data_6R8R # _model_server_result.job_id gSrpFoivsExZJhWQngI4Eg _model_server_result.datetime_utc '2024-11-05 21:20:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6r8r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":522}' # _entry.id 6R8R # _exptl.entry_id 6R8R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6R8R _cell.length_a 60.34 _cell.length_b 71.72 _cell.length_c 78.13 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6R8R _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 Q N N ? 6 R N N ? 6 S N N ? 6 T N N ? 6 U N N ? 6 V N N ? 6 W N N ? 6 X N N ? 6 Y N N ? 6 Z N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 202 A CYS 279 1_555 A SG CYS 208 A CYS 285 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 A SG CYS 202 A CYS 279 1_555 A SG CYS 208 A CYS 285 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.046 ? disulf ? disulf5 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? disulf ? disulf6 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf7 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf8 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.041 ? covale ? covale1 A ND2 ASN 19 A ASN 96 1_555 B C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 92 n n C1 C2 EDO sing 93 n n C1 H11 EDO sing 94 n n C1 H12 EDO sing 95 n n O1 HO1 EDO sing 96 n n C2 O2 EDO sing 97 n n C2 H21 EDO sing 98 n n C2 H22 EDO sing 99 n n O2 HO2 EDO sing 100 n n # _atom_sites.entry_id 6R8R _atom_sites.fract_transf_matrix[1][1] 0.016573 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013943 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012799 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 501 1000 NAG NAG . C 3 JV8 A 1 502 1 JV8 400 . D 4 SO4 A 1 503 2007 SO4 SO4 . E 4 SO4 A 1 504 2011 SO4 SO4 . F 4 SO4 A 1 505 2013 SO4 SO4 . G 4 SO4 A 1 506 2015 SO4 SO4 . H 4 SO4 A 1 507 2016 SO4 SO4 . I 4 SO4 A 1 508 2018 SO4 SO4 . J 4 SO4 A 1 509 2019 SO4 SO4 . K 4 SO4 A 1 510 2023 SO4 SO4 . L 5 DMS A 1 511 2025 DMS DMS . M 5 DMS A 1 512 2026 DMS DMS . N 5 DMS A 1 513 2027 DMS DMS . O 5 DMS A 1 514 2031 DMS DMS . P 5 DMS A 1 515 2034 DMS DMS . Q 6 EDO A 1 516 2040 EDO EDO . R 6 EDO A 1 517 2041 EDO EDO . S 6 EDO A 1 518 2043 EDO EDO . T 6 EDO A 1 519 2044 EDO EDO . U 6 EDO A 1 520 2045 EDO EDO . V 6 EDO A 1 521 2046 EDO EDO . W 6 EDO A 1 522 2047 EDO EDO . X 6 EDO A 1 523 2048 EDO EDO . Y 6 EDO A 1 524 2049 EDO EDO . Z 6 EDO A 1 525 2050 EDO EDO . AA 7 HOH A 1 601 3108 HOH HOH . AA 7 HOH A 2 602 3082 HOH HOH . AA 7 HOH A 3 603 3290 HOH HOH . AA 7 HOH A 4 604 3240 HOH HOH . AA 7 HOH A 5 605 3293 HOH HOH . AA 7 HOH A 6 606 3163 HOH HOH . AA 7 HOH A 7 607 3105 HOH HOH . AA 7 HOH A 8 608 3194 HOH HOH . AA 7 HOH A 9 609 3125 HOH HOH . AA 7 HOH A 10 610 3147 HOH HOH . AA 7 HOH A 11 611 3136 HOH HOH . AA 7 HOH A 12 612 3140 HOH HOH . AA 7 HOH A 13 613 3096 HOH HOH . AA 7 HOH A 14 614 3132 HOH HOH . AA 7 HOH A 15 615 3098 HOH HOH . AA 7 HOH A 16 616 3013 HOH HOH . AA 7 HOH A 17 617 3208 HOH HOH . AA 7 HOH A 18 618 3070 HOH HOH . AA 7 HOH A 19 619 3075 HOH HOH . AA 7 HOH A 20 620 3019 HOH HOH . AA 7 HOH A 21 621 3126 HOH HOH . AA 7 HOH A 22 622 3050 HOH HOH . AA 7 HOH A 23 623 3227 HOH HOH . AA 7 HOH A 24 624 3109 HOH HOH . AA 7 HOH A 25 625 3144 HOH HOH . AA 7 HOH A 26 626 3036 HOH HOH . AA 7 HOH A 27 627 3134 HOH HOH . AA 7 HOH A 28 628 3186 HOH HOH . AA 7 HOH A 29 629 3127 HOH HOH . AA 7 HOH A 30 630 3155 HOH HOH . AA 7 HOH A 31 631 3059 HOH HOH . AA 7 HOH A 32 632 3266 HOH HOH . AA 7 HOH A 33 633 3287 HOH HOH . AA 7 HOH A 34 634 3064 HOH HOH . AA 7 HOH A 35 635 3009 HOH HOH . AA 7 HOH A 36 636 3040 HOH HOH . AA 7 HOH A 37 637 3079 HOH HOH . AA 7 HOH A 38 638 3020 HOH HOH . AA 7 HOH A 39 639 3119 HOH HOH . AA 7 HOH A 40 640 3046 HOH HOH . AA 7 HOH A 41 641 3099 HOH HOH . AA 7 HOH A 42 642 3001 HOH HOH . AA 7 HOH A 43 643 3012 HOH HOH . AA 7 HOH A 44 644 3054 HOH HOH . AA 7 HOH A 45 645 3150 HOH HOH . AA 7 HOH A 46 646 3047 HOH HOH . AA 7 HOH A 47 647 3010 HOH HOH . AA 7 HOH A 48 648 3097 HOH HOH . AA 7 HOH A 49 649 3006 HOH HOH . AA 7 HOH A 50 650 3026 HOH HOH . AA 7 HOH A 51 651 3048 HOH HOH . AA 7 HOH A 52 652 3003 HOH HOH . AA 7 HOH A 53 653 3027 HOH HOH . AA 7 HOH A 54 654 3072 HOH HOH . AA 7 HOH A 55 655 3014 HOH HOH . AA 7 HOH A 56 656 3043 HOH HOH . AA 7 HOH A 57 657 3051 HOH HOH . AA 7 HOH A 58 658 3066 HOH HOH . AA 7 HOH A 59 659 3005 HOH HOH . AA 7 HOH A 60 660 3063 HOH HOH . AA 7 HOH A 61 661 3162 HOH HOH . AA 7 HOH A 62 662 3011 HOH HOH . AA 7 HOH A 63 663 3031 HOH HOH . AA 7 HOH A 64 664 3294 HOH HOH . AA 7 HOH A 65 665 3033 HOH HOH . AA 7 HOH A 66 666 3023 HOH HOH . AA 7 HOH A 67 667 3276 HOH HOH . AA 7 HOH A 68 668 3280 HOH HOH . AA 7 HOH A 69 669 3015 HOH HOH . AA 7 HOH A 70 670 3049 HOH HOH . AA 7 HOH A 71 671 3270 HOH HOH . AA 7 HOH A 72 672 3029 HOH HOH . AA 7 HOH A 73 673 3181 HOH HOH . AA 7 HOH A 74 674 3092 HOH HOH . AA 7 HOH A 75 675 3057 HOH HOH . AA 7 HOH A 76 676 3217 HOH HOH . AA 7 HOH A 77 677 3080 HOH HOH . AA 7 HOH A 78 678 3224 HOH HOH . AA 7 HOH A 79 679 3067 HOH HOH . AA 7 HOH A 80 680 3016 HOH HOH . AA 7 HOH A 81 681 3037 HOH HOH . AA 7 HOH A 82 682 3024 HOH HOH . AA 7 HOH A 83 683 3113 HOH HOH . AA 7 HOH A 84 684 3061 HOH HOH . AA 7 HOH A 85 685 3041 HOH HOH . AA 7 HOH A 86 686 3282 HOH HOH . AA 7 HOH A 87 687 3004 HOH HOH . AA 7 HOH A 88 688 3236 HOH HOH . AA 7 HOH A 89 689 3102 HOH HOH . AA 7 HOH A 90 690 3210 HOH HOH . AA 7 HOH A 91 691 3060 HOH HOH . AA 7 HOH A 92 692 3062 HOH HOH . AA 7 HOH A 93 693 3283 HOH HOH . AA 7 HOH A 94 694 3039 HOH HOH . AA 7 HOH A 95 695 3007 HOH HOH . AA 7 HOH A 96 696 3149 HOH HOH . AA 7 HOH A 97 697 3071 HOH HOH . AA 7 HOH A 98 698 3030 HOH HOH . AA 7 HOH A 99 699 3085 HOH HOH . AA 7 HOH A 100 700 3112 HOH HOH . AA 7 HOH A 101 701 3088 HOH HOH . AA 7 HOH A 102 702 3078 HOH HOH . AA 7 HOH A 103 703 3056 HOH HOH . AA 7 HOH A 104 704 3065 HOH HOH . AA 7 HOH A 105 705 3091 HOH HOH . AA 7 HOH A 106 706 3277 HOH HOH . AA 7 HOH A 107 707 3042 HOH HOH . AA 7 HOH A 108 708 3292 HOH HOH . AA 7 HOH A 109 709 3035 HOH HOH . AA 7 HOH A 110 710 3146 HOH HOH . AA 7 HOH A 111 711 3278 HOH HOH . AA 7 HOH A 112 712 3101 HOH HOH . AA 7 HOH A 113 713 3255 HOH HOH . AA 7 HOH A 114 714 3166 HOH HOH . AA 7 HOH A 115 715 3028 HOH HOH . AA 7 HOH A 116 716 3008 HOH HOH . AA 7 HOH A 117 717 3114 HOH HOH . AA 7 HOH A 118 718 3045 HOH HOH . AA 7 HOH A 119 719 3017 HOH HOH . AA 7 HOH A 120 720 3002 HOH HOH . AA 7 HOH A 121 721 3022 HOH HOH . AA 7 HOH A 122 722 3044 HOH HOH . AA 7 HOH A 123 723 3193 HOH HOH . AA 7 HOH A 124 724 3095 HOH HOH . AA 7 HOH A 125 725 3116 HOH HOH . AA 7 HOH A 126 726 3021 HOH HOH . AA 7 HOH A 127 727 3087 HOH HOH . AA 7 HOH A 128 728 3173 HOH HOH . AA 7 HOH A 129 729 3094 HOH HOH . AA 7 HOH A 130 730 3083 HOH HOH . AA 7 HOH A 131 731 3152 HOH HOH . AA 7 HOH A 132 732 3069 HOH HOH . AA 7 HOH A 133 733 3170 HOH HOH . AA 7 HOH A 134 734 3034 HOH HOH . AA 7 HOH A 135 735 3018 HOH HOH . AA 7 HOH A 136 736 3025 HOH HOH . AA 7 HOH A 137 737 3052 HOH HOH . AA 7 HOH A 138 738 3239 HOH HOH . AA 7 HOH A 139 739 3151 HOH HOH . AA 7 HOH A 140 740 3117 HOH HOH . AA 7 HOH A 141 741 3073 HOH HOH . AA 7 HOH A 142 742 3279 HOH HOH . AA 7 HOH A 143 743 3084 HOH HOH . AA 7 HOH A 144 744 3128 HOH HOH . AA 7 HOH A 145 745 3169 HOH HOH . AA 7 HOH A 146 746 3167 HOH HOH . AA 7 HOH A 147 747 3068 HOH HOH . AA 7 HOH A 148 748 3291 HOH HOH . AA 7 HOH A 149 749 3286 HOH HOH . AA 7 HOH A 150 750 3032 HOH HOH . AA 7 HOH A 151 751 3118 HOH HOH . AA 7 HOH A 152 752 3038 HOH HOH . AA 7 HOH A 153 753 3179 HOH HOH . AA 7 HOH A 154 754 3122 HOH HOH . AA 7 HOH A 155 755 3135 HOH HOH . AA 7 HOH A 156 756 3171 HOH HOH . AA 7 HOH A 157 757 3231 HOH HOH . AA 7 HOH A 158 758 3256 HOH HOH . AA 7 HOH A 159 759 3235 HOH HOH . AA 7 HOH A 160 760 3281 HOH HOH . AA 7 HOH A 161 761 3123 HOH HOH . AA 7 HOH A 162 762 3211 HOH HOH . AA 7 HOH A 163 763 3284 HOH HOH . AA 7 HOH A 164 764 3275 HOH HOH . AA 7 HOH A 165 765 3158 HOH HOH . AA 7 HOH A 166 766 3288 HOH HOH . AA 7 HOH A 167 767 3142 HOH HOH . AA 7 HOH A 168 768 3153 HOH HOH . AA 7 HOH A 169 769 3100 HOH HOH . AA 7 HOH A 170 770 3289 HOH HOH . AA 7 HOH A 171 771 3184 HOH HOH . AA 7 HOH A 172 772 3086 HOH HOH . AA 7 HOH A 173 773 3115 HOH HOH . AA 7 HOH A 174 774 3257 HOH HOH . AA 7 HOH A 175 775 3093 HOH HOH . AA 7 HOH A 176 776 3251 HOH HOH . AA 7 HOH A 177 777 3263 HOH HOH . AA 7 HOH A 178 778 3174 HOH HOH . AA 7 HOH A 179 779 3141 HOH HOH . AA 7 HOH A 180 780 3106 HOH HOH . AA 7 HOH A 181 781 3089 HOH HOH . AA 7 HOH A 182 782 3145 HOH HOH . AA 7 HOH A 183 783 3074 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . W 6 -17.782 19.659 -11.382 1 44.68 ? C1 EDO 522 A 1 HETATM 2 O O1 EDO . . . W 6 -17.346 19.322 -12.709 1 42.71 ? O1 EDO 522 A 1 HETATM 3 C C2 EDO . . . W 6 -19.3 19.608 -11.355 1 45.87 ? C2 EDO 522 A 1 HETATM 4 O O2 EDO . . . W 6 -19.7 18.623 -12.318 1 47.88 ? O2 EDO 522 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #