data_6R72 # _model_server_result.job_id f3XhepSbmRk_y9Fll_vBfg _model_server_result.datetime_utc '2024-12-05 10:35:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6r72 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":700}' # _entry.id 6R72 # _exptl.entry_id 6R72 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.23 _cell.angle_gamma 90 _cell.entry_id 6R72 _cell.length_a 117.805 _cell.length_b 110.754 _cell.length_c 155.615 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6R72 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H 1 1 C,D,I,J,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 391 A THR 381 1_555 F MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc2 A OE1 GLN 432 A GLN 422 1_555 F MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc3 E O1G ATP . A ATP 700 1_555 F MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.842 ? metalc ? metalc4 E O3G ATP . A ATP 700 1_555 F MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc5 E O2B ATP . A ATP 700 1_555 F MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? metalc ? metalc6 B OG1 THR 391 B THR 381 1_555 H MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc7 G O3G ATP . B ATP 700 1_555 H MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc8 G O2B ATP . B ATP 700 1_555 H MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc9 G O1A ATP . B ATP 700 1_555 H MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc10 C OG1 THR 391 C THR 381 1_555 J MG MG . C MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? metalc ? metalc11 C OE1 GLN 432 C GLN 422 1_555 J MG MG . C MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? metalc ? metalc12 I O3G ATP . C ATP 700 1_555 J MG MG . C MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? metalc ? metalc13 I O2B ATP . C ATP 700 1_555 J MG MG . C MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc14 D OG1 THR 391 D THR 381 1_555 L MG MG . D MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? metalc ? metalc15 D OE1 GLN 432 D GLN 422 1_555 L MG MG . D MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? metalc ? metalc16 K O3G ATP . D ATP 700 1_555 L MG MG . D MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? metalc ? metalc17 K O2B ATP . D ATP 700 1_555 L MG MG . D MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 6R72 _atom_sites.fract_transf_matrix[1][1] 0.008489 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000479 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009029 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006436 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ATP A 1 700 700 ATP ATP . F 3 MG A 1 701 701 MG MG . G 2 ATP B 1 700 700 ATP ATP . H 3 MG B 1 701 701 MG MG . I 2 ATP C 1 700 700 ATP ATP . J 3 MG C 1 701 701 MG MG . K 2 ATP D 1 700 700 ATP ATP . L 3 MG D 1 701 701 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . I 2 -16.663 25.085 61.715 1 34.53 ? PG ATP 700 C 1 HETATM 2 O O1G ATP . . . I 2 -15.338 25.373 62.367 1 34.72 ? O1G ATP 700 C 1 HETATM 3 O O2G ATP . . . I 2 -17.835 25.277 62.669 1 34.94 -1 O2G ATP 700 C 1 HETATM 4 O O3G ATP . . . I 2 -16.764 23.664 61.146 1 31.76 ? O3G ATP 700 C 1 HETATM 5 P PB ATP . . . I 2 -16.667 25.915 58.931 1 38.61 ? PB ATP 700 C 1 HETATM 6 O O1B ATP . . . I 2 -16.305 27.219 58.327 1 42.69 -1 O1B ATP 700 C 1 HETATM 7 O O2B ATP . . . I 2 -15.556 24.876 58.742 1 36.23 ? O2B ATP 700 C 1 HETATM 8 O O3B ATP . . . I 2 -16.924 26.075 60.495 1 37.71 ? O3B ATP 700 C 1 HETATM 9 P PA ATP . . . I 2 -18.134 24.23 57.079 1 37.43 ? PA ATP 700 C 1 HETATM 10 O O1A ATP . . . I 2 -17.994 22.879 57.672 1 33.62 -1 O1A ATP 700 C 1 HETATM 11 O O2A ATP . . . I 2 -17.051 24.458 56.039 1 39.27 ? O2A ATP 700 C 1 HETATM 12 O O3A ATP . . . I 2 -17.962 25.332 58.215 1 38.25 ? O3A ATP 700 C 1 HETATM 13 O O5' ATP . . . I 2 -19.56 24.515 56.413 1 39.88 ? O5' ATP 700 C 1 HETATM 14 C C5' ATP . . . I 2 -20.705 24.353 57.266 1 39.34 ? C5' ATP 700 C 1 HETATM 15 C C4' ATP . . . I 2 -21.935 24.931 56.63 1 41.75 ? C4' ATP 700 C 1 HETATM 16 O O4' ATP . . . I 2 -22.146 24.286 55.359 1 40.66 ? O4' ATP 700 C 1 HETATM 17 C C3' ATP . . . I 2 -23.205 24.666 57.424 1 41.27 ? C3' ATP 700 C 1 HETATM 18 O O3' ATP . . . I 2 -23.393 25.666 58.42 1 43.81 ? O3' ATP 700 C 1 HETATM 19 C C2' ATP . . . I 2 -24.282 24.677 56.338 1 43.14 ? C2' ATP 700 C 1 HETATM 20 O O2' ATP . . . I 2 -24.732 25.998 56.048 1 48.12 ? O2' ATP 700 C 1 HETATM 21 C C1' ATP . . . I 2 -23.531 24.103 55.129 1 42.26 ? C1' ATP 700 C 1 HETATM 22 N N9 ATP . . . I 2 -23.806 22.698 54.812 1 39.75 ? N9 ATP 700 C 1 HETATM 23 C C8 ATP . . . I 2 -24.966 22.224 54.256 1 41.46 ? C8 ATP 700 C 1 HETATM 24 N N7 ATP . . . I 2 -24.941 20.945 53.971 1 39.02 ? N7 ATP 700 C 1 HETATM 25 C C5 ATP . . . I 2 -23.675 20.543 54.37 1 35.54 ? C5 ATP 700 C 1 HETATM 26 C C6 ATP . . . I 2 -23.017 19.294 54.33 1 32.35 ? C6 ATP 700 C 1 HETATM 27 N N6 ATP . . . I 2 -23.559 18.184 53.823 1 31.86 ? N6 ATP 700 C 1 HETATM 28 N N1 ATP . . . I 2 -21.757 19.23 54.823 1 30.13 ? N1 ATP 700 C 1 HETATM 29 C C2 ATP . . . I 2 -21.199 20.344 55.313 1 30.87 ? C2 ATP 700 C 1 HETATM 30 N N3 ATP . . . I 2 -21.716 21.575 55.393 1 33.65 ? N3 ATP 700 C 1 HETATM 31 C C4 ATP . . . I 2 -22.966 21.611 54.901 1 35.95 ? C4 ATP 700 C 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #