data_6R73 # _model_server_result.job_id SLU-1sbHHxX9gyc5HRjGHQ _model_server_result.datetime_utc '2024-11-24 15:52:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6r73 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 6R73 # _exptl.entry_id 6R73 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 401.478 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2~{S},3~{R},4~{S})-2-[(2~{S},3~{R})-1,3-bis(oxidanyl)-1-oxidanylidene-butan-2-yl]-4-[(3~{S},5~{S})-5-(dimethylcarbamoy l)pyrrolidin-3-yl]sulfanyl-3-methyl-3,4-dihydro-2~{H}-pyrrole-5-carboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.47 _cell.angle_gamma 90 _cell.entry_id 6R73 _cell.length_a 57.979 _cell.length_b 72.368 _cell.length_c 61.194 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6R73 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B NZ LYS 159 B LYS 161 1_555 F O31 LMP . B LMP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.305 ? metalc ? metalc1 A NE2 HIS 75 A HIS 77 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc2 A ND1 HIS 77 A HIS 79 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc3 A OD2 ASP 79 A ASP 81 1_555 E ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc4 A NE2 HIS 137 A HIS 139 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.883 ? metalc ? metalc5 A SG CYS 156 A CYS 158 1_555 E ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc6 A NE2 HIS 195 A HIS 197 1_555 E ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc7 C O72 LMP . A LMP 301 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.729 ? metalc ? metalc8 C N4 LMP . A LMP 301 1_555 E ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc9 B NE2 HIS 75 B HIS 77 1_555 G ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc10 B ND1 HIS 77 B HIS 79 1_555 G ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc11 B OD2 ASP 79 B ASP 81 1_555 H ZN ZN . B ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc12 B NE2 HIS 137 B HIS 139 1_555 G ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc13 B SG CYS 156 B CYS 158 1_555 H ZN ZN . B ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc14 B NE2 HIS 195 B HIS 197 1_555 H ZN ZN . B ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc15 F N4 LMP . B LMP 301 1_555 H ZN ZN . B ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.894 ? # _chem_comp.formula 'C17 H27 N3 O6 S' _chem_comp.formula_weight 401.478 _chem_comp.id LMP _chem_comp.mon_nstd_flag . _chem_comp.name '(2~{S},3~{R},4~{S})-2-[(2~{S},3~{R})-1,3-bis(oxidanyl)-1-oxidanylidene-butan-2-yl]-4-[(3~{S},5~{S})-5-(dimethylcarbamoy l)pyrrolidin-3-yl]sulfanyl-3-methyl-3,4-dihydro-2~{H}-pyrrole-5-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Hydrolyzed Meropenem' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O62 C61 LMP sing 194 n n C62 C61 LMP sing 195 n n C11 C1 LMP sing 196 n n C61 C6 LMP sing 197 n n O71 C7 LMP doub 198 n n C7 C6 LMP sing 199 n n C7 O72 LMP sing 200 n n C1 C2 LMP sing 201 n n C1 C5 LMP sing 202 n n C2 C3 LMP sing 203 n n C2 S21 LMP sing 204 n n C6 C5 LMP sing 205 n n C3 C31 LMP sing 206 n n C3 N4 LMP doub 207 n n O31 C31 LMP doub 208 n n C5 N4 LMP sing 209 n n C31 O32 LMP sing 210 n n S21 C1A LMP sing 211 n n C1A C2A LMP sing 212 n n C1A C4A LMP sing 213 n n C2A C5A LMP sing 214 n n C4A N3A LMP sing 215 n n O7A C6A LMP doub 216 n n N3A C5A LMP sing 217 n n C5A C6A LMP sing 218 n n C6A N7A LMP sing 219 n n C8A N7A LMP sing 220 n n N7A C9A LMP sing 221 n n C1 H1 LMP sing 222 n n C2 H2 LMP sing 223 n n C9A H3 LMP sing 224 n n C9A H4 LMP sing 225 n n C9A H5 LMP sing 226 n n C8A H6 LMP sing 227 n n C8A H7 LMP sing 228 n n C8A H8 LMP sing 229 n n C5A H9 LMP sing 230 n n C2A H10 LMP sing 231 n n C2A H11 LMP sing 232 n n N3A H12 LMP sing 233 n n C4A H14 LMP sing 234 n n C4A H15 LMP sing 235 n n C1A H16 LMP sing 236 n n O32 H17 LMP sing 237 n n C11 H18 LMP sing 238 n n C11 H19 LMP sing 239 n n C11 H20 LMP sing 240 n n C5 H21 LMP sing 241 n n C6 H22 LMP sing 242 n n C61 H23 LMP sing 243 n n O62 H24 LMP sing 244 n n C62 H25 LMP sing 245 n n C62 H26 LMP sing 246 n n C62 H27 LMP sing 247 n n O72 H28 LMP sing 248 n n # _atom_sites.entry_id 6R73 _atom_sites.fract_transf_matrix[1][1] 0.017248 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00576 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013818 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017229 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LMP A 1 301 301 LMP HYD . D 3 ZN A 1 302 3 ZN ZN . E 3 ZN A 1 303 4 ZN ZN . F 2 LMP B 1 301 301 LMP HYD . G 3 ZN B 1 302 5 ZN ZN . H 3 ZN B 1 303 6 ZN ZN . I 4 HOH A 1 401 31 HOH HOH . I 4 HOH A 2 402 147 HOH HOH . I 4 HOH A 3 403 159 HOH HOH . I 4 HOH A 4 404 33 HOH HOH . I 4 HOH A 5 405 37 HOH HOH . I 4 HOH A 6 406 85 HOH HOH . I 4 HOH A 7 407 134 HOH HOH . I 4 HOH A 8 408 69 HOH HOH . I 4 HOH A 9 409 155 HOH HOH . I 4 HOH A 10 410 21 HOH HOH . I 4 HOH A 11 411 53 HOH HOH . I 4 HOH A 12 412 9 HOH HOH . I 4 HOH A 13 413 26 HOH HOH . I 4 HOH A 14 414 145 HOH HOH . I 4 HOH A 15 415 30 HOH HOH . I 4 HOH A 16 416 8 HOH HOH . I 4 HOH A 17 417 57 HOH HOH . I 4 HOH A 18 418 1 HOH HOH . I 4 HOH A 19 419 105 HOH HOH . I 4 HOH A 20 420 44 HOH HOH . I 4 HOH A 21 421 13 HOH HOH . I 4 HOH A 22 422 153 HOH HOH . I 4 HOH A 23 423 17 HOH HOH . I 4 HOH A 24 424 146 HOH HOH . I 4 HOH A 25 425 42 HOH HOH . I 4 HOH A 26 426 144 HOH HOH . I 4 HOH A 27 427 7 HOH HOH . I 4 HOH A 28 428 32 HOH HOH . I 4 HOH A 29 429 36 HOH HOH . I 4 HOH A 30 430 40 HOH HOH . I 4 HOH A 31 431 46 HOH HOH . I 4 HOH A 32 432 84 HOH HOH . I 4 HOH A 33 433 150 HOH HOH . I 4 HOH A 34 434 15 HOH HOH . I 4 HOH A 35 435 67 HOH HOH . I 4 HOH A 36 436 89 HOH HOH . I 4 HOH A 37 437 137 HOH HOH . I 4 HOH A 38 438 157 HOH HOH . I 4 HOH A 39 439 158 HOH HOH . I 4 HOH A 40 440 131 HOH HOH . I 4 HOH A 41 441 87 HOH HOH . I 4 HOH A 42 442 56 HOH HOH . I 4 HOH A 43 443 28 HOH HOH . I 4 HOH A 44 444 64 HOH HOH . I 4 HOH A 45 445 22 HOH HOH . I 4 HOH A 46 446 24 HOH HOH . I 4 HOH A 47 447 94 HOH HOH . I 4 HOH A 48 448 70 HOH HOH . I 4 HOH A 49 449 149 HOH HOH . I 4 HOH A 50 450 65 HOH HOH . I 4 HOH A 51 451 110 HOH HOH . I 4 HOH A 52 452 140 HOH HOH . J 4 HOH B 1 401 142 HOH HOH . J 4 HOH B 2 402 154 HOH HOH . J 4 HOH B 3 403 152 HOH HOH . J 4 HOH B 4 404 20 HOH HOH . J 4 HOH B 5 405 2 HOH HOH . J 4 HOH B 6 406 151 HOH HOH . J 4 HOH B 7 407 136 HOH HOH . J 4 HOH B 8 408 148 HOH HOH . J 4 HOH B 9 409 45 HOH HOH . J 4 HOH B 10 410 4 HOH HOH . J 4 HOH B 11 411 23 HOH HOH . J 4 HOH B 12 412 52 HOH HOH . J 4 HOH B 13 413 5 HOH HOH . J 4 HOH B 14 414 138 HOH HOH . J 4 HOH B 15 415 141 HOH HOH . J 4 HOH B 16 416 43 HOH HOH . J 4 HOH B 17 417 18 HOH HOH . J 4 HOH B 18 418 143 HOH HOH . J 4 HOH B 19 419 35 HOH HOH . J 4 HOH B 20 420 76 HOH HOH . J 4 HOH B 21 421 49 HOH HOH . J 4 HOH B 22 422 99 HOH HOH . J 4 HOH B 23 423 139 HOH HOH . J 4 HOH B 24 424 34 HOH HOH . J 4 HOH B 25 425 50 HOH HOH . J 4 HOH B 26 426 12 HOH HOH . J 4 HOH B 27 427 80 HOH HOH . J 4 HOH B 28 428 156 HOH HOH . J 4 HOH B 29 429 11 HOH HOH . J 4 HOH B 30 430 38 HOH HOH . J 4 HOH B 31 431 14 HOH HOH . J 4 HOH B 32 432 135 HOH HOH . J 4 HOH B 33 433 6 HOH HOH . J 4 HOH B 34 434 16 HOH HOH . J 4 HOH B 35 435 19 HOH HOH . J 4 HOH B 36 436 29 HOH HOH . J 4 HOH B 37 437 27 HOH HOH . J 4 HOH B 38 438 25 HOH HOH . J 4 HOH B 39 439 41 HOH HOH . J 4 HOH B 40 440 132 HOH HOH . J 4 HOH B 41 441 79 HOH HOH . J 4 HOH B 42 442 58 HOH HOH . J 4 HOH B 43 443 133 HOH HOH . J 4 HOH B 44 444 123 HOH HOH . J 4 HOH B 45 445 48 HOH HOH . J 4 HOH B 46 446 130 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LMP . . . C 2 -5.491 -4.498 25.543 1 39.73 ? C1 LMP 301 A 1 HETATM 2 C C2 LMP . . . C 2 -5.34 -3.284 25.134 1 41.12 ? C2 LMP 301 A 1 HETATM 3 C C3 LMP . . . C 2 -3.943 -2.95 25.429 1 41.29 ? C3 LMP 301 A 1 HETATM 4 O O7A LMP . . . C 2 -3.041 -1.904 20.07 1 40.95 ? O7A LMP 301 A 1 HETATM 5 C C6A LMP . . . C 2 -4.135 -2.084 19.667 1 41.55 ? C6A LMP 301 A 1 HETATM 6 N N7A LMP . . . C 2 -4.641 -1.094 18.732 1 45.66 ? N7A LMP 301 A 1 HETATM 7 C C9A LMP . . . C 2 -5.963 -1.178 18.146 1 45.16 ? C9A LMP 301 A 1 HETATM 8 C C8A LMP . . . C 2 -3.783 0.023 18.384 1 40.58 ? C8A LMP 301 A 1 HETATM 9 C C5A LMP . . . C 2 -4.93 -3.348 20.137 1 40.98 ? C5A LMP 301 A 1 HETATM 10 C C2A LMP . . . C 2 -5.957 -3.077 20.887 1 42.09 ? C2A LMP 301 A 1 HETATM 11 N N3A LMP . . . C 2 -3.917 -4.26 21.027 1 40.32 ? N3A LMP 301 A 1 HETATM 12 C C4A LMP . . . C 2 -4.256 -4.097 22.268 1 40.11 ? C4A LMP 301 A 1 HETATM 13 C C1A LMP . . . C 2 -5.755 -3.777 22.252 1 43.13 ? C1A LMP 301 A 1 HETATM 14 S S21 LMP . . . C 2 -6.186 -2.712 23.605 1 41.44 ? S21 LMP 301 A 1 HETATM 15 C C31 LMP . . . C 2 -3.212 -1.705 24.927 1 43.25 ? C31 LMP 301 A 1 HETATM 16 O O31 LMP . . . C 2 -3.841 -0.763 24.374 1 38.52 ? O31 LMP 301 A 1 HETATM 17 O O32 LMP . . . C 2 -1.959 -1.623 25.087 1 40.4 -1 O32 LMP 301 A 1 HETATM 18 N N4 LMP . . . C 2 -3.456 -3.701 26.427 1 42.27 ? N4 LMP 301 A 1 HETATM 19 C C11 LMP . . . C 2 -7.059 -4.811 25.831 1 30.48 ? C11 LMP 301 A 1 HETATM 20 C C5 LMP . . . C 2 -4.55 -4.561 26.834 1 43.13 ? C5 LMP 301 A 1 HETATM 21 C C6 LMP . . . C 2 -5.113 -4.102 27.895 1 33.13 ? C6 LMP 301 A 1 HETATM 22 C C61 LMP . . . C 2 -5.208 -5.209 29.065 1 35.6 ? C61 LMP 301 A 1 HETATM 23 O O62 LMP . . . C 2 -3.933 -5.592 29.371 1 40.59 ? O62 LMP 301 A 1 HETATM 24 C C62 LMP . . . C 2 -6.009 -6.422 28.708 1 35.64 ? C62 LMP 301 A 1 HETATM 25 C C7 LMP . . . C 2 -4.234 -2.848 28.489 1 39.48 ? C7 LMP 301 A 1 HETATM 26 O O71 LMP . . . C 2 -4.704 -1.679 28.445 1 33.86 ? O71 LMP 301 A 1 HETATM 27 O O72 LMP . . . C 2 -3.085 -3.044 28.976 1 39.87 -1 O72 LMP 301 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 23 _model_server_stats.element_count 27 #