data_6RA1 # _model_server_result.job_id cfK0CHjHk1hQV3lucy7E1g _model_server_result.datetime_utc '2024-11-08 09:56:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ra1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6RA1 # _exptl.entry_id 6RA1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 223.225 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[(1~{R},2~{R},6~{S},7~{S})-3,5-bis(oxidanylidene)-4-azatricyclo[5.2.1.0^{2,6}]decan-4-yl]ethanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RA1 _cell.length_a 56.889 _cell.length_b 56.889 _cell.length_c 116.147 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RA1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H13 N O4' _chem_comp.formula_weight 223.225 _chem_comp.id JWB _chem_comp.mon_nstd_flag . _chem_comp.name '2-[(1~{R},2~{R},6~{S},7~{S})-3,5-bis(oxidanylidene)-4-azatricyclo[5.2.1.0^{2,6}]decan-4-yl]ethanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O7 C6 JWB doub 209 n n O1 C2 JWB doub 210 n n O3 C2 JWB sing 211 n n C2 C4 JWB sing 212 n n C6 C8 JWB sing 213 n n C6 N5 JWB sing 214 n n C4 N5 JWB sing 215 n n C8 C9 JWB sing 216 n n C8 C14 JWB sing 217 n n N5 C15 JWB sing 218 n n C9 C10 JWB sing 219 n n C9 C13 JWB sing 220 n n C10 C11 JWB sing 221 n n C15 C14 JWB sing 222 n n C15 O16 JWB doub 223 n n C14 C12 JWB sing 224 n n C13 C12 JWB sing 225 n n C11 C12 JWB sing 226 n n C4 H1 JWB sing 227 n n C4 H2 JWB sing 228 n n C8 H3 JWB sing 229 n n C11 H4 JWB sing 230 n n C11 H5 JWB sing 231 n n C12 H6 JWB sing 232 n n O3 H7 JWB sing 233 n n C9 H8 JWB sing 234 n n C10 H9 JWB sing 235 n n C10 H10 JWB sing 236 n n C13 H11 JWB sing 237 n n C13 H12 JWB sing 238 n n C14 H13 JWB sing 239 n n # _atom_sites.entry_id 6RA1 _atom_sites.fract_transf_matrix[1][1] 0.017578 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017578 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00861 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JWB A 1 301 1 JWB INX . C 3 JVQ A 1 302 1 JVQ INY . D 4 PEG A 1 303 1 PEG PEG . E 5 PG4 A 1 304 2 PG4 PG4 . F 6 SO4 A 1 305 3 SO4 SO4 . G 6 SO4 A 1 306 4 SO4 SO4 . H 7 HOH A 1 401 55 HOH HOH . H 7 HOH A 2 402 7 HOH HOH . H 7 HOH A 3 403 5 HOH HOH . H 7 HOH A 4 404 15 HOH HOH . H 7 HOH A 5 405 27 HOH HOH . H 7 HOH A 6 406 4 HOH HOH . H 7 HOH A 7 407 66 HOH HOH . H 7 HOH A 8 408 69 HOH HOH . H 7 HOH A 9 409 40 HOH HOH . H 7 HOH A 10 410 41 HOH HOH . H 7 HOH A 11 411 68 HOH HOH . H 7 HOH A 12 412 8 HOH HOH . H 7 HOH A 13 413 44 HOH HOH . H 7 HOH A 14 414 51 HOH HOH . H 7 HOH A 15 415 78 HOH HOH . H 7 HOH A 16 416 25 HOH HOH . H 7 HOH A 17 417 12 HOH HOH . H 7 HOH A 18 418 34 HOH HOH . H 7 HOH A 19 419 10 HOH HOH . H 7 HOH A 20 420 67 HOH HOH . H 7 HOH A 21 421 72 HOH HOH . H 7 HOH A 22 422 59 HOH HOH . H 7 HOH A 23 423 54 HOH HOH . H 7 HOH A 24 424 52 HOH HOH . H 7 HOH A 25 425 49 HOH HOH . H 7 HOH A 26 426 35 HOH HOH . H 7 HOH A 27 427 20 HOH HOH . H 7 HOH A 28 428 50 HOH HOH . H 7 HOH A 29 429 2 HOH HOH . H 7 HOH A 30 430 13 HOH HOH . H 7 HOH A 31 431 3 HOH HOH . H 7 HOH A 32 432 64 HOH HOH . H 7 HOH A 33 433 26 HOH HOH . H 7 HOH A 34 434 9 HOH HOH . H 7 HOH A 35 435 21 HOH HOH . H 7 HOH A 36 436 70 HOH HOH . H 7 HOH A 37 437 30 HOH HOH . H 7 HOH A 38 438 37 HOH HOH . H 7 HOH A 39 439 38 HOH HOH . H 7 HOH A 40 440 73 HOH HOH . H 7 HOH A 41 441 16 HOH HOH . H 7 HOH A 42 442 65 HOH HOH . H 7 HOH A 43 443 33 HOH HOH . H 7 HOH A 44 444 63 HOH HOH . H 7 HOH A 45 445 48 HOH HOH . H 7 HOH A 46 446 31 HOH HOH . H 7 HOH A 47 447 18 HOH HOH . H 7 HOH A 48 448 14 HOH HOH . H 7 HOH A 49 449 76 HOH HOH . H 7 HOH A 50 450 28 HOH HOH . H 7 HOH A 51 451 61 HOH HOH . H 7 HOH A 52 452 71 HOH HOH . H 7 HOH A 53 453 24 HOH HOH . H 7 HOH A 54 454 22 HOH HOH . H 7 HOH A 55 455 17 HOH HOH . H 7 HOH A 56 456 6 HOH HOH . H 7 HOH A 57 457 1 HOH HOH . H 7 HOH A 58 458 11 HOH HOH . H 7 HOH A 59 459 19 HOH HOH . H 7 HOH A 60 460 39 HOH HOH . H 7 HOH A 61 461 80 HOH HOH . H 7 HOH A 62 462 29 HOH HOH . H 7 HOH A 63 463 42 HOH HOH . H 7 HOH A 64 464 36 HOH HOH . H 7 HOH A 65 465 58 HOH HOH . H 7 HOH A 66 466 23 HOH HOH . H 7 HOH A 67 467 81 HOH HOH . H 7 HOH A 68 468 46 HOH HOH . H 7 HOH A 69 469 77 HOH HOH . H 7 HOH A 70 470 74 HOH HOH . H 7 HOH A 71 471 57 HOH HOH . H 7 HOH A 72 472 75 HOH HOH . H 7 HOH A 73 473 45 HOH HOH . H 7 HOH A 74 474 56 HOH HOH . H 7 HOH A 75 475 32 HOH HOH . H 7 HOH A 76 476 62 HOH HOH . H 7 HOH A 77 477 53 HOH HOH . H 7 HOH A 78 478 43 HOH HOH . H 7 HOH A 79 479 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 JWB . . . B 2 -2.696 0.112 -26.676 1 33.46 ? C2 JWB 301 A 1 HETATM 2 C C4 JWB . . . B 2 -1.588 -0.475 -25.86 1 30.69 ? C4 JWB 301 A 1 HETATM 3 C C6 JWB . . . B 2 -1.461 -2.895 -26.413 1 25.55 ? C6 JWB 301 A 1 HETATM 4 C C8 JWB . . . B 2 -1.757 -4.234 -25.769 1 23.95 ? C8 JWB 301 A 1 HETATM 5 C C11 JWB . . . B 2 0.102 -3.707 -23.392 1 21.61 ? C11 JWB 301 A 1 HETATM 6 C C12 JWB . . . B 2 -1.291 -4.434 -23.361 1 21.74 ? C12 JWB 301 A 1 HETATM 7 C C15 JWB . . . B 2 -2.33 -2.337 -24.404 1 24.06 ? C15 JWB 301 A 1 HETATM 8 O O1 JWB . . . B 2 -2.54 1.335 -27.203 1 34.94 ? O1 JWB 301 A 1 HETATM 9 O O3 JWB . . . B 2 -3.703 -0.523 -26.855 1 34.31 ? O3 JWB 301 A 1 HETATM 10 N N5 JWB . . . B 2 -1.803 -1.903 -25.567 1 27.34 ? N5 JWB 301 A 1 HETATM 11 O O7 JWB . . . B 2 -0.997 -2.767 -27.525 1 24.83 ? O7 JWB 301 A 1 HETATM 12 C C9 JWB . . . B 2 -0.424 -5 -25.417 1 23.41 ? C9 JWB 301 A 1 HETATM 13 C C10 JWB . . . B 2 0.652 -4.028 -24.811 1 21.96 ? C10 JWB 301 A 1 HETATM 14 C C13 JWB . . . B 2 -0.879 -5.748 -24.116 1 22.16 ? C13 JWB 301 A 1 HETATM 15 C C14 JWB . . . B 2 -2.352 -3.855 -24.386 1 22.7 ? C14 JWB 301 A 1 HETATM 16 O O16 JWB . . . B 2 -2.733 -1.643 -23.5 1 21.21 ? O16 JWB 301 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #