? C2 ATP 700 D 1 HETATM 30 N N3 ATP . . . K 2 -12.323 6.465 79.563 1 55.64 ? N3 ATP 700 D 1 HETATM 31 C C4 ATP . . . K 2 -11.854 5.206 79.563 1 58.66 ? C4 ATP 700 D 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 31 #