data_6RBI
#
_model_server_result.job_id            ZlU81HngFg3ImTyaVVXEoQ 
_model_server_result.datetime_utc      '2024-12-01 19:43:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6rbi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":804}' 
#
_entry.id    6RBI 
#
_exptl.entry_id    6RBI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6RBI 
_cell.length_a            142.15 
_cell.length_b            142.15 
_cell.length_c            151.54 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6RBI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 G N N 
? 5 H N N 
? 5 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 68 A ASN 91 1_555 K NA NA . A NA 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? 
metalc ? metalc2 A O LEU 122 A LEU 413 1_555 K NA NA . A NA 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? 
metalc ? metalc3 A O THR 125 A THR 416 1_555 K NA NA . A NA 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? 
metalc ? metalc4 A O GLU 128 A GLU 419 1_555 K NA NA . A NA 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.984 ? 
metalc ? metalc5 A NE2 HIS 208 A HIS 499 1_555 C MN MN . A MN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? 
metalc ? metalc6 A OE2 GLU 210 A GLU 501 1_555 C MN MN . A MN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? 
metalc ? metalc7 A SG CYS 401 A CYS 692 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
metalc ? metalc8 A SG CYS 404 A CYS 695 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? 
metalc ? metalc9 A SG CYS 415 A CYS 706 1_555 J ZN ZN . A ZN 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
metalc ? metalc10 A SG CYS 417 A CYS 708 1_555 J ZN ZN . A ZN 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
metalc ? metalc11 A SG CYS 424 A CYS 715 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? 
metalc ? metalc12 A ND1 HIS 427 A HIS 718 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
metalc ? metalc13 A SG CYS 432 A CYS 723 1_555 J ZN ZN . A ZN 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc14 A SG CYS 434 A CYS 725 1_555 J ZN ZN . A ZN 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? 
metalc ? metalc15 C MN MN . A MN 802 1_555 F O JX8 . A JX8 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
metalc ? metalc16 C MN MN . A MN 802 1_555 F N4 JX8 . A JX8 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? 
metalc ? metalc17 C MN MN . A MN 802 1_555 M O HOH . A HOH 985 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc18 C MN MN . A MN 802 1_555 M O HOH . A HOH 996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? 
metalc ? metalc19 K NA NA . A NA 810 1_555 M O HOH . A HOH 967 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? 
metalc ? metalc20 K NA NA . A NA 810 1_555 M O HOH . A HOH 1012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.195 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     6RBI 
_atom_sites.fract_transf_matrix[1][1]    0.007035 
_atom_sites.fract_transf_matrix[1][2]    0.004062 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008123 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006599 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 801 1754 ZN ZN . 
C 3 MN A 1 802 1757 MN MN . 
D 4 PO4 A 1 803 1759 PO4 PO4 . 
E 5 EDO A 1 804 1762 EDO EDO . 
F 6 JX8 A 1 805 1 JX8 LIG . 
G 5 EDO A 1 806 6 EDO EDO . 
H 5 EDO A 1 807 10 EDO EDO . 
I 5 EDO A 1 808 11 EDO EDO . 
J 2 ZN A 1 809 1 ZN ZN . 
K 7 NA A 1 810 2 NA NA . 
L 7 NA A 1 811 3 NA NA . 
M 8 HOH A 1 901 260 HOH HOH . 
M 8 HOH A 2 902 250 HOH HOH . 
M 8 HOH A 3 903 279 HOH HOH . 
M 8 HOH A 4 904 267 HOH HOH . 
M 8 HOH A 5 905 259 HOH HOH . 
M 8 HOH A 6 906 268 HOH HOH . 
M 8 HOH A 7 907 296 HOH HOH . 
M 8 HOH A 8 908 253 HOH HOH . 
M 8 HOH A 9 909 283 HOH HOH . 
M 8 HOH A 10 910 287 HOH HOH . 
M 8 HOH A 11 911 273 HOH HOH . 
M 8 HOH A 12 912 270 HOH HOH . 
M 8 HOH A 13 913 182 HOH HOH . 
M 8 HOH A 14 914 223 HOH HOH . 
M 8 HOH A 15 915 179 HOH HOH . 
M 8 HOH A 16 916 284 HOH HOH . 
M 8 HOH A 17 917 159 HOH HOH . 
M 8 HOH A 18 918 275 HOH HOH . 
M 8 HOH A 19 919 217 HOH HOH . 
M 8 HOH A 20 920 208 HOH HOH . 
M 8 HOH A 21 921 201 HOH HOH . 
M 8 HOH A 22 922 189 HOH HOH . 
M 8 HOH A 23 923 216 HOH HOH . 
M 8 HOH A 24 924 278 HOH HOH . 
M 8 HOH A 25 925 192 HOH HOH . 
M 8 HOH A 26 926 168 HOH HOH . 
M 8 HOH A 27 927 280 HOH HOH . 
M 8 HOH A 28 928 213 HOH HOH . 
M 8 HOH A 29 929 265 HOH HOH . 
M 8 HOH A 30 930 207 HOH HOH . 
M 8 HOH A 31 931 195 HOH HOH . 
M 8 HOH A 32 932 183 HOH HOH . 
M 8 HOH A 33 933 285 HOH HOH . 
M 8 HOH A 34 934 230 HOH HOH . 
M 8 HOH A 35 935 225 HOH HOH . 
M 8 HOH A 36 936 202 HOH HOH . 
M 8 HOH A 37 937 257 HOH HOH . 
M 8 HOH A 38 938 276 HOH HOH . 
M 8 HOH A 39 939 169 HOH HOH . 
M 8 HOH A 40 940 277 HOH HOH . 
M 8 HOH A 41 941 209 HOH HOH . 
M 8 HOH A 42 942 254 HOH HOH . 
M 8 HOH A 43 943 205 HOH HOH . 
M 8 HOH A 44 944 199 HOH HOH . 
M 8 HOH A 45 945 203 HOH HOH . 
M 8 HOH A 46 946 306 HOH HOH . 
M 8 HOH A 47 947 206 HOH HOH . 
M 8 HOH A 48 948 244 HOH HOH . 
M 8 HOH A 49 949 288 HOH HOH . 
M 8 HOH A 50 950 297 HOH HOH . 
M 8 HOH A 51 951 235 HOH HOH . 
M 8 HOH A 52 952 188 HOH HOH . 
M 8 HOH A 53 953 219 HOH HOH . 
M 8 HOH A 54 954 272 HOH HOH . 
M 8 HOH A 55 955 256 HOH HOH . 
M 8 HOH A 56 956 197 HOH HOH . 
M 8 HOH A 57 957 215 HOH HOH . 
M 8 HOH A 58 958 298 HOH HOH . 
M 8 HOH A 59 959 191 HOH HOH . 
M 8 HOH A 60 960 294 HOH HOH . 
M 8 HOH A 61 961 200 HOH HOH . 
M 8 HOH A 62 962 204 HOH HOH . 
M 8 HOH A 63 963 138 HOH HOH . 
M 8 HOH A 64 964 12 HOH HOH . 
M 8 HOH A 65 965 234 HOH HOH . 
M 8 HOH A 66 966 198 HOH HOH . 
M 8 HOH A 67 967 228 HOH HOH . 
M 8 HOH A 68 968 184 HOH HOH . 
M 8 HOH A 69 969 210 HOH HOH . 
M 8 HOH A 70 970 17 HOH HOH . 
M 8 HOH A 71 971 212 HOH HOH . 
M 8 HOH A 72 972 7 HOH HOH . 
M 8 HOH A 73 973 194 HOH HOH . 
M 8 HOH A 74 974 177 HOH HOH . 
M 8 HOH A 75 975 226 HOH HOH . 
M 8 HOH A 76 976 2 HOH HOH . 
M 8 HOH A 77 977 232 HOH HOH . 
M 8 HOH A 78 978 224 HOH HOH . 
M 8 HOH A 79 979 258 HOH HOH . 
M 8 HOH A 80 980 243 HOH HOH . 
M 8 HOH A 81 981 211 HOH HOH . 
M 8 HOH A 82 982 13 HOH HOH . 
M 8 HOH A 83 983 303 HOH HOH . 
M 8 HOH A 84 984 175 HOH HOH . 
M 8 HOH A 85 985 221 HOH HOH . 
M 8 HOH A 86 986 266 HOH HOH . 
M 8 HOH A 87 987 269 HOH HOH . 
M 8 HOH A 88 988 248 HOH HOH . 
M 8 HOH A 89 989 291 HOH HOH . 
M 8 HOH A 90 990 196 HOH HOH . 
M 8 HOH A 91 991 307 HOH HOH . 
M 8 HOH A 92 992 242 HOH HOH . 
M 8 HOH A 93 993 305 HOH HOH . 
M 8 HOH A 94 994 190 HOH HOH . 
M 8 HOH A 95 995 274 HOH HOH . 
M 8 HOH A 96 996 20 HOH HOH . 
M 8 HOH A 97 997 170 HOH HOH . 
M 8 HOH A 98 998 299 HOH HOH . 
M 8 HOH A 99 999 251 HOH HOH . 
M 8 HOH A 100 1000 252 HOH HOH . 
M 8 HOH A 101 1001 290 HOH HOH . 
M 8 HOH A 102 1002 281 HOH HOH . 
M 8 HOH A 103 1003 282 HOH HOH . 
M 8 HOH A 104 1004 292 HOH HOH . 
M 8 HOH A 105 1005 255 HOH HOH . 
M 8 HOH A 106 1006 227 HOH HOH . 
M 8 HOH A 107 1007 289 HOH HOH . 
M 8 HOH A 108 1008 214 HOH HOH . 
M 8 HOH A 109 1009 218 HOH HOH . 
M 8 HOH A 110 1010 271 HOH HOH . 
M 8 HOH A 111 1011 249 HOH HOH . 
M 8 HOH A 112 1012 304 HOH HOH . 
M 8 HOH A 113 1013 293 HOH HOH . 
M 8 HOH A 114 1014 173 HOH HOH . 
M 8 HOH A 115 1015 264 HOH HOH . 
M 8 HOH A 116 1016 247 HOH HOH . 
M 8 HOH A 117 1017 301 HOH HOH . 
M 8 HOH A 118 1018 300 HOH HOH . 
M 8 HOH A 119 1019 295 HOH HOH . 
M 8 HOH A 120 1020 241 HOH HOH . 
M 8 HOH A 121 1021 302 HOH HOH . 
M 8 HOH A 122 1022 222 HOH HOH . 
M 8 HOH A 123 1023 262 HOH HOH . 
M 8 HOH A 124 1024 261 HOH HOH . 
M 8 HOH A 125 1025 263 HOH HOH . 
M 8 HOH A 126 1026 286 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . E 5 59.459 51.287 1.376 1 55.66 ? C1 EDO 804 A 1 
HETATM 2 O O1 EDO . . . E 5 59.873 51.703 0.062 1 44.5 ? O1 EDO 804 A 1 
HETATM 3 C C2 EDO . . . E 5 60.54 50.473 2.091 1 52.42 ? C2 EDO 804 A 1 
HETATM 4 O O2 EDO . . . E 5 61.564 51.331 2.623 1 55.79 ? O2 EDO 804 A 1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           37 
_model_server_stats.create_model_time_ms    71 
_model_server_stats.query_time_ms           1246 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           4 
#