data_6R8L # _model_server_result.job_id 8KV6UsOx33wlNV0uavH9fQ _model_server_result.datetime_utc '2024-11-08 10:09:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6r8l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6R8L # _exptl.entry_id 6R8L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 496.622 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[2-[(2~{R})-2-(2-methylsulfanylphenyl)pyrrolidin-1-yl]-2-oxidanylidene-ethyl]-3-[[(1~{S},9~{S},10~{S})-10-oxidanyl-12-oxa-8-azatricyclo[7.3.1.0^{2,7}]trideca-2(7),3,5-trien-4-yl]methyl]urea _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6R8L _cell.length_a 57.151 _cell.length_b 57.151 _cell.length_c 115.386 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6R8L _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H32 N4 O4 S' _chem_comp.formula_weight 496.622 _chem_comp.id JUZ _chem_comp.mon_nstd_flag . _chem_comp.name 1-[2-[(2~{R})-2-(2-methylsulfanylphenyl)pyrrolidin-1-yl]-2-oxidanylidene-ethyl]-3-[[(1~{S},9~{S},10~{S})-10-oxidanyl-12-oxa-8-azatricyclo[7.3.1.0^{2,7}]trideca-2(7),3,5-trien-4-yl]methyl]urea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C20 S19 JUZ sing 173 n n S19 C14 JUZ sing 174 n n O4 C3 JUZ doub 175 n n C34 N5 JUZ sing 176 n n C34 C21 JUZ sing 177 n n C14 C15 JUZ doub 178 n y C14 C13 JUZ sing 179 n y C3 N5 JUZ sing 180 n n C3 N2 JUZ sing 181 n n C15 C16 JUZ sing 182 n y C12 C9 JUZ sing 183 n n C12 C11 JUZ sing 184 n n C9 C13 JUZ sing 185 n n C9 N7 JUZ sing 186 n n C1 N2 JUZ sing 187 n n C1 C6 JUZ sing 188 n n C13 C18 JUZ doub 189 n y C21 C26 JUZ doub 190 n y C21 C22 JUZ sing 191 n y C26 C25 JUZ sing 192 n y N7 C6 JUZ sing 193 n n N7 C10 JUZ sing 194 n n C16 C17 JUZ doub 195 n y O31 C35 JUZ sing 196 n n O31 C30 JUZ sing 197 n n C6 O8 JUZ doub 198 n n C22 C23 JUZ doub 199 n y C11 C10 JUZ sing 200 n n C35 C32 JUZ sing 201 n n C25 C30 JUZ sing 202 n n C25 C24 JUZ doub 203 n y C18 C17 JUZ sing 204 n y C30 C29 JUZ sing 205 n n C23 C24 JUZ sing 206 n y C24 N27 JUZ sing 207 n n C32 O33 JUZ sing 208 n n C32 C28 JUZ sing 209 n n C29 C28 JUZ sing 210 n n N27 C28 JUZ sing 211 n n C1 H1 JUZ sing 212 n n C1 H2 JUZ sing 213 n n C9 H3 JUZ sing 214 n n C10 H4 JUZ sing 215 n n C10 H5 JUZ sing 216 n n C11 H6 JUZ sing 217 n n C11 H7 JUZ sing 218 n n C12 H8 JUZ sing 219 n n C12 H9 JUZ sing 220 n n C15 H10 JUZ sing 221 n n C16 H11 JUZ sing 222 n n C20 H12 JUZ sing 223 n n C20 H13 JUZ sing 224 n n C20 H14 JUZ sing 225 n n C22 H15 JUZ sing 226 n n C30 H16 JUZ sing 227 n n C32 H17 JUZ sing 228 n n C34 H18 JUZ sing 229 n n C34 H19 JUZ sing 230 n n C35 H20 JUZ sing 231 n n C35 H21 JUZ sing 232 n n N2 H22 JUZ sing 233 n n N5 H23 JUZ sing 234 n n C17 H24 JUZ sing 235 n n C18 H25 JUZ sing 236 n n C23 H26 JUZ sing 237 n n C26 H27 JUZ sing 238 n n N27 H28 JUZ sing 239 n n C28 H29 JUZ sing 240 n n C29 H30 JUZ sing 241 n n C29 H31 JUZ sing 242 n n O33 H32 JUZ sing 243 n n # _atom_sites.entry_id 6R8L _atom_sites.fract_transf_matrix[1][1] 0.017498 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017498 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008667 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JUZ A 1 301 1 JUZ INH . C 3 HOH A 1 401 127 HOH HOH . C 3 HOH A 2 402 28 HOH HOH . C 3 HOH A 3 403 63 HOH HOH . C 3 HOH A 4 404 32 HOH HOH . C 3 HOH A 5 405 73 HOH HOH . C 3 HOH A 6 406 91 HOH HOH . C 3 HOH A 7 407 93 HOH HOH . C 3 HOH A 8 408 101 HOH HOH . C 3 HOH A 9 409 8 HOH HOH . C 3 HOH A 10 410 54 HOH HOH . C 3 HOH A 11 411 20 HOH HOH . C 3 HOH A 12 412 50 HOH HOH . C 3 HOH A 13 413 86 HOH HOH . C 3 HOH A 14 414 103 HOH HOH . C 3 HOH A 15 415 83 HOH HOH . C 3 HOH A 16 416 47 HOH HOH . C 3 HOH A 17 417 62 HOH HOH . C 3 HOH A 18 418 41 HOH HOH . C 3 HOH A 19 419 44 HOH HOH . C 3 HOH A 20 420 2 HOH HOH . C 3 HOH A 21 421 37 HOH HOH . C 3 HOH A 22 422 78 HOH HOH . C 3 HOH A 23 423 51 HOH HOH . C 3 HOH A 24 424 9 HOH HOH . C 3 HOH A 25 425 38 HOH HOH . C 3 HOH A 26 426 82 HOH HOH . C 3 HOH A 27 427 4 HOH HOH . C 3 HOH A 28 428 3 HOH HOH . C 3 HOH A 29 429 45 HOH HOH . C 3 HOH A 30 430 42 HOH HOH . C 3 HOH A 31 431 64 HOH HOH . C 3 HOH A 32 432 11 HOH HOH . C 3 HOH A 33 433 5 HOH HOH . C 3 HOH A 34 434 40 HOH HOH . C 3 HOH A 35 435 66 HOH HOH . C 3 HOH A 36 436 80 HOH HOH . C 3 HOH A 37 437 43 HOH HOH . C 3 HOH A 38 438 111 HOH HOH . C 3 HOH A 39 439 67 HOH HOH . C 3 HOH A 40 440 13 HOH HOH . C 3 HOH A 41 441 18 HOH HOH . C 3 HOH A 42 442 148 HOH HOH . C 3 HOH A 43 443 30 HOH HOH . C 3 HOH A 44 444 151 HOH HOH . C 3 HOH A 45 445 52 HOH HOH . C 3 HOH A 46 446 97 HOH HOH . C 3 HOH A 47 447 68 HOH HOH . C 3 HOH A 48 448 113 HOH HOH . C 3 HOH A 49 449 57 HOH HOH . C 3 HOH A 50 450 48 HOH HOH . C 3 HOH A 51 451 29 HOH HOH . C 3 HOH A 52 452 1 HOH HOH . C 3 HOH A 53 453 120 HOH HOH . C 3 HOH A 54 454 81 HOH HOH . C 3 HOH A 55 455 158 HOH HOH . C 3 HOH A 56 456 76 HOH HOH . C 3 HOH A 57 457 46 HOH HOH . C 3 HOH A 58 458 71 HOH HOH . C 3 HOH A 59 459 165 HOH HOH . C 3 HOH A 60 460 49 HOH HOH . C 3 HOH A 61 461 149 HOH HOH . C 3 HOH A 62 462 98 HOH HOH . C 3 HOH A 63 463 99 HOH HOH . C 3 HOH A 64 464 7 HOH HOH . C 3 HOH A 65 465 117 HOH HOH . C 3 HOH A 66 466 138 HOH HOH . C 3 HOH A 67 467 137 HOH HOH . C 3 HOH A 68 468 162 HOH HOH . C 3 HOH A 69 469 12 HOH HOH . C 3 HOH A 70 470 21 HOH HOH . C 3 HOH A 71 471 24 HOH HOH . C 3 HOH A 72 472 122 HOH HOH . C 3 HOH A 73 473 56 HOH HOH . C 3 HOH A 74 474 108 HOH HOH . C 3 HOH A 75 475 110 HOH HOH . C 3 HOH A 76 476 102 HOH HOH . C 3 HOH A 77 477 19 HOH HOH . C 3 HOH A 78 478 77 HOH HOH . C 3 HOH A 79 479 65 HOH HOH . C 3 HOH A 80 480 53 HOH HOH . C 3 HOH A 81 481 33 HOH HOH . C 3 HOH A 82 482 92 HOH HOH . C 3 HOH A 83 483 25 HOH HOH . C 3 HOH A 84 484 15 HOH HOH . C 3 HOH A 85 485 100 HOH HOH . C 3 HOH A 86 486 88 HOH HOH . C 3 HOH A 87 487 69 HOH HOH . C 3 HOH A 88 488 6 HOH HOH . C 3 HOH A 89 489 147 HOH HOH . C 3 HOH A 90 490 90 HOH HOH . C 3 HOH A 91 491 84 HOH HOH . C 3 HOH A 92 492 16 HOH HOH . C 3 HOH A 93 493 34 HOH HOH . C 3 HOH A 94 494 39 HOH HOH . C 3 HOH A 95 495 36 HOH HOH . C 3 HOH A 96 496 160 HOH HOH . C 3 HOH A 97 497 22 HOH HOH . C 3 HOH A 98 498 118 HOH HOH . C 3 HOH A 99 499 23 HOH HOH . C 3 HOH A 100 500 85 HOH HOH . C 3 HOH A 101 501 123 HOH HOH . C 3 HOH A 102 502 27 HOH HOH . C 3 HOH A 103 503 89 HOH HOH . C 3 HOH A 104 504 26 HOH HOH . C 3 HOH A 105 505 72 HOH HOH . C 3 HOH A 106 506 141 HOH HOH . C 3 HOH A 107 507 155 HOH HOH . C 3 HOH A 108 508 14 HOH HOH . C 3 HOH A 109 509 60 HOH HOH . C 3 HOH A 110 510 75 HOH HOH . C 3 HOH A 111 511 17 HOH HOH . C 3 HOH A 112 512 131 HOH HOH . C 3 HOH A 113 513 156 HOH HOH . C 3 HOH A 114 514 104 HOH HOH . C 3 HOH A 115 515 125 HOH HOH . C 3 HOH A 116 516 74 HOH HOH . C 3 HOH A 117 517 10 HOH HOH . C 3 HOH A 118 518 143 HOH HOH . C 3 HOH A 119 519 31 HOH HOH . C 3 HOH A 120 520 35 HOH HOH . C 3 HOH A 121 521 107 HOH HOH . C 3 HOH A 122 522 79 HOH HOH . C 3 HOH A 123 523 70 HOH HOH . C 3 HOH A 124 524 119 HOH HOH . C 3 HOH A 125 525 136 HOH HOH . C 3 HOH A 126 526 87 HOH HOH . C 3 HOH A 127 527 152 HOH HOH . C 3 HOH A 128 528 146 HOH HOH . C 3 HOH A 129 529 133 HOH HOH . C 3 HOH A 130 530 114 HOH HOH . C 3 HOH A 131 531 129 HOH HOH . C 3 HOH A 132 532 128 HOH HOH . C 3 HOH A 133 533 94 HOH HOH . C 3 HOH A 134 534 150 HOH HOH . C 3 HOH A 135 535 135 HOH HOH . C 3 HOH A 136 536 115 HOH HOH . C 3 HOH A 137 537 153 HOH HOH . C 3 HOH A 138 538 105 HOH HOH . C 3 HOH A 139 539 121 HOH HOH . C 3 HOH A 140 540 159 HOH HOH . C 3 HOH A 141 541 58 HOH HOH . C 3 HOH A 142 542 161 HOH HOH . C 3 HOH A 143 543 116 HOH HOH . C 3 HOH A 144 544 142 HOH HOH . C 3 HOH A 145 545 55 HOH HOH . C 3 HOH A 146 546 112 HOH HOH . C 3 HOH A 147 547 109 HOH HOH . C 3 HOH A 148 548 145 HOH HOH . C 3 HOH A 149 549 144 HOH HOH . C 3 HOH A 150 550 157 HOH HOH . C 3 HOH A 151 551 95 HOH HOH . C 3 HOH A 152 552 96 HOH HOH . C 3 HOH A 153 553 59 HOH HOH . C 3 HOH A 154 554 166 HOH HOH . C 3 HOH A 155 555 130 HOH HOH . C 3 HOH A 156 556 61 HOH HOH . C 3 HOH A 157 557 106 HOH HOH . C 3 HOH A 158 558 154 HOH HOH . C 3 HOH A 159 559 164 HOH HOH . C 3 HOH A 160 560 124 HOH HOH . C 3 HOH A 161 561 140 HOH HOH . C 3 HOH A 162 562 163 HOH HOH . C 3 HOH A 163 563 132 HOH HOH . C 3 HOH A 164 564 139 HOH HOH . C 3 HOH A 165 565 126 HOH HOH . C 3 HOH A 166 566 134 HOH HOH . C 3 HOH A 167 567 167 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 JUZ . . . B 2 -1.504 -0.618 -25.19 1 21.5 ? C1 JUZ 301 A 1 HETATM 2 C C3 JUZ . . . B 2 -3.426 0.767 -25.779 1 20.51 ? C3 JUZ 301 A 1 HETATM 3 O O4 JUZ . . . B 2 -3.717 0.036 -26.692 1 19.42 ? O4 JUZ 301 A 1 HETATM 4 C C9 JUZ . . . B 2 -0.861 -3.47 -25.506 1 22.1 ? C9 JUZ 301 A 1 HETATM 5 C C10 JUZ . . . B 2 -2.321 -4.062 -23.705 1 19.87 ? C10 JUZ 301 A 1 HETATM 6 C C11 JUZ . . . B 2 -1.525 -5.301 -24.152 1 19.57 ? C11 JUZ 301 A 1 HETATM 7 C C12 JUZ . . . B 2 -1.192 -4.948 -25.609 1 21.03 ? C12 JUZ 301 A 1 HETATM 8 C C13 JUZ . . . B 2 0.587 -3.304 -25.129 1 24.36 ? C13 JUZ 301 A 1 HETATM 9 C C14 JUZ . . . B 2 1.589 -3.456 -26.073 1 30.71 ? C14 JUZ 301 A 1 HETATM 10 C C15 JUZ . . . B 2 2.927 -3.304 -25.733 1 31.37 ? C15 JUZ 301 A 1 HETATM 11 C C16 JUZ . . . B 2 3.266 -3.003 -24.444 1 30.69 ? C16 JUZ 301 A 1 HETATM 12 C C20 JUZ . . . B 2 0.323 -2.37 -28.317 1 29.11 ? C20 JUZ 301 A 1 HETATM 13 C C21 JUZ . . . B 2 -6.382 2.608 -25.038 1 23.02 ? C21 JUZ 301 A 1 HETATM 14 C C22 JUZ . . . B 2 -6.903 1.607 -24.254 1 20.7 ? C22 JUZ 301 A 1 HETATM 15 C C24 JUZ . . . B 2 -8.243 3.201 -23.09 1 19.82 ? C24 JUZ 301 A 1 HETATM 16 C C30 JUZ . . . B 2 -8.181 5.639 -23.644 1 24.96 ? C30 JUZ 301 A 1 HETATM 17 C C32 JUZ . . . B 2 -10.832 5.264 -22.513 1 26.53 ? C32 JUZ 301 A 1 HETATM 18 C C34 JUZ . . . B 2 -5.361 2.265 -26.104 1 24.34 ? C34 JUZ 301 A 1 HETATM 19 C C35 JUZ . . . B 2 -10.538 5.184 -23.997 1 26.05 ? C35 JUZ 301 A 1 HETATM 20 N N2 JUZ . . . B 2 -2.346 0.542 -25.026 1 21.1 ? N2 JUZ 301 A 1 HETATM 21 N N5 JUZ . . . B 2 -4.134 1.854 -25.459 1 21.58 ? N5 JUZ 301 A 1 HETATM 22 C C6 JUZ . . . B 2 -2.117 -1.676 -24.305 1 21.48 ? C6 JUZ 301 A 1 HETATM 23 N N7 JUZ . . . B 2 -1.785 -2.953 -24.49 1 21.98 ? N7 JUZ 301 A 1 HETATM 24 O O8 JUZ . . . B 2 -2.899 -1.389 -23.441 1 20.52 ? O8 JUZ 301 A 1 HETATM 25 C C17 JUZ . . . B 2 2.273 -2.853 -23.511 1 28.22 ? C17 JUZ 301 A 1 HETATM 26 C C18 JUZ . . . B 2 0.95 -3.018 -23.85 1 24.05 ? C18 JUZ 301 A 1 HETATM 27 S S19 JUZ . . . B 2 1.163 -3.836 -27.717 1 31.71 ? S19 JUZ 301 A 1 HETATM 28 C C23 JUZ . . . B 2 -7.82 1.905 -23.283 1 18.41 ? C23 JUZ 301 A 1 HETATM 29 C C25 JUZ . . . B 2 -7.738 4.207 -23.879 1 21.74 ? C25 JUZ 301 A 1 HETATM 30 C C26 JUZ . . . B 2 -6.801 3.897 -24.84 1 22.13 ? C26 JUZ 301 A 1 HETATM 31 N N27 JUZ . . . B 2 -9.196 3.472 -22.109 1 19.65 ? N27 JUZ 301 A 1 HETATM 32 C C28 JUZ . . . B 2 -9.586 4.833 -21.755 1 24.04 ? C28 JUZ 301 A 1 HETATM 33 C C29 JUZ . . . B 2 -8.447 5.787 -22.143 1 24.52 ? C29 JUZ 301 A 1 HETATM 34 O O31 JUZ . . . B 2 -9.392 5.963 -24.338 1 27.88 ? O31 JUZ 301 A 1 HETATM 35 O O33 JUZ . . . B 2 -11.932 4.42 -22.222 1 24.26 ? O33 JUZ 301 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #