data_6R7R # _model_server_result.job_id 4LvSORyWOiFMUwOzz2kXpw _model_server_result.datetime_utc '2024-11-15 12:10:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6r7r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":509}' # _entry.id 6R7R # _exptl.entry_id 6R7R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 482.562 _entity.id 6 _entity.src_method man _entity.type non-polymer _entity.pdbx_description DECYL-BETA-D-MALTOPYRANOSIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6R7R _cell.length_a 116.55 _cell.length_b 116.55 _cell.length_c 314.77 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6R7R _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O TYR 91 A TYR 91 1_555 F NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc2 A OG1 THR 94 A THR 94 1_555 F NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc3 A OG SER 95 A SER 95 1_555 F NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.199 ? metalc ? metalc4 A O GLY 309 A GLY 309 1_555 D NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc5 A O THR 311 A THR 311 1_555 E NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc6 A O ASN 313 A ASN 313 1_555 D NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc7 A OD1 ASN 313 A ASN 313 1_555 F NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc8 A OD1 ASP 315 A ASP 315 1_555 F NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? metalc ? metalc9 A O SER 352 A SER 352 1_555 E NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc10 A O ILE 353 A ILE 353 1_555 E NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? metalc ? metalc11 A O THR 355 A THR 355 1_555 E NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc12 A O ASN 405 A ASN 405 1_555 D NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc13 A OD2 ASP 409 A ASP 409 1_555 D NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? metalc ? metalc14 B O TYR 91 B TYR 91 1_555 P NA NA . B NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc15 B OG1 THR 94 B THR 94 1_555 P NA NA . B NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc16 B OG SER 95 B SER 95 1_555 P NA NA . B NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc17 B O GLY 309 B GLY 309 1_555 O NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc18 B O THR 311 B THR 311 1_555 N NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc19 B O ASN 313 B ASN 313 1_555 O NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc20 B OD1 ASN 313 B ASN 313 1_555 P NA NA . B NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc21 B OD1 ASP 315 B ASP 315 1_555 P NA NA . B NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.757 ? metalc ? metalc22 B O SER 352 B SER 352 1_555 N NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc23 B O ILE 353 B ILE 353 1_555 N NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc24 B O THR 355 B THR 355 1_555 N NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc25 B O ASN 405 B ASN 405 1_555 O NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? metalc ? metalc26 B OD2 ASP 409 B ASP 409 1_555 O NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.986 ? metalc ? metalc27 C O TYR 91 C TYR 91 1_555 CA NA NA . C NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc28 C OG1 THR 94 C THR 94 1_555 CA NA NA . C NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.046 ? metalc ? metalc29 C OG SER 95 C SER 95 1_555 CA NA NA . C NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc30 C O GLY 309 C GLY 309 1_555 AA NA NA . C NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? metalc ? metalc31 C O THR 311 C THR 311 1_555 BA NA NA . C NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc32 C O ASN 313 C ASN 313 1_555 AA NA NA . C NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc33 C OD1 ASN 313 C ASN 313 1_555 CA NA NA . C NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc34 C OD1 ASP 315 C ASP 315 1_555 CA NA NA . C NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc35 C O SER 352 C SER 352 1_555 BA NA NA . C NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc36 C O ILE 353 C ILE 353 1_555 BA NA NA . C NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? metalc ? metalc37 C O THR 355 C THR 355 1_555 BA NA NA . C NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc38 C O ASN 405 C ASN 405 1_555 AA NA NA . C NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? metalc ? metalc39 C OD1 ASP 409 C ASP 409 1_555 AA NA NA . C NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.083 ? metalc ? metalc40 C OD2 ASP 409 C ASP 409 1_555 AA NA NA . C NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? # _chem_comp.formula 'C22 H42 O11' _chem_comp.formula_weight 482.562 _chem_comp.id DMU _chem_comp.mon_nstd_flag . _chem_comp.name DECYL-BETA-D-MALTOPYRANOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms DECYLMALTOSIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C40 C37 DMU sing 122 n n C40 C43 DMU sing 123 n n C37 C34 DMU sing 124 n n C34 C31 DMU sing 125 n n C31 C28 DMU sing 126 n n C28 C25 DMU sing 127 n n C22 C25 DMU sing 128 n n C22 C19 DMU sing 129 n n O61 C57 DMU sing 130 n n O4 C7 DMU sing 131 n n C18 C19 DMU sing 132 n n C18 O16 DMU sing 133 n n O5 C6 DMU sing 134 n n O5 C4 DMU sing 135 n n C57 C4 DMU sing 136 n n C6 O16 DMU sing 137 n n C6 C1 DMU sing 138 n n C7 C5 DMU sing 139 n n C7 C8 DMU sing 140 n n C4 C3 DMU sing 141 n n O1 C10 DMU sing 142 n n O1 C9 DMU sing 143 n n C10 C5 DMU sing 144 n n C10 O7 DMU sing 145 n n C5 O3 DMU sing 146 n n O49 C1 DMU sing 147 n n C8 C9 DMU sing 148 n n C8 O2 DMU sing 149 n n C1 C2 DMU sing 150 n n C11 C9 DMU sing 151 n n C11 O6 DMU sing 152 n n C3 O7 DMU sing 153 n n C3 C2 DMU sing 154 n n C2 O55 DMU sing 155 n n C1 H1 DMU sing 156 n n C2 H2 DMU sing 157 n n C3 H3 DMU sing 158 n n C4 H4 DMU sing 159 n n C6 H5 DMU sing 160 n n C18 H6 DMU sing 161 n n C18 H7 DMU sing 162 n n C19 H8 DMU sing 163 n n C19 H9 DMU sing 164 n n C22 H10 DMU sing 165 n n C22 H11 DMU sing 166 n n C25 H12 DMU sing 167 n n C25 H13 DMU sing 168 n n C28 H14 DMU sing 169 n n C28 H15 DMU sing 170 n n C31 H16 DMU sing 171 n n C31 H17 DMU sing 172 n n C34 H18 DMU sing 173 n n C34 H19 DMU sing 174 n n C37 H20 DMU sing 175 n n C37 H21 DMU sing 176 n n C40 H22 DMU sing 177 n n C40 H23 DMU sing 178 n n C43 H24 DMU sing 179 n n C43 H25 DMU sing 180 n n C43 H26 DMU sing 181 n n O49 H27 DMU sing 182 n n O55 H28 DMU sing 183 n n C57 H29 DMU sing 184 n n C57 H30 DMU sing 185 n n O61 H31 DMU sing 186 n n C5 H32 DMU sing 187 n n C7 H33 DMU sing 188 n n C8 H34 DMU sing 189 n n C9 H35 DMU sing 190 n n C10 H36 DMU sing 191 n n O2 H37 DMU sing 192 n n O3 H38 DMU sing 193 n n O4 H39 DMU sing 194 n n C11 H40 DMU sing 195 n n C11 H41 DMU sing 196 n n O6 H42 DMU sing 197 n n # _atom_sites.entry_id 6R7R _atom_sites.fract_transf_matrix[1][1] 0.00858 _atom_sites.fract_transf_matrix[1][2] 0.004954 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009907 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003177 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 NA A 1 501 501 NA NA . E 2 NA A 1 502 502 NA NA . F 2 NA A 1 503 503 NA NA . G 3 DAS A 1 504 504 DAS DAS . H 4 PEG A 1 505 505 PEG PEG . I 4 PEG A 1 506 506 PEG PEG . J 4 PEG A 1 507 507 PEG PEG . K 5 PG4 A 1 508 508 PG4 PG4 . L 6 DMU A 1 509 509 DMU DMU . M 7 PGE A 1 510 510 PGE PGE . N 2 NA B 1 501 501 NA NA . O 2 NA B 1 502 502 NA NA . P 2 NA B 1 503 503 NA NA . Q 3 DAS B 1 504 504 DAS DAS . R 4 PEG B 1 505 505 PEG PEG . S 4 PEG B 1 506 506 PEG PEG . T 4 PEG B 1 507 507 PEG PEG . U 4 PEG B 1 508 508 PEG PEG . V 8 P6G B 1 509 509 P6G P6G . W 8 P6G B 1 510 510 P6G P6G . X 7 PGE B 1 511 511 PGE PGE . Y 7 PGE B 1 512 512 PGE PGE . Z 9 1PE B 1 513 513 1PE 1PE . AA 2 NA C 1 501 501 NA NA . BA 2 NA C 1 502 502 NA NA . CA 2 NA C 1 503 503 NA NA . DA 3 DAS C 1 504 504 DAS DAS . EA 4 PEG C 1 505 505 PEG PEG . FA 4 PEG C 1 506 506 PEG PEG . GA 4 PEG C 1 507 507 PEG PEG . HA 4 PEG C 1 508 508 PEG PEG . IA 4 PEG C 1 509 509 PEG PEG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DMU . . . L 6 76.365 44.656 360.511 1 190.22 ? C1 DMU 509 A 1 HETATM 2 C C2 DMU . . . L 6 77.287 43.499 360.464 1 186.43 ? C2 DMU 509 A 1 HETATM 3 C C3 DMU . . . L 6 78.239 43.542 361.611 1 185.82 ? C3 DMU 509 A 1 HETATM 4 C C4 DMU . . . L 6 77.459 43.51 362.923 1 186.25 ? C4 DMU 509 A 1 HETATM 5 O O5 DMU . . . L 6 75.98 43.756 362.838 1 190.82 ? O5 DMU 509 A 1 HETATM 6 C C6 DMU . . . L 6 75.424 44.517 361.683 1 192.89 ? C6 DMU 509 A 1 HETATM 7 O O7 DMU . . . L 6 79.131 42.376 361.717 1 185.19 ? O7 DMU 509 A 1 HETATM 8 O O16 DMU . . . L 6 75.043 45.799 362.072 1 192.99 ? O16 DMU 509 A 1 HETATM 9 C C18 DMU . . . L 6 74.226 45.806 363.237 1 189.45 ? C18 DMU 509 A 1 HETATM 10 C C19 DMU . . . L 6 75.036 46.191 364.503 1 181.41 ? C19 DMU 509 A 1 HETATM 11 C C22 DMU . . . L 6 74.494 45.41 365.709 1 168.59 ? C22 DMU 509 A 1 HETATM 12 C C25 DMU . . . L 6 72.92 45.427 365.665 1 161.57 ? C25 DMU 509 A 1 HETATM 13 C C28 DMU . . . L 6 72.411 46.904 365.849 1 162.25 ? C28 DMU 509 A 1 HETATM 14 C C31 DMU . . . L 6 71.403 47.338 364.718 1 152.08 ? C31 DMU 509 A 1 HETATM 15 C C34 DMU . . . L 6 70.18 48.053 365.406 1 144.47 ? C34 DMU 509 A 1 HETATM 16 C C37 DMU . . . L 6 69.776 47.163 366.625 1 144.35 ? C37 DMU 509 A 1 HETATM 17 C C40 DMU . . . L 6 68.423 47.566 367.264 1 134.39 ? C40 DMU 509 A 1 HETATM 18 C C43 DMU . . . L 6 67.953 46.458 368.215 1 123.13 ? C43 DMU 509 A 1 HETATM 19 O O49 DMU . . . L 6 75.575 44.685 359.3 1 193.04 ? O49 DMU 509 A 1 HETATM 20 O O55 DMU . . . L 6 77.967 43.575 359.181 1 185.68 ? O55 DMU 509 A 1 HETATM 21 C C57 DMU . . . L 6 78.087 44.443 363.942 1 185.83 ? C57 DMU 509 A 1 HETATM 22 O O61 DMU . . . L 6 79.228 43.833 364.475 1 182.38 ? O61 DMU 509 A 1 HETATM 23 C C5 DMU . . . L 6 81.534 42.831 361.358 1 184.93 ? C5 DMU 509 A 1 HETATM 24 C C7 DMU . . . L 6 82.514 43.056 360.283 1 177.38 ? C7 DMU 509 A 1 HETATM 25 C C8 DMU . . . L 6 82.362 42.113 359.151 1 177.47 ? C8 DMU 509 A 1 HETATM 26 C C9 DMU . . . L 6 80.986 42.302 358.408 1 176.94 ? C9 DMU 509 A 1 HETATM 27 O O1 DMU . . . L 6 79.913 42.68 359.459 1 186.7 ? O1 DMU 509 A 1 HETATM 28 C C10 DMU . . . L 6 80.228 42.252 360.833 1 185.98 ? C10 DMU 509 A 1 HETATM 29 O O2 DMU . . . L 6 83.463 42.306 358.26 1 176.92 ? O2 DMU 509 A 1 HETATM 30 O O3 DMU . . . L 6 81.315 44.108 362.059 1 189.92 ? O3 DMU 509 A 1 HETATM 31 O O4 DMU . . . L 6 83.899 42.915 360.792 1 168.44 ? O4 DMU 509 A 1 HETATM 32 C C11 DMU . . . L 6 80.584 41.131 357.745 1 158.87 ? C11 DMU 509 A 1 HETATM 33 O O6 DMU . . . L 6 79.219 41.223 357.419 1 144.04 ? O6 DMU 509 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 33 #