data_6R78
#
_model_server_result.job_id            claRXD1Qf3TPirMjD5zX3w 
_model_server_result.datetime_utc      '2024-11-07 13:05:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6r78 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":410}' 
#
_entry.id    6R78 
#
_exptl.entry_id    6R78 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          112.67 
_cell.angle_gamma         90 
_cell.entry_id            6R78 
_cell.length_a            60.79 
_cell.length_b            73.12 
_cell.length_c            64.21 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6R78 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,M,U 1 1 
B,N,O,P,Q,R,S,T,V 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      7 
_struct_asym.id                             L 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O THR 39 A THR 42 1_555 K NA NA . A NA 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.101 ? 
metalc ? metalc2 A OG1 THR 39 A THR 42 1_555 K NA NA . A NA 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? 
metalc ? metalc3 A OD1 ASP 40 A ASP 43 1_555 K NA NA . A NA 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? 
metalc ? metalc4 A OE2 GLU 66 A GLU 69 1_555 K NA NA . A NA 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.861 ? 
metalc ? metalc5 A NE2 HIS 74 A HIS 77 1_555 I ZN ZN . A ZN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
metalc ? metalc6 A ND1 HIS 76 A HIS 79 1_555 I ZN ZN . A ZN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
metalc ? metalc7 A OD2 ASP 78 A ASP 81 1_555 J ZN ZN . A ZN 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
metalc ? metalc8 A NE2 HIS 136 A HIS 139 1_555 I ZN ZN . A ZN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? 
metalc ? metalc9 A SG CYS 155 A CYS 158 1_555 J ZN ZN . A ZN 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? 
metalc ? metalc10 A NE2 HIS 194 A HIS 197 1_555 J ZN ZN . A ZN 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? 
metalc ? metalc11 I ZN ZN . A ZN 407 1_555 U O HOH . A HOH 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
metalc ? metalc12 J ZN ZN . A ZN 408 1_555 U O HOH . A HOH 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
metalc ? metalc13 B NE2 HIS 74 B HIS 77 1_555 T ZN ZN . B ZN 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
metalc ? metalc14 B ND1 HIS 76 B HIS 79 1_555 T ZN ZN . B ZN 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? 
metalc ? metalc15 B OD2 ASP 78 B ASP 81 1_555 S ZN ZN . B ZN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
metalc ? metalc16 B NE2 HIS 136 B HIS 139 1_555 T ZN ZN . B ZN 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? 
metalc ? metalc17 B SG CYS 155 B CYS 158 1_555 S ZN ZN . B ZN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? 
metalc ? metalc18 B NE2 HIS 194 B HIS 197 1_555 S ZN ZN . B ZN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc19 S ZN ZN . B ZN 306 1_555 V O HOH . B HOH 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.862 ? 
metalc ? metalc20 T ZN ZN . B ZN 307 1_555 V O HOH . B HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? 
metalc ? metalc21 T ZN ZN . B ZN 307 1_555 V O HOH . B HOH 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 92 n n 
C1 C2 EDO sing 93 n n 
C1 H11 EDO sing 94 n n 
C1 H12 EDO sing 95 n n 
O1 HO1 EDO sing 96 n n 
C2 O2 EDO sing 97 n n 
C2 H21 EDO sing 98 n n 
C2 H22 EDO sing 99 n n 
O2 HO2 EDO sing 100 n n 
#
_atom_sites.entry_id                     6R78 
_atom_sites.fract_transf_matrix[1][1]    0.01645 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006871 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013676 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016878 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 401 401 GOL GOL . 
D 3 PEG A 1 402 501 PEG PEG . 
E 2 GOL A 1 403 601 GOL GOL . 
F 2 GOL A 1 404 1001 GOL GOL . 
G 2 GOL A 1 405 1101 GOL GOL . 
H 4 BME A 1 406 1201 BME BME . 
I 5 ZN A 1 407 3 ZN ZN . 
J 5 ZN A 1 408 4 ZN ZN . 
K 6 NA A 1 409 1 NA NA . 
L 7 EDO A 1 410 1 EDO EDO . 
M 2 GOL A 1 411 1 GOL GOL . 
N 2 GOL B 1 301 301 GOL GOL . 
O 2 GOL B 1 302 401 GOL GOL . 
P 2 GOL B 1 303 501 GOL GOL . 
Q 2 GOL B 1 304 701 GOL GOL . 
R 4 BME B 1 305 801 BME BME . 
S 5 ZN B 1 306 1 ZN ZN . 
T 5 ZN B 1 307 2 ZN ZN . 
U 8 HOH A 1 501 233 HOH HOH . 
U 8 HOH A 2 502 239 HOH HOH . 
U 8 HOH A 3 503 79 HOH HOH . 
U 8 HOH A 4 504 324 HOH HOH . 
U 8 HOH A 5 505 206 HOH HOH . 
U 8 HOH A 6 506 366 HOH HOH . 
U 8 HOH A 7 507 257 HOH HOH . 
U 8 HOH A 8 508 232 HOH HOH . 
U 8 HOH A 9 509 225 HOH HOH . 
U 8 HOH A 10 510 160 HOH HOH . 
U 8 HOH A 11 511 363 HOH HOH . 
U 8 HOH A 12 512 335 HOH HOH . 
U 8 HOH A 13 513 286 HOH HOH . 
U 8 HOH A 14 514 362 HOH HOH . 
U 8 HOH A 15 515 101 HOH HOH . 
U 8 HOH A 16 516 195 HOH HOH . 
U 8 HOH A 17 517 194 HOH HOH . 
U 8 HOH A 18 518 343 HOH HOH . 
U 8 HOH A 19 519 342 HOH HOH . 
U 8 HOH A 20 520 64 HOH HOH . 
U 8 HOH A 21 521 272 HOH HOH . 
U 8 HOH A 22 522 189 HOH HOH . 
U 8 HOH A 23 523 332 HOH HOH . 
U 8 HOH A 24 524 161 HOH HOH . 
U 8 HOH A 25 525 163 HOH HOH . 
U 8 HOH A 26 526 36 HOH HOH . 
U 8 HOH A 27 527 340 HOH HOH . 
U 8 HOH A 28 528 319 HOH HOH . 
U 8 HOH A 29 529 330 HOH HOH . 
U 8 HOH A 30 530 68 HOH HOH . 
U 8 HOH A 31 531 35 HOH HOH . 
U 8 HOH A 32 532 149 HOH HOH . 
U 8 HOH A 33 533 325 HOH HOH . 
U 8 HOH A 34 534 192 HOH HOH . 
U 8 HOH A 35 535 158 HOH HOH . 
U 8 HOH A 36 536 339 HOH HOH . 
U 8 HOH A 37 537 359 HOH HOH . 
U 8 HOH A 38 538 288 HOH HOH . 
U 8 HOH A 39 539 334 HOH HOH . 
U 8 HOH A 40 540 12 HOH HOH . 
U 8 HOH A 41 541 14 HOH HOH . 
U 8 HOH A 42 542 21 HOH HOH . 
U 8 HOH A 43 543 365 HOH HOH . 
U 8 HOH A 44 544 260 HOH HOH . 
U 8 HOH A 45 545 151 HOH HOH . 
U 8 HOH A 46 546 356 HOH HOH . 
U 8 HOH A 47 547 352 HOH HOH . 
U 8 HOH A 48 548 333 HOH HOH . 
U 8 HOH A 49 549 354 HOH HOH . 
U 8 HOH A 50 550 59 HOH HOH . 
U 8 HOH A 51 551 10 HOH HOH . 
U 8 HOH A 52 552 360 HOH HOH . 
U 8 HOH A 53 553 273 HOH HOH . 
U 8 HOH A 54 554 367 HOH HOH . 
U 8 HOH A 55 555 294 HOH HOH . 
U 8 HOH A 56 556 331 HOH HOH . 
U 8 HOH A 57 557 349 HOH HOH . 
U 8 HOH A 58 558 344 HOH HOH . 
U 8 HOH A 59 559 323 HOH HOH . 
U 8 HOH A 60 560 200 HOH HOH . 
U 8 HOH A 61 561 322 HOH HOH . 
U 8 HOH A 62 562 148 HOH HOH . 
U 8 HOH A 63 563 227 HOH HOH . 
U 8 HOH A 64 564 262 HOH HOH . 
U 8 HOH A 65 565 368 HOH HOH . 
U 8 HOH A 66 566 259 HOH HOH . 
U 8 HOH A 67 567 338 HOH HOH . 
U 8 HOH A 68 568 337 HOH HOH . 
U 8 HOH A 69 569 295 HOH HOH . 
U 8 HOH A 70 570 193 HOH HOH . 
U 8 HOH A 71 571 254 HOH HOH . 
U 8 HOH A 72 572 235 HOH HOH . 
U 8 HOH A 73 573 297 HOH HOH . 
U 8 HOH A 74 574 240 HOH HOH . 
U 8 HOH A 75 575 241 HOH HOH . 
V 8 HOH B 1 401 289 HOH HOH . 
V 8 HOH B 2 402 197 HOH HOH . 
V 8 HOH B 3 403 164 HOH HOH . 
V 8 HOH B 4 404 361 HOH HOH . 
V 8 HOH B 5 405 351 HOH HOH . 
V 8 HOH B 6 406 178 HOH HOH . 
V 8 HOH B 7 407 316 HOH HOH . 
V 8 HOH B 8 408 314 HOH HOH . 
V 8 HOH B 9 409 219 HOH HOH . 
V 8 HOH B 10 410 177 HOH HOH . 
V 8 HOH B 11 411 327 HOH HOH . 
V 8 HOH B 12 412 315 HOH HOH . 
V 8 HOH B 13 413 213 HOH HOH . 
V 8 HOH B 14 414 4 HOH HOH . 
V 8 HOH B 15 415 147 HOH HOH . 
V 8 HOH B 16 416 328 HOH HOH . 
V 8 HOH B 17 417 346 HOH HOH . 
V 8 HOH B 18 418 341 HOH HOH . 
V 8 HOH B 19 419 329 HOH HOH . 
V 8 HOH B 20 420 70 HOH HOH . 
V 8 HOH B 21 421 369 HOH HOH . 
V 8 HOH B 22 422 181 HOH HOH . 
V 8 HOH B 23 423 358 HOH HOH . 
V 8 HOH B 24 424 199 HOH HOH . 
V 8 HOH B 25 425 196 HOH HOH . 
V 8 HOH B 26 426 11 HOH HOH . 
V 8 HOH B 27 427 33 HOH HOH . 
V 8 HOH B 28 428 144 HOH HOH . 
V 8 HOH B 29 429 221 HOH HOH . 
V 8 HOH B 30 430 350 HOH HOH . 
V 8 HOH B 31 431 214 HOH HOH . 
V 8 HOH B 32 432 348 HOH HOH . 
V 8 HOH B 33 433 347 HOH HOH . 
V 8 HOH B 34 434 30 HOH HOH . 
V 8 HOH B 35 435 6 HOH HOH . 
V 8 HOH B 36 436 355 HOH HOH . 
V 8 HOH B 37 437 282 HOH HOH . 
V 8 HOH B 38 438 167 HOH HOH . 
V 8 HOH B 39 439 321 HOH HOH . 
V 8 HOH B 40 440 271 HOH HOH . 
V 8 HOH B 41 441 269 HOH HOH . 
V 8 HOH B 42 442 18 HOH HOH . 
V 8 HOH B 43 443 357 HOH HOH . 
V 8 HOH B 44 444 220 HOH HOH . 
V 8 HOH B 45 445 353 HOH HOH . 
V 8 HOH B 46 446 170 HOH HOH . 
V 8 HOH B 47 447 292 HOH HOH . 
V 8 HOH B 48 448 49 HOH HOH . 
V 8 HOH B 49 449 280 HOH HOH . 
V 8 HOH B 50 450 345 HOH HOH . 
V 8 HOH B 51 451 364 HOH HOH . 
V 8 HOH B 52 452 198 HOH HOH . 
V 8 HOH B 53 453 270 HOH HOH . 
V 8 HOH B 54 454 202 HOH HOH . 
V 8 HOH B 55 455 281 HOH HOH . 
V 8 HOH B 56 456 336 HOH HOH . 
V 8 HOH B 57 457 326 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . L 7 5.698 -9.839 37.068 1 76.67 ? C1 EDO 410 A 1 
HETATM 2 O O1 EDO . . . L 7 4.806 -8.846 37.557 1 73.34 ? O1 EDO 410 A 1 
HETATM 3 C C2 EDO . . . L 7 5.058 -10.857 36.177 1 88.42 ? C2 EDO 410 A 1 
HETATM 4 O O2 EDO . . . L 7 5.83 -11.237 35.032 1 83.74 ? O2 EDO 410 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#