data_6RAH
#
_model_server_result.job_id            mgFc9_pzW8d_77D4eIRMVQ 
_model_server_result.datetime_utc      '2024-11-21 13:39:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6rah 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":701}' 
#
_entry.id    6RAH 
#
_exptl.entry_id    6RAH 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6RAH 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6RAH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 C SG CYS 24 C CYS 22 1_555 C SG CYS 98 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 C SG CYS 52 C CYS 50 1_555 C SG CYS 110 C CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
metalc ? metalc1 A OG1 THR 400 A THR 400 1_555 E MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
metalc ? metalc2 A OE1 GLN 441 A GLN 441 1_555 E MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? 
metalc ? metalc3 D O2G ATP . A ATP 701 1_555 E MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
metalc ? metalc4 D O2B ATP . A ATP 701 1_555 E MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? 
metalc ? metalc5 E MG MG . A MG 702 1_555 H O HOH . A HOH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? 
metalc ? metalc6 E MG MG . A MG 702 1_555 H O HOH . A HOH 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
metalc ? metalc7 B OG SER 378 B SER 378 1_555 G MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? 
metalc ? metalc8 B OE1 GLN 419 B GLN 419 1_555 G MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? 
metalc ? metalc9 F O3G ATP . B ATP 601 1_555 G MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? 
metalc ? metalc10 F O2B ATP . B ATP 601 1_555 G MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? 
metalc ? metalc11 G MG MG . B MG 602 1_555 I O HOH . B HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? 
metalc ? metalc12 G MG MG . B MG 602 1_555 I O HOH . B HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     6RAH 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 ATP A 1 701 1 ATP ATP . 
E 5 MG A 1 702 1 MG MG . 
F 4 ATP B 1 601 2 ATP ATP . 
G 5 MG B 1 602 2 MG MG . 
H 6 HOH A 1 801 2 HOH HOH . 
H 6 HOH A 2 802 1 HOH HOH . 
I 6 HOH B 1 701 3 HOH HOH . 
I 6 HOH B 2 702 4 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . D 4 129.621 131.426 95.322 1 49.17 ? PG ATP 701 A 1 
HETATM 2 O O1G ATP . . . D 4 130.458 132.548 94.776 1 49.17 ? O1G ATP 701 A 1 
HETATM 3 O O2G ATP . . . D 4 130.179 130.747 96.542 1 49.17 ? O2G ATP 701 A 1 
HETATM 4 O O3G ATP . . . D 4 129.103 130.482 94.273 1 49.17 ? O3G ATP 701 A 1 
HETATM 5 P PB ATP . . . D 4 126.927 131.385 96.06 1 49.17 ? PB ATP 701 A 1 
HETATM 6 O O1B ATP . . . D 4 126.292 131.166 94.716 1 49.17 ? O1B ATP 701 A 1 
HETATM 7 O O2B ATP . . . D 4 127.223 130.21 96.944 1 49.17 ? O2B ATP 701 A 1 
HETATM 8 O O3B ATP . . . D 4 128.307 132.177 95.853 1 49.17 ? O3B ATP 701 A 1 
HETATM 9 P PA ATP . . . D 4 125.237 132.121 98.215 1 49.17 ? PA ATP 701 A 1 
HETATM 10 O O1A ATP . . . D 4 124.57 130.783 98.087 1 49.17 ? O1A ATP 701 A 1 
HETATM 11 O O2A ATP . . . D 4 126.171 132.357 99.366 1 49.17 ? O2A ATP 701 A 1 
HETATM 12 O O3A ATP . . . D 4 126.029 132.456 96.857 1 49.17 ? O3A ATP 701 A 1 
HETATM 13 O O5' ATP . . . D 4 124.106 133.26 98.235 1 49.17 ? O5' ATP 701 A 1 
HETATM 14 C C5' ATP . . . D 4 124.286 134.442 97.462 1 49.17 ? C5' ATP 701 A 1 
HETATM 15 C C4' ATP . . . D 4 123.759 135.655 98.21 1 49.17 ? C4' ATP 701 A 1 
HETATM 16 O O4' ATP . . . D 4 123.353 135.271 99.518 1 49.17 ? O4' ATP 701 A 1 
HETATM 17 C C3' ATP . . . D 4 124.841 136.705 98.367 1 49.17 ? C3' ATP 701 A 1 
HETATM 18 O O3' ATP . . . D 4 124.405 137.914 97.749 1 49.17 ? O3' ATP 701 A 1 
HETATM 19 C C2' ATP . . . D 4 125.009 136.918 99.855 1 49.17 ? C2' ATP 701 A 1 
HETATM 20 O O2' ATP . . . D 4 124.937 138.311 100.158 1 49.17 ? O2' ATP 701 A 1 
HETATM 21 C C1' ATP . . . D 4 123.85 136.184 100.493 1 49.17 ? C1' ATP 701 A 1 
HETATM 22 N N9 ATP . . . D 4 124.286 135.407 101.674 1 49.17 ? N9 ATP 701 A 1 
HETATM 23 C C8 ATP . . . D 4 124.959 134.25 101.628 1 49.17 ? C8 ATP 701 A 1 
HETATM 24 N N7 ATP . . . D 4 125.205 133.774 102.869 1 49.17 ? N7 ATP 701 A 1 
HETATM 25 C C5 ATP . . . D 4 124.673 134.643 103.74 1 49.17 ? C5 ATP 701 A 1 
HETATM 26 C C6 ATP . . . D 4 124.57 134.746 105.21 1 49.17 ? C6 ATP 701 A 1 
HETATM 27 N N6 ATP . . . D 4 125.104 133.795 106.008 1 49.17 ? N6 ATP 701 A 1 
HETATM 28 N N1 ATP . . . D 4 123.929 135.816 105.722 1 49.17 ? N1 ATP 701 A 1 
HETATM 29 C C2 ATP . . . D 4 123.4 136.768 104.935 1 49.17 ? C2 ATP 701 A 1 
HETATM 30 N N3 ATP . . . D 4 123.452 136.735 103.595 1 49.17 ? N3 ATP 701 A 1 
HETATM 31 C C4 ATP . . . D 4 124.063 135.716 102.949 1 49.17 ? C4 ATP 701 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           31 
#