data_6R8W # _model_server_result.job_id 3K40y73-9M0oad0skj5awQ _model_server_result.datetime_utc '2024-11-08 09:04:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6r8w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 6R8W # _exptl.entry_id 6R8W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 425.478 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(exo-3,5-Dioxo-4-aza-tricyclo[5.2.1.02,6]dec-4-yl)-N-((1R,9R,10S)-10-hydroxy-12-oxa-8-aza-tricyclo[7.3.1.02,7]trideca-2(7),3,5-trien-4-ylmethyl)-acetamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6R8W _cell.length_a 57.099 _cell.length_b 57.099 _cell.length_c 116.073 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6R8W _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H27 N3 O5' _chem_comp.formula_weight 425.478 _chem_comp.id JVH _chem_comp.mon_nstd_flag . _chem_comp.name 2-(exo-3,5-Dioxo-4-aza-tricyclo[5.2.1.02,6]dec-4-yl)-N-((1R,9R,10S)-10-hydroxy-12-oxa-8-aza-tricyclo[7.3.1.02,7]trideca-2(7),3,5-trien-4-ylmethyl)-acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 JVH doub 173 n n O6 C5 JVH doub 174 n n C32 C34 JVH sing 175 n n C32 C38 JVH sing 176 n n C32 C30 JVH sing 177 n n C8 N7 JVH sing 178 n n C8 C9 JVH sing 179 n n C5 N7 JVH sing 180 n n C5 C4 JVH sing 181 n n C2 C30 JVH sing 182 n n C2 N3 JVH sing 183 n n C34 C35 JVH sing 184 n n C38 C37 JVH sing 185 n n C4 N3 JVH sing 186 n n C30 C28 JVH sing 187 n n C10 C9 JVH doub 188 n y C10 C11 JVH sing 189 n y N3 C26 JVH sing 190 n n C9 C25 JVH sing 191 n y C17 C11 JVH sing 192 n n C17 C16 JVH sing 193 n n C17 O19 JVH sing 194 n n C11 C12 JVH doub 195 n y C35 C37 JVH sing 196 n n C35 C28 JVH sing 197 n n C26 C28 JVH sing 198 n n C26 O27 JVH doub 199 n n C25 C24 JVH doub 200 n y C16 C14 JVH sing 201 n n O19 C20 JVH sing 202 n n C12 C24 JVH sing 203 n y C12 N13 JVH sing 204 n n C14 N13 JVH sing 205 n n C14 C21 JVH sing 206 n n C20 C21 JVH sing 207 n n C21 O23 JVH sing 208 n n C4 H1 JVH sing 209 n n C4 H2 JVH sing 210 n n C8 H3 JVH sing 211 n n C8 H4 JVH sing 212 n n N13 H5 JVH sing 213 n n C16 H6 JVH sing 214 n n C16 H7 JVH sing 215 n n C17 H8 JVH sing 216 n n C21 H9 JVH sing 217 n n C24 H10 JVH sing 218 n n C30 H11 JVH sing 219 n n C32 H12 JVH sing 220 n n C34 H13 JVH sing 221 n n C34 H14 JVH sing 222 n n C35 H15 JVH sing 223 n n C37 H16 JVH sing 224 n n C37 H17 JVH sing 225 n n C38 H18 JVH sing 226 n n C38 H19 JVH sing 227 n n N7 H20 JVH sing 228 n n C10 H21 JVH sing 229 n n C14 H22 JVH sing 230 n n C20 H23 JVH sing 231 n n C20 H24 JVH sing 232 n n O23 H25 JVH sing 233 n n C25 H26 JVH sing 234 n n C28 H27 JVH sing 235 n n # _atom_sites.entry_id 6R8W _atom_sites.fract_transf_matrix[1][1] 0.017513 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017513 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008615 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 O4B A 1 301 1 O4B CPE . C 3 P6G A 1 302 2 P6G P6G . D 4 JVH A 1 303 1 JVH INX . E 5 HOH A 1 401 81 HOH HOH . E 5 HOH A 2 402 104 HOH HOH . E 5 HOH A 3 403 18 HOH HOH . E 5 HOH A 4 404 8 HOH HOH . E 5 HOH A 5 405 111 HOH HOH . E 5 HOH A 6 406 38 HOH HOH . E 5 HOH A 7 407 65 HOH HOH . E 5 HOH A 8 408 59 HOH HOH . E 5 HOH A 9 409 121 HOH HOH . E 5 HOH A 10 410 132 HOH HOH . E 5 HOH A 11 411 128 HOH HOH . E 5 HOH A 12 412 74 HOH HOH . E 5 HOH A 13 413 31 HOH HOH . E 5 HOH A 14 414 2 HOH HOH . E 5 HOH A 15 415 71 HOH HOH . E 5 HOH A 16 416 54 HOH HOH . E 5 HOH A 17 417 48 HOH HOH . E 5 HOH A 18 418 105 HOH HOH . E 5 HOH A 19 419 6 HOH HOH . E 5 HOH A 20 420 32 HOH HOH . E 5 HOH A 21 421 120 HOH HOH . E 5 HOH A 22 422 141 HOH HOH . E 5 HOH A 23 423 66 HOH HOH . E 5 HOH A 24 424 107 HOH HOH . E 5 HOH A 25 425 87 HOH HOH . E 5 HOH A 26 426 84 HOH HOH . E 5 HOH A 27 427 51 HOH HOH . E 5 HOH A 28 428 46 HOH HOH . E 5 HOH A 29 429 125 HOH HOH . E 5 HOH A 30 430 34 HOH HOH . E 5 HOH A 31 431 101 HOH HOH . E 5 HOH A 32 432 27 HOH HOH . E 5 HOH A 33 433 47 HOH HOH . E 5 HOH A 34 434 22 HOH HOH . E 5 HOH A 35 435 144 HOH HOH . E 5 HOH A 36 436 86 HOH HOH . E 5 HOH A 37 437 110 HOH HOH . E 5 HOH A 38 438 124 HOH HOH . E 5 HOH A 39 439 90 HOH HOH . E 5 HOH A 40 440 127 HOH HOH . E 5 HOH A 41 441 25 HOH HOH . E 5 HOH A 42 442 13 HOH HOH . E 5 HOH A 43 443 79 HOH HOH . E 5 HOH A 44 444 4 HOH HOH . E 5 HOH A 45 445 39 HOH HOH . E 5 HOH A 46 446 91 HOH HOH . E 5 HOH A 47 447 11 HOH HOH . E 5 HOH A 48 448 78 HOH HOH . E 5 HOH A 49 449 55 HOH HOH . E 5 HOH A 50 450 30 HOH HOH . E 5 HOH A 51 451 3 HOH HOH . E 5 HOH A 52 452 109 HOH HOH . E 5 HOH A 53 453 14 HOH HOH . E 5 HOH A 54 454 126 HOH HOH . E 5 HOH A 55 455 10 HOH HOH . E 5 HOH A 56 456 36 HOH HOH . E 5 HOH A 57 457 64 HOH HOH . E 5 HOH A 58 458 49 HOH HOH . E 5 HOH A 59 459 15 HOH HOH . E 5 HOH A 60 460 114 HOH HOH . E 5 HOH A 61 461 43 HOH HOH . E 5 HOH A 62 462 23 HOH HOH . E 5 HOH A 63 463 85 HOH HOH . E 5 HOH A 64 464 9 HOH HOH . E 5 HOH A 65 465 12 HOH HOH . E 5 HOH A 66 466 75 HOH HOH . E 5 HOH A 67 467 113 HOH HOH . E 5 HOH A 68 468 41 HOH HOH . E 5 HOH A 69 469 62 HOH HOH . E 5 HOH A 70 470 7 HOH HOH . E 5 HOH A 71 471 119 HOH HOH . E 5 HOH A 72 472 20 HOH HOH . E 5 HOH A 73 473 45 HOH HOH . E 5 HOH A 74 474 108 HOH HOH . E 5 HOH A 75 475 60 HOH HOH . E 5 HOH A 76 476 73 HOH HOH . E 5 HOH A 77 477 58 HOH HOH . E 5 HOH A 78 478 29 HOH HOH . E 5 HOH A 79 479 112 HOH HOH . E 5 HOH A 80 480 52 HOH HOH . E 5 HOH A 81 481 17 HOH HOH . E 5 HOH A 82 482 63 HOH HOH . E 5 HOH A 83 483 21 HOH HOH . E 5 HOH A 84 484 70 HOH HOH . E 5 HOH A 85 485 118 HOH HOH . E 5 HOH A 86 486 57 HOH HOH . E 5 HOH A 87 487 61 HOH HOH . E 5 HOH A 88 488 123 HOH HOH . E 5 HOH A 89 489 76 HOH HOH . E 5 HOH A 90 490 50 HOH HOH . E 5 HOH A 91 491 16 HOH HOH . E 5 HOH A 92 492 83 HOH HOH . E 5 HOH A 93 493 72 HOH HOH . E 5 HOH A 94 494 129 HOH HOH . E 5 HOH A 95 495 44 HOH HOH . E 5 HOH A 96 496 102 HOH HOH . E 5 HOH A 97 497 1 HOH HOH . E 5 HOH A 98 498 137 HOH HOH . E 5 HOH A 99 499 133 HOH HOH . E 5 HOH A 100 500 5 HOH HOH . E 5 HOH A 101 501 135 HOH HOH . E 5 HOH A 102 502 92 HOH HOH . E 5 HOH A 103 503 100 HOH HOH . E 5 HOH A 104 504 37 HOH HOH . E 5 HOH A 105 505 95 HOH HOH . E 5 HOH A 106 506 136 HOH HOH . E 5 HOH A 107 507 28 HOH HOH . E 5 HOH A 108 508 117 HOH HOH . E 5 HOH A 109 509 93 HOH HOH . E 5 HOH A 110 510 35 HOH HOH . E 5 HOH A 111 511 103 HOH HOH . E 5 HOH A 112 512 19 HOH HOH . E 5 HOH A 113 513 106 HOH HOH . E 5 HOH A 114 514 94 HOH HOH . E 5 HOH A 115 515 97 HOH HOH . E 5 HOH A 116 516 115 HOH HOH . E 5 HOH A 117 517 131 HOH HOH . E 5 HOH A 118 518 42 HOH HOH . E 5 HOH A 119 519 88 HOH HOH . E 5 HOH A 120 520 68 HOH HOH . E 5 HOH A 121 521 56 HOH HOH . E 5 HOH A 122 522 139 HOH HOH . E 5 HOH A 123 523 138 HOH HOH . E 5 HOH A 124 524 140 HOH HOH . E 5 HOH A 125 525 99 HOH HOH . E 5 HOH A 126 526 130 HOH HOH . E 5 HOH A 127 527 77 HOH HOH . E 5 HOH A 128 528 122 HOH HOH . E 5 HOH A 129 529 142 HOH HOH . E 5 HOH A 130 530 134 HOH HOH . E 5 HOH A 131 531 24 HOH HOH . E 5 HOH A 132 532 53 HOH HOH . E 5 HOH A 133 533 67 HOH HOH . E 5 HOH A 134 534 143 HOH HOH . E 5 HOH A 135 535 26 HOH HOH . E 5 HOH A 136 536 33 HOH HOH . E 5 HOH A 137 537 69 HOH HOH . E 5 HOH A 138 538 40 HOH HOH . E 5 HOH A 139 539 98 HOH HOH . E 5 HOH A 140 540 89 HOH HOH . E 5 HOH A 141 541 96 HOH HOH . E 5 HOH A 142 542 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 JVH . A . D 4 -0.631 -1.351 -25.825 0.5 19.37 ? C2 JVH 303 A 1 HETATM 2 C C2 JVH . B . D 4 -2.465 -1.803 -24.455 0.5 16.46 ? C2 JVH 303 A 1 HETATM 3 C C4 JVH . A . D 4 -2.031 0.55 -25.432 0.5 15.02 ? C4 JVH 303 A 1 HETATM 4 C C4 JVH . B . D 4 -2.037 0.454 -25.396 0.5 14.96 ? C4 JVH 303 A 1 HETATM 5 C C5 JVH . . . D 4 -3.405 0.747 -25.961 1 14.22 ? C5 JVH 303 A 1 HETATM 6 C C8 JVH . . . D 4 -5.295 2.306 -26.074 1 16.22 ? C8 JVH 303 A 1 HETATM 7 C C11 JVH . . . D 4 -8.1 4.144 -24.362 1 13.24 ? C11 JVH 303 A 1 HETATM 8 C C12 JVH . . . D 4 -8.365 3.28 -23.282 1 13.34 ? C12 JVH 303 A 1 HETATM 9 N N13 JVH . . . D 4 -9.416 3.542 -22.367 1 12.97 ? N13 JVH 303 A 1 HETATM 10 C C16 JVH . . . D 4 -10.297 5.23 -23.939 1 12.7 ? C16 JVH 303 A 1 HETATM 11 C C17 JVH . . . D 4 -8.871 5.44 -24.522 1 14.85 ? C17 JVH 303 A 1 HETATM 12 C C21 JVH . . . D 4 -9.439 5.916 -21.682 1 15.15 ? C21 JVH 303 A 1 HETATM 13 C C24 JVH . . . D 4 -7.651 2.093 -23.161 1 12.51 ? C24 JVH 303 A 1 HETATM 14 C C30 JVH . A . D 4 -0.339 -2.708 -25.247 0.5 22.19 ? C30 JVH 303 A 1 HETATM 15 C C30 JVH . B . D 4 -2.121 -3.256 -24.713 0.5 19.91 ? C30 JVH 303 A 1 HETATM 16 C C32 JVH . A . D 4 -0.863 -3.859 -26.146 0.5 21.5 ? C32 JVH 303 A 1 HETATM 17 C C32 JVH . B . D 4 -1.319 -3.863 -23.518 0.5 18.79 ? C32 JVH 303 A 1 HETATM 18 C C34 JVH . A . D 4 -2.34 -3.942 -25.653 0.5 20.43 ? C34 JVH 303 A 1 HETATM 19 C C34 JVH . B . D 4 0.054 -3.133 -23.729 0.5 19.26 ? C34 JVH 303 A 1 HETATM 20 C C35 JVH . A . D 4 -2.056 -4.077 -24.139 0.5 20.38 ? C35 JVH 303 A 1 HETATM 21 C C35 JVH . B . D 4 0.246 -3.547 -25.232 0.5 21.49 ? C35 JVH 303 A 1 HETATM 22 C C37 JVH . A . D 4 -1.071 -5.296 -24.124 0.5 17.43 ? C37 JVH 303 A 1 HETATM 23 C C37 JVH . B . D 4 0.11 -5.082 -25.064 0.5 21.77 ? C37 JVH 303 A 1 HETATM 24 C C38 JVH . A . D 4 -0.25 -5.135 -25.485 0.5 21.23 ? C38 JVH 303 A 1 HETATM 25 C C38 JVH . B . D 4 -1.028 -5.32 -23.984 0.5 18.47 ? C38 JVH 303 A 1 HETATM 26 O O1 JVH . A . D 4 -0.173 -0.836 -26.807 0.5 22.92 ? O1 JVH 303 A 1 HETATM 27 O O1 JVH . B . D 4 -3.184 -1.392 -23.595 0.5 17.26 ? O1 JVH 303 A 1 HETATM 28 N N3 JVH . A . D 4 -1.573 -0.774 -25.102 0.5 16.02 ? N3 JVH 303 A 1 HETATM 29 N N3 JVH . B . D 4 -1.877 -0.991 -25.351 0.5 13.25 ? N3 JVH 303 A 1 HETATM 30 O O6 JVH . . . D 4 -3.891 -0.066 -26.743 1 17.45 ? O6 JVH 303 A 1 HETATM 31 N N7 JVH . . . D 4 -3.994 1.898 -25.591 1 15.46 ? N7 JVH 303 A 1 HETATM 32 C C9 JVH . . . D 4 -6.355 2.68 -25.078 1 15.49 ? C9 JVH 303 A 1 HETATM 33 C C10 JVH . . . D 4 -7.079 3.848 -25.238 1 14.62 ? C10 JVH 303 A 1 HETATM 34 C C14 JVH . . . D 4 -10.163 4.817 -22.46 1 14.52 ? C14 JVH 303 A 1 HETATM 35 O O19 JVH . . . D 4 -8.237 6.499 -23.739 1 18.75 ? O19 JVH 303 A 1 HETATM 36 C C20 JVH . . . D 4 -8.086 6.297 -22.321 1 16.11 ? C20 JVH 303 A 1 HETATM 37 O O23 JVH . . . D 4 -10.288 7.061 -21.644 1 17.5 ? O23 JVH 303 A 1 HETATM 38 C C25 JVH . . . D 4 -6.626 1.807 -24.039 1 12.55 ? C25 JVH 303 A 1 HETATM 39 C C26 JVH . A . D 4 -1.963 -1.486 -24.052 0.5 20.78 ? C26 JVH 303 A 1 HETATM 40 C C26 JVH . B . D 4 -1.094 -1.635 -26.204 0.5 20.65 ? C26 JVH 303 A 1 HETATM 41 O O27 JVH . A . D 4 -2.8 -1.111 -23.278 0.5 15.85 ? O27 JVH 303 A 1 HETATM 42 O O27 JVH . B . D 4 -0.493 -1.057 -27.081 0.5 21.42 ? O27 JVH 303 A 1 HETATM 43 C C28 JVH . A . D 4 -1.208 -2.802 -23.937 0.5 22.27 ? C28 JVH 303 A 1 HETATM 44 C C28 JVH . B . D 4 -1.105 -3.126 -25.891 0.5 20.46 ? C28 JVH 303 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #