data_6RBI # _model_server_result.job_id iKSW9cIwljd20b_sUo1SUg _model_server_result.datetime_utc '2024-11-01 19:36:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rbi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":811}' # _entry.id 6RBI # _exptl.entry_id 6RBI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6RBI _cell.length_a 142.15 _cell.length_b 142.15 _cell.length_c 151.54 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RBI _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 K N N ? 7 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 68 A ASN 91 1_555 K NA NA . A NA 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc2 A O LEU 122 A LEU 413 1_555 K NA NA . A NA 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? metalc ? metalc3 A O THR 125 A THR 416 1_555 K NA NA . A NA 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc4 A O GLU 128 A GLU 419 1_555 K NA NA . A NA 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.984 ? metalc ? metalc5 A NE2 HIS 208 A HIS 499 1_555 C MN MN . A MN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc6 A OE2 GLU 210 A GLU 501 1_555 C MN MN . A MN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc7 A SG CYS 401 A CYS 692 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc8 A SG CYS 404 A CYS 695 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc9 A SG CYS 415 A CYS 706 1_555 J ZN ZN . A ZN 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc10 A SG CYS 417 A CYS 708 1_555 J ZN ZN . A ZN 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc11 A SG CYS 424 A CYS 715 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc12 A ND1 HIS 427 A HIS 718 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc13 A SG CYS 432 A CYS 723 1_555 J ZN ZN . A ZN 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc14 A SG CYS 434 A CYS 725 1_555 J ZN ZN . A ZN 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc15 C MN MN . A MN 802 1_555 F O JX8 . A JX8 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc16 C MN MN . A MN 802 1_555 F N4 JX8 . A JX8 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc17 C MN MN . A MN 802 1_555 M O HOH . A HOH 985 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc18 C MN MN . A MN 802 1_555 M O HOH . A HOH 996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc19 K NA NA . A NA 810 1_555 M O HOH . A HOH 967 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc20 K NA NA . A NA 810 1_555 M O HOH . A HOH 1012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.195 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6RBI _atom_sites.fract_transf_matrix[1][1] 0.007035 _atom_sites.fract_transf_matrix[1][2] 0.004062 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008123 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006599 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 801 1754 ZN ZN . C 3 MN A 1 802 1757 MN MN . D 4 PO4 A 1 803 1759 PO4 PO4 . E 5 EDO A 1 804 1762 EDO EDO . F 6 JX8 A 1 805 1 JX8 LIG . G 5 EDO A 1 806 6 EDO EDO . H 5 EDO A 1 807 10 EDO EDO . I 5 EDO A 1 808 11 EDO EDO . J 2 ZN A 1 809 1 ZN ZN . K 7 NA A 1 810 2 NA NA . L 7 NA A 1 811 3 NA NA . M 8 HOH A 1 901 260 HOH HOH . M 8 HOH A 2 902 250 HOH HOH . M 8 HOH A 3 903 279 HOH HOH . M 8 HOH A 4 904 267 HOH HOH . M 8 HOH A 5 905 259 HOH HOH . M 8 HOH A 6 906 268 HOH HOH . M 8 HOH A 7 907 296 HOH HOH . M 8 HOH A 8 908 253 HOH HOH . M 8 HOH A 9 909 283 HOH HOH . M 8 HOH A 10 910 287 HOH HOH . M 8 HOH A 11 911 273 HOH HOH . M 8 HOH A 12 912 270 HOH HOH . M 8 HOH A 13 913 182 HOH HOH . M 8 HOH A 14 914 223 HOH HOH . M 8 HOH A 15 915 179 HOH HOH . M 8 HOH A 16 916 284 HOH HOH . M 8 HOH A 17 917 159 HOH HOH . M 8 HOH A 18 918 275 HOH HOH . M 8 HOH A 19 919 217 HOH HOH . M 8 HOH A 20 920 208 HOH HOH . M 8 HOH A 21 921 201 HOH HOH . M 8 HOH A 22 922 189 HOH HOH . M 8 HOH A 23 923 216 HOH HOH . M 8 HOH A 24 924 278 HOH HOH . M 8 HOH A 25 925 192 HOH HOH . M 8 HOH A 26 926 168 HOH HOH . M 8 HOH A 27 927 280 HOH HOH . M 8 HOH A 28 928 213 HOH HOH . M 8 HOH A 29 929 265 HOH HOH . M 8 HOH A 30 930 207 HOH HOH . M 8 HOH A 31 931 195 HOH HOH . M 8 HOH A 32 932 183 HOH HOH . M 8 HOH A 33 933 285 HOH HOH . M 8 HOH A 34 934 230 HOH HOH . M 8 HOH A 35 935 225 HOH HOH . M 8 HOH A 36 936 202 HOH HOH . M 8 HOH A 37 937 257 HOH HOH . M 8 HOH A 38 938 276 HOH HOH . M 8 HOH A 39 939 169 HOH HOH . M 8 HOH A 40 940 277 HOH HOH . M 8 HOH A 41 941 209 HOH HOH . M 8 HOH A 42 942 254 HOH HOH . M 8 HOH A 43 943 205 HOH HOH . M 8 HOH A 44 944 199 HOH HOH . M 8 HOH A 45 945 203 HOH HOH . M 8 HOH A 46 946 306 HOH HOH . M 8 HOH A 47 947 206 HOH HOH . M 8 HOH A 48 948 244 HOH HOH . M 8 HOH A 49 949 288 HOH HOH . M 8 HOH A 50 950 297 HOH HOH . M 8 HOH A 51 951 235 HOH HOH . M 8 HOH A 52 952 188 HOH HOH . M 8 HOH A 53 953 219 HOH HOH . M 8 HOH A 54 954 272 HOH HOH . M 8 HOH A 55 955 256 HOH HOH . M 8 HOH A 56 956 197 HOH HOH . M 8 HOH A 57 957 215 HOH HOH . M 8 HOH A 58 958 298 HOH HOH . M 8 HOH A 59 959 191 HOH HOH . M 8 HOH A 60 960 294 HOH HOH . M 8 HOH A 61 961 200 HOH HOH . M 8 HOH A 62 962 204 HOH HOH . M 8 HOH A 63 963 138 HOH HOH . M 8 HOH A 64 964 12 HOH HOH . M 8 HOH A 65 965 234 HOH HOH . M 8 HOH A 66 966 198 HOH HOH . M 8 HOH A 67 967 228 HOH HOH . M 8 HOH A 68 968 184 HOH HOH . M 8 HOH A 69 969 210 HOH HOH . M 8 HOH A 70 970 17 HOH HOH . M 8 HOH A 71 971 212 HOH HOH . M 8 HOH A 72 972 7 HOH HOH . M 8 HOH A 73 973 194 HOH HOH . M 8 HOH A 74 974 177 HOH HOH . M 8 HOH A 75 975 226 HOH HOH . M 8 HOH A 76 976 2 HOH HOH . M 8 HOH A 77 977 232 HOH HOH . M 8 HOH A 78 978 224 HOH HOH . M 8 HOH A 79 979 258 HOH HOH . M 8 HOH A 80 980 243 HOH HOH . M 8 HOH A 81 981 211 HOH HOH . M 8 HOH A 82 982 13 HOH HOH . M 8 HOH A 83 983 303 HOH HOH . M 8 HOH A 84 984 175 HOH HOH . M 8 HOH A 85 985 221 HOH HOH . M 8 HOH A 86 986 266 HOH HOH . M 8 HOH A 87 987 269 HOH HOH . M 8 HOH A 88 988 248 HOH HOH . M 8 HOH A 89 989 291 HOH HOH . M 8 HOH A 90 990 196 HOH HOH . M 8 HOH A 91 991 307 HOH HOH . M 8 HOH A 92 992 242 HOH HOH . M 8 HOH A 93 993 305 HOH HOH . M 8 HOH A 94 994 190 HOH HOH . M 8 HOH A 95 995 274 HOH HOH . M 8 HOH A 96 996 20 HOH HOH . M 8 HOH A 97 997 170 HOH HOH . M 8 HOH A 98 998 299 HOH HOH . M 8 HOH A 99 999 251 HOH HOH . M 8 HOH A 100 1000 252 HOH HOH . M 8 HOH A 101 1001 290 HOH HOH . M 8 HOH A 102 1002 281 HOH HOH . M 8 HOH A 103 1003 282 HOH HOH . M 8 HOH A 104 1004 292 HOH HOH . M 8 HOH A 105 1005 255 HOH HOH . M 8 HOH A 106 1006 227 HOH HOH . M 8 HOH A 107 1007 289 HOH HOH . M 8 HOH A 108 1008 214 HOH HOH . M 8 HOH A 109 1009 218 HOH HOH . M 8 HOH A 110 1010 271 HOH HOH . M 8 HOH A 111 1011 249 HOH HOH . M 8 HOH A 112 1012 304 HOH HOH . M 8 HOH A 113 1013 293 HOH HOH . M 8 HOH A 114 1014 173 HOH HOH . M 8 HOH A 115 1015 264 HOH HOH . M 8 HOH A 116 1016 247 HOH HOH . M 8 HOH A 117 1017 301 HOH HOH . M 8 HOH A 118 1018 300 HOH HOH . M 8 HOH A 119 1019 295 HOH HOH . M 8 HOH A 120 1020 241 HOH HOH . M 8 HOH A 121 1021 302 HOH HOH . M 8 HOH A 122 1022 222 HOH HOH . M 8 HOH A 123 1023 262 HOH HOH . M 8 HOH A 124 1024 261 HOH HOH . M 8 HOH A 125 1025 263 HOH HOH . M 8 HOH A 126 1026 286 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 7 _atom_site.Cartn_x 74.549 _atom_site.Cartn_y 66.983 _atom_site.Cartn_z 1.27 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 60.1 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 811 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #