data_6R8U
#
_model_server_result.job_id            DnTlOJio1YjazT3qg8UqHA 
_model_server_result.datetime_utc      '2024-10-19 13:21:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6r8u 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":501}' 
#
_entry.id    6R8U 
#
_exptl.entry_id    6R8U 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6R8U 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6R8U 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 13 n n 
P O2P AMP sing 14 n n 
P O3P AMP sing 15 n n 
P O5' AMP sing 16 n n 
O2P HOP2 AMP sing 17 n n 
O3P HOP3 AMP sing 18 n n 
O5' C5' AMP sing 19 n n 
C5' C4' AMP sing 20 n n 
C5' "H5'1" AMP sing 21 n n 
C5' "H5'2" AMP sing 22 n n 
C4' O4' AMP sing 23 n n 
C4' C3' AMP sing 24 n n 
C4' H4' AMP sing 25 n n 
O4' C1' AMP sing 26 n n 
C3' O3' AMP sing 27 n n 
C3' C2' AMP sing 28 n n 
C3' H3' AMP sing 29 n n 
O3' HO3' AMP sing 30 n n 
C2' O2' AMP sing 31 n n 
C2' C1' AMP sing 32 n n 
C2' H2' AMP sing 33 n n 
O2' HO2' AMP sing 34 n n 
C1' N9 AMP sing 35 n n 
C1' H1' AMP sing 36 n n 
N9 C8 AMP sing 37 n y 
N9 C4 AMP sing 38 n y 
C8 N7 AMP doub 39 n y 
C8 H8 AMP sing 40 n n 
N7 C5 AMP sing 41 n y 
C5 C6 AMP sing 42 n y 
C5 C4 AMP doub 43 n y 
C6 N6 AMP sing 44 n n 
C6 N1 AMP doub 45 n y 
N6 HN61 AMP sing 46 n n 
N6 HN62 AMP sing 47 n n 
N1 C2 AMP sing 48 n y 
C2 N3 AMP doub 49 n y 
C2 H2 AMP sing 50 n n 
N3 C4 AMP sing 51 n y 
#
_atom_sites.entry_id                     6R8U 
_atom_sites.fract_transf_matrix[1][1]    0.004776 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004776 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004776 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 AMP A 1 501 501 AMP AMP . 
F 2 AMP B 1 501 501 AMP AMP . 
G 2 AMP D 1 501 501 AMP AMP . 
H 2 AMP C 1 501 501 AMP AMP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . F 2 102.795 119.931 122.476 1 127.05 ? P AMP 501 B 1 
HETATM 2 O O1P AMP . . . F 2 102.314 119.25 121.217 1 127.05 ? O1P AMP 501 B 1 
HETATM 3 O O2P AMP . . . F 2 102.739 121.415 122.368 1 127.05 ? O2P AMP 501 B 1 
HETATM 4 O O3P AMP . . . F 2 104.049 119.376 123.119 1 127.05 ? O3P AMP 501 B 1 
HETATM 5 O O5' AMP . . . F 2 101.686 119.613 123.568 1 127.05 ? O5' AMP 501 B 1 
HETATM 6 C C5' AMP . . . F 2 101.742 120.218 124.853 1 127.05 ? C5' AMP 501 B 1 
HETATM 7 C C4' AMP . . . F 2 100.427 120.087 125.56 1 127.05 ? C4' AMP 501 B 1 
HETATM 8 O O4' AMP . . . F 2 99.448 120.852 124.803 1 127.05 ? O4' AMP 501 B 1 
HETATM 9 C C3' AMP . . . F 2 99.887 118.664 125.631 1 127.05 ? C3' AMP 501 B 1 
HETATM 10 O O3' AMP . . . F 2 99.199 118.48 126.861 1 127.05 ? O3' AMP 501 B 1 
HETATM 11 C C2' AMP . . . F 2 98.903 118.609 124.469 1 127.05 ? C2' AMP 501 B 1 
HETATM 12 O O2' AMP . . . F 2 97.878 117.642 124.605 1 127.05 ? O2' AMP 501 B 1 
HETATM 13 C C1' AMP . . . F 2 98.345 120.028 124.511 1 127.05 ? C1' AMP 501 B 1 
HETATM 14 N N9 AMP . . . F 2 97.762 120.495 123.255 1 127.05 ? N9 AMP 501 B 1 
HETATM 15 C C8 AMP . . . F 2 98.068 120.189 121.977 1 127.05 ? C8 AMP 501 B 1 
HETATM 16 N N7 AMP . . . F 2 97.26 120.88 121.137 1 127.05 ? N7 AMP 501 B 1 
HETATM 17 C C5 AMP . . . F 2 96.407 121.61 121.882 1 127.05 ? C5 AMP 501 B 1 
HETATM 18 C C6 AMP . . . F 2 95.31 122.561 121.637 1 127.05 ? C6 AMP 501 B 1 
HETATM 19 N N6 AMP . . . F 2 94.914 122.845 120.371 1 127.05 ? N6 AMP 501 B 1 
HETATM 20 N N1 AMP . . . F 2 94.686 123.109 122.699 1 127.05 ? N1 AMP 501 B 1 
HETATM 21 C C2 AMP . . . F 2 95.074 122.839 123.958 1 127.05 ? C2 AMP 501 B 1 
HETATM 22 N N3 AMP . . . F 2 96.075 121.983 124.242 1 127.05 ? N3 AMP 501 B 1 
HETATM 23 C C4 AMP . . . F 2 96.756 121.345 123.269 1 127.05 ? C4 AMP 501 B 1 
HETATM 24 H "H5'1" AMP . . . F 2 101.974 121.156 124.764 1 127.05 ? "H5'1" AMP 501 B 1 
HETATM 25 H "H5'2" AMP . . . F 2 102.441 119.802 125.382 1 127.05 ? "H5'2" AMP 501 B 1 
HETATM 26 H H4' AMP . . . F 2 100.57 120.395 126.469 1 127.05 ? H4' AMP 501 B 1 
HETATM 27 H H3' AMP . . . F 2 100.575 117.982 125.581 1 127.05 ? H3' AMP 501 B 1 
HETATM 28 H HO3' AMP . . . F 2 98.469 118.089 126.718 1 127.05 ? HO3' AMP 501 B 1 
HETATM 29 H H2' AMP . . . F 2 99.321 118.341 123.635 1 127.05 ? H2' AMP 501 B 1 
HETATM 30 H HO2' AMP . . . F 2 97.644 117.373 123.845 1 127.05 ? HO2' AMP 501 B 1 
HETATM 31 H H1' AMP . . . F 2 97.626 120.052 125.162 1 127.05 ? H1' AMP 501 B 1 
HETATM 32 H H8 AMP . . . F 2 98.761 119.569 121.701 1 127.05 ? H8 AMP 501 B 1 
HETATM 33 H HN61 AMP . . . F 2 95.304 122.469 119.703 1 127.05 ? HN61 AMP 501 B 1 
HETATM 34 H HN62 AMP . . . F 2 94.272 123.402 120.237 1 127.05 ? HN62 AMP 501 B 1 
HETATM 35 H H2 AMP . . . F 2 94.615 123.278 124.691 1 127.05 ? H2 AMP 501 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           35 
#