data_6RAK
#
_model_server_result.job_id            hzUaTHaKWMhnOIvXTec4Lg 
_model_server_result.datetime_utc      '2025-07-17 03:56:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6rak 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":601}' 
#
_entry.id    6RAK 
#
_exptl.entry_id    6RAK 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6RAK 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6RAK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 C SG CYS 24 C CYS 22 1_555 C SG CYS 98 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 C SG CYS 52 C CYS 50 1_555 C SG CYS 110 C CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
metalc ? metalc1 A OG1 THR 400 A THR 400 1_555 E MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc2 A OE1 GLN 441 A GLN 441 1_555 E MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? 
metalc ? metalc3 D O2B AOV . A AOV 701 1_555 E MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? 
metalc ? metalc4 D O3G AOV . A AOV 701 1_555 E MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? 
metalc ? metalc5 B OG SER 378 B SER 378 1_555 G MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? 
metalc ? metalc6 B OE1 GLN 419 B GLN 419 1_555 G MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? 
metalc ? metalc7 F O2G ATP . B ATP 601 1_555 G MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? 
metalc ? metalc8 F O3B ATP . B ATP 601 1_555 G MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 121 n n 
PG O2G ATP sing 122 n n 
PG O3G ATP sing 123 n n 
PG O3B ATP sing 124 n n 
O2G HOG2 ATP sing 125 n n 
O3G HOG3 ATP sing 126 n n 
PB O1B ATP doub 127 n n 
PB O2B ATP sing 128 n n 
PB O3B ATP sing 129 n n 
PB O3A ATP sing 130 n n 
O2B HOB2 ATP sing 131 n n 
PA O1A ATP doub 132 n n 
PA O2A ATP sing 133 n n 
PA O3A ATP sing 134 n n 
PA O5' ATP sing 135 n n 
O2A HOA2 ATP sing 136 n n 
O5' C5' ATP sing 137 n n 
C5' C4' ATP sing 138 n n 
C5' "H5'1" ATP sing 139 n n 
C5' "H5'2" ATP sing 140 n n 
C4' O4' ATP sing 141 n n 
C4' C3' ATP sing 142 n n 
C4' H4' ATP sing 143 n n 
O4' C1' ATP sing 144 n n 
C3' O3' ATP sing 145 n n 
C3' C2' ATP sing 146 n n 
C3' H3' ATP sing 147 n n 
O3' HO3' ATP sing 148 n n 
C2' O2' ATP sing 149 n n 
C2' C1' ATP sing 150 n n 
C2' H2' ATP sing 151 n n 
O2' HO2' ATP sing 152 n n 
C1' N9 ATP sing 153 n n 
C1' H1' ATP sing 154 n n 
N9 C8 ATP sing 155 n y 
N9 C4 ATP sing 156 n y 
C8 N7 ATP doub 157 n y 
C8 H8 ATP sing 158 n n 
N7 C5 ATP sing 159 n y 
C5 C6 ATP sing 160 n y 
C5 C4 ATP doub 161 n y 
C6 N6 ATP sing 162 n n 
C6 N1 ATP doub 163 n y 
N6 HN61 ATP sing 164 n n 
N6 HN62 ATP sing 165 n n 
N1 C2 ATP sing 166 n y 
C2 N3 ATP doub 167 n y 
C2 H2 ATP sing 168 n n 
N3 C4 ATP sing 169 n y 
#
_atom_sites.entry_id                     6RAK 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 AOV A 1 701 1 AOV AOV . 
E 5 MG A 1 702 1 MG MG . 
F 6 ATP B 1 601 1 ATP ATP . 
G 5 MG B 1 602 2 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . F 6 149.173 126.124 98.682 1 26.58 ? PG ATP 601 B 1 
HETATM 2 O O1G ATP . . . F 6 148.51 125.176 99.641 1 26.58 ? O1G ATP 601 B 1 
HETATM 3 O O2G ATP . . . F 6 148.325 127.308 98.298 1 26.58 ? O2G ATP 601 B 1 
HETATM 4 O O3G ATP . . . F 6 149.835 125.428 97.525 1 26.58 ? O3G ATP 601 B 1 
HETATM 5 P PB ATP . . . F 6 151.706 125.904 99.824 1 26.58 ? PB ATP 601 B 1 
HETATM 6 O O1B ATP . . . F 6 151.248 124.639 100.484 1 26.58 ? O1B ATP 601 B 1 
HETATM 7 O O2B ATP . . . F 6 152.529 125.824 98.564 1 26.58 ? O2B ATP 601 B 1 
HETATM 8 O O3B ATP . . . F 6 150.395 126.776 99.502 1 26.58 ? O3B ATP 601 B 1 
HETATM 9 P PA ATP . . . F 6 152.093 126.842 102.443 1 26.58 ? PA ATP 601 B 1 
HETATM 10 O O1A ATP . . . F 6 152.767 128.031 103.075 1 26.58 ? O1A ATP 601 B 1 
HETATM 11 O O2A ATP . . . F 6 150.591 126.778 102.443 1 26.58 ? O2A ATP 601 B 1 
HETATM 12 O O3A ATP . . . F 6 152.534 126.774 100.898 1 26.58 ? O3A ATP 601 B 1 
HETATM 13 O O5' ATP . . . F 6 152.69 125.53 103.162 1 26.58 ? O5' ATP 601 B 1 
HETATM 14 C C5' ATP . . . F 6 153.744 124.743 102.615 1 26.58 ? C5' ATP 601 B 1 
HETATM 15 C C4' ATP . . . F 6 154.048 123.584 103.558 1 26.58 ? C4' ATP 601 B 1 
HETATM 16 O O4' ATP . . . F 6 154.692 124.037 104.748 1 26.58 ? O4' ATP 601 B 1 
HETATM 17 C C3' ATP . . . F 6 152.785 122.868 104.005 1 26.58 ? C3' ATP 601 B 1 
HETATM 18 O O3' ATP . . . F 6 152.761 121.55 103.455 1 26.58 ? O3' ATP 601 B 1 
HETATM 19 C C2' ATP . . . F 6 152.874 122.769 105.51 1 26.58 ? C2' ATP 601 B 1 
HETATM 20 O O2' ATP . . . F 6 152.672 121.414 105.913 1 26.58 ? O2' ATP 601 B 1 
HETATM 21 C C1' ATP . . . F 6 154.289 123.199 105.832 1 26.58 ? C1' ATP 601 B 1 
HETATM 22 N N9 ATP . . . F 6 154.378 123.903 107.137 1 26.58 ? N9 ATP 601 B 1 
HETATM 23 C C8 ATP . . . F 6 154.894 123.376 108.263 1 26.58 ? C8 ATP 601 B 1 
HETATM 24 N N7 ATP . . . F 6 154.844 124.257 109.291 1 26.58 ? N7 ATP 601 B 1 
HETATM 25 C C5 ATP . . . F 6 154.283 125.381 108.82 1 26.58 ? C5 ATP 601 B 1 
HETATM 26 C C6 ATP . . . F 6 153.934 126.702 109.379 1 26.58 ? C6 ATP 601 B 1 
HETATM 27 N N6 ATP . . . F 6 154.181 126.996 110.678 1 26.58 ? N6 ATP 601 B 1 
HETATM 28 N N1 ATP . . . F 6 153.36 127.601 108.552 1 26.58 ? N1 ATP 601 B 1 
HETATM 29 C C2 ATP . . . F 6 153.11 127.316 107.261 1 26.58 ? C2 ATP 601 B 1 
HETATM 30 N N3 ATP . . . F 6 153.401 126.137 106.688 1 26.58 ? N3 ATP 601 B 1 
HETATM 31 C C4 ATP . . . F 6 153.977 125.145 107.402 1 26.58 ? C4 ATP 601 B 1 
#
_model_server_stats.io_time_ms              46 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           344 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           31 
#