data_6RA6 # _model_server_result.job_id HgVz5DB4RJ9Yfrt-DAUX_A _model_server_result.datetime_utc '2024-11-28 12:03:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ra6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 6RA6 # _exptl.entry_id 6RA6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6RA6 _cell.length_a 74.587 _cell.length_b 74.587 _cell.length_c 77.091 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RA6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 64 A HIS 63 1_555 B FE HEM . A HEM 201 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.991 ? metalc ? metalc2 A NE2 HIS 64 A HIS 63 1_555 B FE HEM . A HEM 201 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.138 ? metalc ? metalc3 A NE2 HIS 96 A HIS 95 1_555 B FE HEM . A HEM 201 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.106 ? metalc ? metalc4 A NE2 HIS 96 A HIS 95 1_555 B FE HEM . A HEM 201 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.942 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6RA6 _atom_sites.fract_transf_matrix[1][1] 0.013407 _atom_sites.fract_transf_matrix[1][2] 0.007741 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015481 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012972 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 201 200 HEM HEM . C 3 SO4 A 1 202 1 SO4 SO4 . D 4 TRS A 1 203 2 TRS TRS . E 5 PEG A 1 204 3 PEG PEG . F 6 GOL A 1 205 4 GOL GOL . G 6 GOL A 1 206 5 GOL GOL . H 5 PEG A 1 207 6 PEG PEG . I 5 PEG A 1 208 7 PEG PEG . J 7 HOH A 1 301 33 HOH HOH . J 7 HOH A 2 302 58 HOH HOH . J 7 HOH A 3 303 37 HOH HOH . J 7 HOH A 4 304 41 HOH HOH . J 7 HOH A 5 305 69 HOH HOH . J 7 HOH A 6 306 49 HOH HOH . J 7 HOH A 7 307 4 HOH HOH . J 7 HOH A 8 308 2 HOH HOH . J 7 HOH A 9 309 16 HOH HOH . J 7 HOH A 10 310 15 HOH HOH . J 7 HOH A 11 311 63 HOH HOH . J 7 HOH A 12 312 6 HOH HOH . J 7 HOH A 13 313 18 HOH HOH . J 7 HOH A 14 314 1 HOH HOH . J 7 HOH A 15 315 11 HOH HOH . J 7 HOH A 16 316 24 HOH HOH . J 7 HOH A 17 317 66 HOH HOH . J 7 HOH A 18 318 14 HOH HOH . J 7 HOH A 19 319 65 HOH HOH . J 7 HOH A 20 320 39 HOH HOH . J 7 HOH A 21 321 70 HOH HOH . J 7 HOH A 22 322 43 HOH HOH . J 7 HOH A 23 323 10 HOH HOH . J 7 HOH A 24 324 26 HOH HOH . J 7 HOH A 25 325 29 HOH HOH . J 7 HOH A 26 326 9 HOH HOH . J 7 HOH A 27 327 62 HOH HOH . J 7 HOH A 28 328 7 HOH HOH . J 7 HOH A 29 329 17 HOH HOH . J 7 HOH A 30 330 28 HOH HOH . J 7 HOH A 31 331 50 HOH HOH . J 7 HOH A 32 332 53 HOH HOH . J 7 HOH A 33 333 40 HOH HOH . J 7 HOH A 34 334 42 HOH HOH . J 7 HOH A 35 335 12 HOH HOH . J 7 HOH A 36 336 71 HOH HOH . J 7 HOH A 37 337 35 HOH HOH . J 7 HOH A 38 338 72 HOH HOH . J 7 HOH A 39 339 3 HOH HOH . J 7 HOH A 40 340 8 HOH HOH . J 7 HOH A 41 341 55 HOH HOH . J 7 HOH A 42 342 60 HOH HOH . J 7 HOH A 43 343 45 HOH HOH . J 7 HOH A 44 344 19 HOH HOH . J 7 HOH A 45 345 13 HOH HOH . J 7 HOH A 46 346 21 HOH HOH . J 7 HOH A 47 347 48 HOH HOH . J 7 HOH A 48 348 23 HOH HOH . J 7 HOH A 49 349 22 HOH HOH . J 7 HOH A 50 350 68 HOH HOH . J 7 HOH A 51 351 34 HOH HOH . J 7 HOH A 52 352 44 HOH HOH . J 7 HOH A 53 353 31 HOH HOH . J 7 HOH A 54 354 64 HOH HOH . J 7 HOH A 55 355 25 HOH HOH . J 7 HOH A 56 356 36 HOH HOH . J 7 HOH A 57 357 46 HOH HOH . J 7 HOH A 58 358 67 HOH HOH . J 7 HOH A 59 359 61 HOH HOH . J 7 HOH A 60 360 5 HOH HOH . J 7 HOH A 61 361 73 HOH HOH . J 7 HOH A 62 362 57 HOH HOH . J 7 HOH A 63 363 30 HOH HOH . J 7 HOH A 64 364 59 HOH HOH . J 7 HOH A 65 365 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 6 -41.18 -9.346 13.617 1 109.3 ? C1 GOL 205 A 1 HETATM 2 O O1 GOL . . . F 6 -42.197 -9.838 14.493 1 103.72 ? O1 GOL 205 A 1 HETATM 3 C C2 GOL . . . F 6 -39.852 -10.051 13.839 1 102.21 ? C2 GOL 205 A 1 HETATM 4 O O2 GOL . . . F 6 -39.098 -9.356 14.831 1 108.31 ? O2 GOL 205 A 1 HETATM 5 C C3 GOL . . . F 6 -39.01 -10.197 12.588 1 96.27 ? C3 GOL 205 A 1 HETATM 6 O O3 GOL . . . F 6 -37.981 -11.17 12.762 1 88.76 ? O3 GOL 205 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #