data_6R8O # _model_server_result.job_id Tb5VHsbZJpZxrb73O2nKdQ _model_server_result.datetime_utc '2024-11-08 09:34:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6r8o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 6R8O # _exptl.entry_id 6R8O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 496.622 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(((2R,3S,6R)-3-hydroxy-2,3,4,6-tetrahydro-1H-2,6-methanobenzo[c][1,5]oxazocin-8-yl)methyl)-3-(2-((R)-2-(2-(methylthio)phenyl)pyrrolidin-1-yl)-2-oxoethyl)urea _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6R8O _cell.length_a 57.057 _cell.length_b 57.057 _cell.length_c 112.81 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6R8O _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H32 N4 O4 S' _chem_comp.formula_weight 496.622 _chem_comp.id JV2 _chem_comp.mon_nstd_flag . _chem_comp.name 1-(((2R,3S,6R)-3-hydroxy-2,3,4,6-tetrahydro-1H-2,6-methanobenzo[c][1,5]oxazocin-8-yl)methyl)-3-(2-((R)-2-(2-(methylthio)phenyl)pyrrolidin-1-yl)-2-oxoethyl)urea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 S2 JV2 sing 173 n n S2 C3 JV2 sing 174 n n O19 C18 JV2 doub 175 n n C3 C4 JV2 doub 176 n y C3 C8 JV2 sing 177 n y C21 N20 JV2 sing 178 n n C21 C22 JV2 sing 179 n n C18 N20 JV2 sing 180 n n C18 N17 JV2 sing 181 n n C4 C5 JV2 sing 182 n y C10 C9 JV2 sing 183 n n C10 C11 JV2 sing 184 n n C9 C8 JV2 sing 185 n n C9 N13 JV2 sing 186 n n C16 N17 JV2 sing 187 n n C16 C14 JV2 sing 188 n n C23 C22 JV2 doub 189 n y C23 C24 JV2 sing 190 n y C8 C7 JV2 doub 191 n y C22 C31 JV2 sing 192 n y N13 C14 JV2 sing 193 n n N13 C12 JV2 sing 194 n n C25 C24 JV2 sing 195 n n C25 C26 JV2 sing 196 n n C25 O36 JV2 sing 197 n n C5 C6 JV2 doub 198 n y C14 O15 JV2 doub 199 n n C24 C29 JV2 doub 200 n y C11 C12 JV2 sing 201 n n C31 C30 JV2 doub 202 n y C26 C27 JV2 sing 203 n n C7 C6 JV2 sing 204 n y O36 C35 JV2 sing 205 n n C29 C30 JV2 sing 206 n y C29 N28 JV2 sing 207 n n C27 N28 JV2 sing 208 n n C27 C32 JV2 sing 209 n n C35 C32 JV2 sing 210 n n C32 O34 JV2 sing 211 n n C1 H1 JV2 sing 212 n n C1 H2 JV2 sing 213 n n C1 H3 JV2 sing 214 n n C4 H4 JV2 sing 215 n n C5 H5 JV2 sing 216 n n C6 H6 JV2 sing 217 n n C7 H7 JV2 sing 218 n n C11 H8 JV2 sing 219 n n C11 H9 JV2 sing 220 n n C12 H10 JV2 sing 221 n n C12 H11 JV2 sing 222 n n C16 H12 JV2 sing 223 n n C16 H13 JV2 sing 224 n n C21 H14 JV2 sing 225 n n C21 H15 JV2 sing 226 n n C23 H16 JV2 sing 227 n n C27 H17 JV2 sing 228 n n C30 H18 JV2 sing 229 n n C31 H19 JV2 sing 230 n n C32 H20 JV2 sing 231 n n C35 H21 JV2 sing 232 n n C35 H22 JV2 sing 233 n n C9 H23 JV2 sing 234 n n C10 H24 JV2 sing 235 n n C10 H25 JV2 sing 236 n n N17 H26 JV2 sing 237 n n N20 H27 JV2 sing 238 n n C25 H28 JV2 sing 239 n n C26 H29 JV2 sing 240 n n C26 H30 JV2 sing 241 n n N28 H31 JV2 sing 242 n n O34 H32 JV2 sing 243 n n # _atom_sites.entry_id 6R8O _atom_sites.fract_transf_matrix[1][1] 0.017526 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017526 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008864 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PG4 A 1 301 2 PG4 PG4 . C 3 SO4 A 1 302 4 SO4 SO4 . D 4 PO4 A 1 303 5 PO4 PO4 . E 5 JV2 A 1 304 1 JV2 INX . F 6 HOH A 1 401 131 HOH HOH . F 6 HOH A 2 402 46 HOH HOH . F 6 HOH A 3 403 4 HOH HOH . F 6 HOH A 4 404 9 HOH HOH . F 6 HOH A 5 405 47 HOH HOH . F 6 HOH A 6 406 50 HOH HOH . F 6 HOH A 7 407 19 HOH HOH . F 6 HOH A 8 408 129 HOH HOH . F 6 HOH A 9 409 65 HOH HOH . F 6 HOH A 10 410 125 HOH HOH . F 6 HOH A 11 411 98 HOH HOH . F 6 HOH A 12 412 91 HOH HOH . F 6 HOH A 13 413 81 HOH HOH . F 6 HOH A 14 414 84 HOH HOH . F 6 HOH A 15 415 16 HOH HOH . F 6 HOH A 16 416 70 HOH HOH . F 6 HOH A 17 417 123 HOH HOH . F 6 HOH A 18 418 52 HOH HOH . F 6 HOH A 19 419 166 HOH HOH . F 6 HOH A 20 420 99 HOH HOH . F 6 HOH A 21 421 90 HOH HOH . F 6 HOH A 22 422 7 HOH HOH . F 6 HOH A 23 423 33 HOH HOH . F 6 HOH A 24 424 59 HOH HOH . F 6 HOH A 25 425 93 HOH HOH . F 6 HOH A 26 426 57 HOH HOH . F 6 HOH A 27 427 126 HOH HOH . F 6 HOH A 28 428 10 HOH HOH . F 6 HOH A 29 429 2 HOH HOH . F 6 HOH A 30 430 78 HOH HOH . F 6 HOH A 31 431 8 HOH HOH . F 6 HOH A 32 432 148 HOH HOH . F 6 HOH A 33 433 12 HOH HOH . F 6 HOH A 34 434 138 HOH HOH . F 6 HOH A 35 435 107 HOH HOH . F 6 HOH A 36 436 92 HOH HOH . F 6 HOH A 37 437 48 HOH HOH . F 6 HOH A 38 438 61 HOH HOH . F 6 HOH A 39 439 30 HOH HOH . F 6 HOH A 40 440 77 HOH HOH . F 6 HOH A 41 441 54 HOH HOH . F 6 HOH A 42 442 28 HOH HOH . F 6 HOH A 43 443 21 HOH HOH . F 6 HOH A 44 444 108 HOH HOH . F 6 HOH A 45 445 96 HOH HOH . F 6 HOH A 46 446 5 HOH HOH . F 6 HOH A 47 447 3 HOH HOH . F 6 HOH A 48 448 69 HOH HOH . F 6 HOH A 49 449 45 HOH HOH . F 6 HOH A 50 450 66 HOH HOH . F 6 HOH A 51 451 117 HOH HOH . F 6 HOH A 52 452 83 HOH HOH . F 6 HOH A 53 453 171 HOH HOH . F 6 HOH A 54 454 25 HOH HOH . F 6 HOH A 55 455 44 HOH HOH . F 6 HOH A 56 456 101 HOH HOH . F 6 HOH A 57 457 68 HOH HOH . F 6 HOH A 58 458 56 HOH HOH . F 6 HOH A 59 459 71 HOH HOH . F 6 HOH A 60 460 94 HOH HOH . F 6 HOH A 61 461 55 HOH HOH . F 6 HOH A 62 462 34 HOH HOH . F 6 HOH A 63 463 22 HOH HOH . F 6 HOH A 64 464 104 HOH HOH . F 6 HOH A 65 465 31 HOH HOH . F 6 HOH A 66 466 140 HOH HOH . F 6 HOH A 67 467 75 HOH HOH . F 6 HOH A 68 468 15 HOH HOH . F 6 HOH A 69 469 11 HOH HOH . F 6 HOH A 70 470 40 HOH HOH . F 6 HOH A 71 471 17 HOH HOH . F 6 HOH A 72 472 27 HOH HOH . F 6 HOH A 73 473 42 HOH HOH . F 6 HOH A 74 474 36 HOH HOH . F 6 HOH A 75 475 109 HOH HOH . F 6 HOH A 76 476 39 HOH HOH . F 6 HOH A 77 477 18 HOH HOH . F 6 HOH A 78 478 118 HOH HOH . F 6 HOH A 79 479 139 HOH HOH . F 6 HOH A 80 480 86 HOH HOH . F 6 HOH A 81 481 1 HOH HOH . F 6 HOH A 82 482 147 HOH HOH . F 6 HOH A 83 483 142 HOH HOH . F 6 HOH A 84 484 144 HOH HOH . F 6 HOH A 85 485 62 HOH HOH . F 6 HOH A 86 486 60 HOH HOH . F 6 HOH A 87 487 180 HOH HOH . F 6 HOH A 88 488 24 HOH HOH . F 6 HOH A 89 489 37 HOH HOH . F 6 HOH A 90 490 105 HOH HOH . F 6 HOH A 91 491 168 HOH HOH . F 6 HOH A 92 492 43 HOH HOH . F 6 HOH A 93 493 14 HOH HOH . F 6 HOH A 94 494 76 HOH HOH . F 6 HOH A 95 495 149 HOH HOH . F 6 HOH A 96 496 53 HOH HOH . F 6 HOH A 97 497 82 HOH HOH . F 6 HOH A 98 498 13 HOH HOH . F 6 HOH A 99 499 49 HOH HOH . F 6 HOH A 100 500 35 HOH HOH . F 6 HOH A 101 501 20 HOH HOH . F 6 HOH A 102 502 23 HOH HOH . F 6 HOH A 103 503 58 HOH HOH . F 6 HOH A 104 504 73 HOH HOH . F 6 HOH A 105 505 6 HOH HOH . F 6 HOH A 106 506 113 HOH HOH . F 6 HOH A 107 507 187 HOH HOH . F 6 HOH A 108 508 102 HOH HOH . F 6 HOH A 109 509 80 HOH HOH . F 6 HOH A 110 510 143 HOH HOH . F 6 HOH A 111 511 114 HOH HOH . F 6 HOH A 112 512 63 HOH HOH . F 6 HOH A 113 513 64 HOH HOH . F 6 HOH A 114 514 181 HOH HOH . F 6 HOH A 115 515 161 HOH HOH . F 6 HOH A 116 516 165 HOH HOH . F 6 HOH A 117 517 89 HOH HOH . F 6 HOH A 118 518 137 HOH HOH . F 6 HOH A 119 519 29 HOH HOH . F 6 HOH A 120 520 136 HOH HOH . F 6 HOH A 121 521 154 HOH HOH . F 6 HOH A 122 522 100 HOH HOH . F 6 HOH A 123 523 106 HOH HOH . F 6 HOH A 124 524 115 HOH HOH . F 6 HOH A 125 525 103 HOH HOH . F 6 HOH A 126 526 97 HOH HOH . F 6 HOH A 127 527 26 HOH HOH . F 6 HOH A 128 528 153 HOH HOH . F 6 HOH A 129 529 74 HOH HOH . F 6 HOH A 130 530 182 HOH HOH . F 6 HOH A 131 531 132 HOH HOH . F 6 HOH A 132 532 128 HOH HOH . F 6 HOH A 133 533 112 HOH HOH . F 6 HOH A 134 534 41 HOH HOH . F 6 HOH A 135 535 150 HOH HOH . F 6 HOH A 136 536 124 HOH HOH . F 6 HOH A 137 537 95 HOH HOH . F 6 HOH A 138 538 160 HOH HOH . F 6 HOH A 139 539 146 HOH HOH . F 6 HOH A 140 540 122 HOH HOH . F 6 HOH A 141 541 175 HOH HOH . F 6 HOH A 142 542 121 HOH HOH . F 6 HOH A 143 543 127 HOH HOH . F 6 HOH A 144 544 141 HOH HOH . F 6 HOH A 145 545 111 HOH HOH . F 6 HOH A 146 546 79 HOH HOH . F 6 HOH A 147 547 67 HOH HOH . F 6 HOH A 148 548 172 HOH HOH . F 6 HOH A 149 549 110 HOH HOH . F 6 HOH A 150 550 167 HOH HOH . F 6 HOH A 151 551 157 HOH HOH . F 6 HOH A 152 552 169 HOH HOH . F 6 HOH A 153 553 135 HOH HOH . F 6 HOH A 154 554 159 HOH HOH . F 6 HOH A 155 555 151 HOH HOH . F 6 HOH A 156 556 156 HOH HOH . F 6 HOH A 157 557 173 HOH HOH . F 6 HOH A 158 558 177 HOH HOH . F 6 HOH A 159 559 87 HOH HOH . F 6 HOH A 160 560 183 HOH HOH . F 6 HOH A 161 561 174 HOH HOH . F 6 HOH A 162 562 85 HOH HOH . F 6 HOH A 163 563 130 HOH HOH . F 6 HOH A 164 564 158 HOH HOH . F 6 HOH A 165 565 32 HOH HOH . F 6 HOH A 166 566 178 HOH HOH . F 6 HOH A 167 567 38 HOH HOH . F 6 HOH A 168 568 145 HOH HOH . F 6 HOH A 169 569 164 HOH HOH . F 6 HOH A 170 570 116 HOH HOH . F 6 HOH A 171 571 120 HOH HOH . F 6 HOH A 172 572 119 HOH HOH . F 6 HOH A 173 573 155 HOH HOH . F 6 HOH A 174 574 163 HOH HOH . F 6 HOH A 175 575 51 HOH HOH . F 6 HOH A 176 576 88 HOH HOH . F 6 HOH A 177 577 170 HOH HOH . F 6 HOH A 178 578 185 HOH HOH . F 6 HOH A 179 579 184 HOH HOH . F 6 HOH A 180 580 72 HOH HOH . F 6 HOH A 181 581 186 HOH HOH . F 6 HOH A 182 582 176 HOH HOH . F 6 HOH A 183 583 152 HOH HOH . F 6 HOH A 184 584 162 HOH HOH . F 6 HOH A 185 585 133 HOH HOH . F 6 HOH A 186 586 179 HOH HOH . F 6 HOH A 187 587 134 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 JV2 . . . E 5 0.673 -2.663 -27.727 1 16.71 ? C1 JV2 304 A 1 HETATM 2 C C3 JV2 . . . E 5 1.787 -3.627 -25.571 1 18.74 ? C3 JV2 304 A 1 HETATM 3 C C4 JV2 . . . E 5 3.127 -3.414 -25.199 1 20.11 ? C4 JV2 304 A 1 HETATM 4 C C5 JV2 . . . E 5 3.452 -3.014 -23.906 1 23.93 ? C5 JV2 304 A 1 HETATM 5 C C6 JV2 . . . E 5 2.43 -2.857 -22.967 1 15.6 ? C6 JV2 304 A 1 HETATM 6 C C7 JV2 . . . E 5 1.109 -3.073 -23.336 1 14.17 ? C7 JV2 304 A 1 HETATM 7 C C8 JV2 . . . E 5 0.741 -3.426 -24.625 1 15.28 ? C8 JV2 304 A 1 HETATM 8 C C11 JV2 . . . E 5 -1.414 -5.491 -23.592 1 13.8 ? C11 JV2 304 A 1 HETATM 9 C C12 JV2 . . . E 5 -2.269 -4.259 -23.221 1 12.87 ? C12 JV2 304 A 1 HETATM 10 N N13 JV2 . . . E 5 -1.698 -3.164 -24.003 1 12.28 ? N13 JV2 304 A 1 HETATM 11 C C16 JV2 . . . E 5 -1.374 -0.83 -24.704 1 12.7 ? C16 JV2 304 A 1 HETATM 12 C C18 JV2 . . . E 5 -3.22 0.606 -25.213 1 12.24 ? C18 JV2 304 A 1 HETATM 13 C C21 JV2 . . . E 5 -5.129 2.107 -25.556 1 11.95 ? C21 JV2 304 A 1 HETATM 14 C C23 JV2 . . . E 5 -6.992 3.584 -24.694 1 10.8 ? C23 JV2 304 A 1 HETATM 15 C C24 JV2 . . . E 5 -8.037 3.864 -23.812 1 11.48 ? C24 JV2 304 A 1 HETATM 16 C C27 JV2 . . . E 5 -10.12 4.534 -21.929 1 12.88 ? C27 JV2 304 A 1 HETATM 17 C C30 JV2 . . . E 5 -7.518 1.855 -22.585 1 11.37 ? C30 JV2 304 A 1 HETATM 18 C C31 JV2 . . . E 5 -6.493 1.585 -23.481 1 11.69 ? C31 JV2 304 A 1 HETATM 19 C C32 JV2 . . . E 5 -9.401 5.632 -21.133 1 13.8 ? C32 JV2 304 A 1 HETATM 20 C C35 JV2 . . . E 5 -8.085 6.032 -21.801 1 13.02 ? C35 JV2 304 A 1 HETATM 21 S S2 JV2 . . . E 5 1.4 -4.154 -27.208 1 20.44 ? S2 JV2 304 A 1 HETATM 22 C C9 JV2 . . . E 5 -0.737 -3.69 -24.973 1 13.85 ? C9 JV2 304 A 1 HETATM 23 C C10 JV2 . . . E 5 -1.007 -5.2 -25.034 1 13.77 ? C10 JV2 304 A 1 HETATM 24 C C14 JV2 . . . E 5 -2.053 -1.883 -23.827 1 11.78 ? C14 JV2 304 A 1 HETATM 25 O O15 JV2 . . . E 5 -2.88 -1.623 -22.958 1 11.91 ? O15 JV2 304 A 1 HETATM 26 N N17 JV2 . . . E 5 -2.104 0.391 -24.502 1 12.8 ? N17 JV2 304 A 1 HETATM 27 O O19 JV2 . . . E 5 -3.574 -0.17 -26.117 1 13.19 ? O19 JV2 304 A 1 HETATM 28 N N20 JV2 . . . E 5 -3.912 1.711 -24.89 1 12.95 ? N20 JV2 304 A 1 HETATM 29 C C22 JV2 . . . E 5 -6.218 2.445 -24.54 1 10.96 ? C22 JV2 304 A 1 HETATM 30 C C25 JV2 . . . E 5 -8.836 5.148 -23.982 1 12.33 ? C25 JV2 304 A 1 HETATM 31 C C26 JV2 . . . E 5 -10.243 4.946 -23.402 1 12.33 ? C26 JV2 304 A 1 HETATM 32 N N28 JV2 . . . E 5 -9.355 3.273 -21.856 1 11.64 ? N28 JV2 304 A 1 HETATM 33 C C29 JV2 . . . E 5 -8.293 3.013 -22.748 1 11.19 ? C29 JV2 304 A 1 HETATM 34 O O34 JV2 . . . E 5 -10.267 6.778 -21.042 1 14.51 ? O34 JV2 304 A 1 HETATM 35 O O36 JV2 . . . E 5 -8.258 6.24 -23.212 1 13.71 ? O36 JV2 304 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #