data_6RAI # _model_server_result.job_id KpwRai6YNLRnohrwNUQk5A _model_server_result.datetime_utc '2024-11-04 23:14:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rai # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":701}' # _entry.id 6RAI # _exptl.entry_id 6RAI _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RAI _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RAI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 C SG CYS 24 C CYS 22 1_555 C SG CYS 98 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 C SG CYS 52 C CYS 50 1_555 C SG CYS 110 C CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc1 A OG1 THR 400 A THR 400 1_555 E MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc2 A OE1 GLN 441 A GLN 441 1_555 E MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc3 B OG SER 378 B SER 378 1_555 G MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc4 B OE1 GLN 419 B GLN 419 1_555 G MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc5 D O2G ATP . A ATP 701 1_555 E MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc6 D O3B ATP . A ATP 701 1_555 E MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc7 E MG MG . A MG 702 1_555 H O HOH . A HOH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc8 E MG MG . A MG 702 1_555 H O HOH . A HOH 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? metalc ? metalc9 F O2G ATP . B ATP 601 1_555 G MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc10 F O2B ATP . B ATP 601 1_555 G MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc11 G MG MG . B MG 602 1_555 I O HOH . B HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc12 G MG MG . B MG 602 1_555 I O HOH . B HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6RAI _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ATP A 1 701 1 ATP ATP . E 5 MG A 1 702 1 MG MG . F 4 ATP B 1 601 2 ATP ATP . G 5 MG B 1 602 2 MG MG . H 6 HOH A 1 801 6 HOH HOH . H 6 HOH A 2 802 5 HOH HOH . H 6 HOH A 3 803 2 HOH HOH . H 6 HOH A 4 804 1 HOH HOH . I 6 HOH B 1 701 3 HOH HOH . I 6 HOH B 2 702 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . D 4 130.209 130.88 95.853 1 40.04 ? PG ATP 701 A 1 HETATM 2 O O1G ATP . . . D 4 130.318 132.376 95.86 1 40.04 ? O1G ATP 701 A 1 HETATM 3 O O2G ATP . . . D 4 131.353 130.2 96.544 1 40.04 ? O2G ATP 701 A 1 HETATM 4 O O3G ATP . . . D 4 129.904 130.317 94.498 1 40.04 ? O3G ATP 701 A 1 HETATM 5 P PB ATP . . . D 4 127.468 131.056 96.418 1 40.04 ? PB ATP 701 A 1 HETATM 6 O O1B ATP . . . D 4 127.56 132.54 96.467 1 40.04 ? O1B ATP 701 A 1 HETATM 7 O O2B ATP . . . D 4 127.017 130.373 95.164 1 40.04 ? O2B ATP 701 A 1 HETATM 8 O O3B ATP . . . D 4 128.93 130.479 96.751 1 40.04 ? O3B ATP 701 A 1 HETATM 9 P PA ATP . . . D 4 125.987 131.39 98.886 1 40.04 ? PA ATP 701 A 1 HETATM 10 O O1A ATP . . . D 4 124.682 130.79 99.281 1 40.04 ? O1A ATP 701 A 1 HETATM 11 O O2A ATP . . . D 4 127.084 131.407 99.91 1 40.04 ? O2A ATP 701 A 1 HETATM 12 O O3A ATP . . . D 4 126.492 130.561 97.594 1 40.04 ? O3A ATP 701 A 1 HETATM 13 O O5' ATP . . . D 4 125.595 132.885 98.481 1 40.04 ? O5' ATP 701 A 1 HETATM 14 C C5' ATP . . . D 4 124.219 133.261 98.421 1 40.04 ? C5' ATP 701 A 1 HETATM 15 C C4' ATP . . . D 4 124.002 134.701 98.871 1 40.04 ? C4' ATP 701 A 1 HETATM 16 O O4' ATP . . . D 4 123.622 134.734 100.241 1 40.04 ? O4' ATP 701 A 1 HETATM 17 C C3' ATP . . . D 4 125.25 135.546 98.745 1 40.04 ? C3' ATP 701 A 1 HETATM 18 O O3' ATP . . . D 4 124.96 136.695 97.951 1 40.04 ? O3' ATP 701 A 1 HETATM 19 C C2' ATP . . . D 4 125.61 135.994 100.14 1 40.04 ? C2' ATP 701 A 1 HETATM 20 O O2' ATP . . . D 4 125.836 137.4 100.139 1 40.04 ? O2' ATP 701 A 1 HETATM 21 C C1' ATP . . . D 4 124.405 135.664 100.983 1 40.04 ? C1' ATP 701 A 1 HETATM 22 N N9 ATP . . . D 4 124.807 134.994 102.235 1 40.04 ? N9 ATP 701 A 1 HETATM 23 C C8 ATP . . . D 4 125.509 133.855 102.314 1 40.04 ? C8 ATP 701 A 1 HETATM 24 N N7 ATP . . . D 4 125.706 133.489 103.597 1 40.04 ? N7 ATP 701 A 1 HETATM 25 C C5 ATP . . . D 4 125.108 134.413 104.362 1 40.04 ? C5 ATP 701 A 1 HETATM 26 C C6 ATP . . . D 4 124.934 134.628 105.807 1 40.04 ? C6 ATP 701 A 1 HETATM 27 N N6 ATP . . . D 4 125.457 133.755 106.691 1 40.04 ? N6 ATP 701 A 1 HETATM 28 N N1 ATP . . . D 4 124.248 135.713 106.206 1 40.04 ? N1 ATP 701 A 1 HETATM 29 C C2 ATP . . . D 4 123.735 136.583 105.323 1 40.04 ? C2 ATP 701 A 1 HETATM 30 N N3 ATP . . . D 4 123.852 136.449 103.994 1 40.04 ? N3 ATP 701 A 1 HETATM 31 C C4 ATP . . . D 4 124.515 135.399 103.463 1 40.04 ? C4 ATP 701 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #