data_6RAG # _model_server_result.job_id BdFUqYk3YcjyJYxERLHVDA _model_server_result.datetime_utc '2024-11-21 13:57:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rag # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":602}' # _entry.id 6RAG # _exptl.entry_id 6RAG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RAG _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RAG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 C SG CYS 24 C CYS 22 1_555 C SG CYS 98 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 C SG CYS 52 C CYS 50 1_555 C SG CYS 110 C CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc1 A OG1 THR 400 A THR 400 1_555 D MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? metalc ? metalc2 A OD2 ASP 522 A ASP 522 1_555 D MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? metalc ? metalc3 D MG MG . A MG 701 1_555 E O2B ADP . A ADP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc4 B OG SER 378 B SER 378 1_555 F MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc5 B OE1 GLN 419 B GLN 419 1_555 F MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc6 F MG MG . B MG 601 1_555 G O1G ATP . B ATP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? metalc ? metalc7 F MG MG . B MG 601 1_555 G O1B ATP . B ATP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.911 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 6RAG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG A 1 701 1 MG MG . E 5 ADP A 1 702 1 ADP ADP . F 4 MG B 1 601 2 MG MG . G 6 ATP B 1 602 1 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . G 6 150.197 129.857 99.929 1 133.8 ? PG ATP 602 B 1 HETATM 2 O O1G ATP . . . G 6 150.812 131.197 99.623 1 133.8 ? O1G ATP 602 B 1 HETATM 3 O O2G ATP . . . G 6 149.496 129.238 98.751 1 133.8 ? O2G ATP 602 B 1 HETATM 4 O O3G ATP . . . G 6 149.427 129.824 101.219 1 133.8 ? O3G ATP 602 B 1 HETATM 5 P PB ATP . . . G 6 152.64 129.315 101.137 1 133.8 ? PB ATP 602 B 1 HETATM 6 O O1B ATP . . . G 6 153.418 130.329 100.355 1 133.8 ? O1B ATP 602 B 1 HETATM 7 O O2B ATP . . . G 6 152.115 129.654 102.503 1 133.8 ? O2B ATP 602 B 1 HETATM 8 O O3B ATP . . . G 6 151.42 128.851 100.209 1 133.8 ? O3B ATP 602 B 1 HETATM 9 P PA ATP . . . G 6 154.976 128.155 102.021 1 133.8 ? PA ATP 602 B 1 HETATM 10 O O1A ATP . . . G 6 156.031 127.558 101.141 1 133.8 ? O1A ATP 602 B 1 HETATM 11 O O2A ATP . . . G 6 155.131 129.568 102.511 1 133.8 ? O2A ATP 602 B 1 HETATM 12 O O3A ATP . . . G 6 153.568 128.018 101.262 1 133.8 ? O3A ATP 602 B 1 HETATM 13 O O5' ATP . . . G 6 154.861 127.214 103.306 1 133.8 ? O5' ATP 602 B 1 HETATM 14 C C5' ATP . . . G 6 154.09 127.671 104.404 1 133.8 ? C5' ATP 602 B 1 HETATM 15 C C4' ATP . . . G 6 154.114 126.608 105.488 1 133.8 ? C4' ATP 602 B 1 HETATM 16 O O4' ATP . . . G 6 155.364 126.632 106.176 1 133.8 ? O4' ATP 602 B 1 HETATM 17 C C3' ATP . . . G 6 153.029 126.859 106.524 1 133.8 ? C3' ATP 602 B 1 HETATM 18 O O3' ATP . . . G 6 151.937 125.951 106.355 1 133.8 ? O3' ATP 602 B 1 HETATM 19 C C2' ATP . . . G 6 153.69 126.614 107.857 1 133.8 ? C2' ATP 602 B 1 HETATM 20 O O2' ATP . . . G 6 153.055 125.516 108.51 1 133.8 ? O2' ATP 602 B 1 HETATM 21 C C1' ATP . . . G 6 155.133 126.275 107.535 1 133.8 ? C1' ATP 602 B 1 HETATM 22 N N9 ATP . . . G 6 155.957 127.065 108.463 1 133.8 ? N9 ATP 602 B 1 HETATM 23 C C8 ATP . . . G 6 156.002 128.403 108.537 1 133.8 ? C8 ATP 602 B 1 HETATM 24 N N7 ATP . . . G 6 156.847 128.801 109.518 1 133.8 ? N7 ATP 602 B 1 HETATM 25 C C5 ATP . . . G 6 157.342 127.694 110.093 1 133.8 ? C5 ATP 602 B 1 HETATM 26 C C6 ATP . . . G 6 158.284 127.39 111.185 1 133.8 ? C6 ATP 602 B 1 HETATM 27 N N6 ATP . . . G 6 158.876 128.386 111.879 1 133.8 ? N6 ATP 602 B 1 HETATM 28 N N1 ATP . . . G 6 158.526 126.092 111.467 1 133.8 ? N1 ATP 602 B 1 HETATM 29 C C2 ATP . . . G 6 157.944 125.094 110.782 1 133.8 ? C2 ATP 602 B 1 HETATM 30 N N3 ATP . . . G 6 157.078 125.298 109.778 1 133.8 ? N3 ATP 602 B 1 HETATM 31 C C4 ATP . . . G 6 156.745 126.552 109.398 1 133.8 ? C4 ATP 602 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #