data_6RBJ # _model_server_result.job_id WZ-XQ8A7wlgx07jYs3mb8w _model_server_result.datetime_utc '2024-11-29 18:08:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rbj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1801}' # _entry.id 6RBJ # _exptl.entry_id 6RBJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.29 _cell.angle_gamma 90 _cell.entry_id 6RBJ _cell.length_a 56.929 _cell.length_b 93.754 _cell.length_c 90.494 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RBJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,M 1 1 B,H,I,J,K,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 H N N ? 2 I N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 183 A HIS 1560 1_555 F MN MN . A MN 1804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc2 A OD2 ASP 185 A ASP 1562 1_555 F MN MN . A MN 1804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc3 E O JX8 . A JX8 1803 1_555 F MN MN . A MN 1804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc4 E N4 JX8 . A JX8 1803 1_555 F MN MN . A MN 1804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc5 F MN MN . A MN 1804 1_555 M O HOH . A HOH 1931 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc6 F MN MN . A MN 1804 1_555 M O HOH . A HOH 1944 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc7 B NE2 HIS 183 B HIS 1560 1_555 L MN MN . B MN 1805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc8 B OD2 ASP 185 B ASP 1562 1_555 L MN MN . B MN 1805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc9 K O JX8 . B JX8 1804 1_555 L MN MN . B MN 1805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc10 K N4 JX8 . B JX8 1804 1_555 L MN MN . B MN 1805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc11 L MN MN . B MN 1805 1_555 N O HOH . B HOH 1905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6RBJ _atom_sites.fract_transf_matrix[1][1] 0.017566 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005468 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010666 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011574 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 1801 1 EDO EDO . D 2 EDO A 1 1802 3 EDO EDO . E 3 JX8 A 1 1803 2 JX8 LIG . F 4 MN A 1 1804 2 MN MN . G 5 CL A 1 1805 2 CL CL . H 2 EDO B 1 1801 5 EDO EDO . I 2 EDO B 1 1802 8 EDO EDO . J 2 EDO B 1 1803 10 EDO EDO . K 3 JX8 B 1 1804 1 JX8 LIG . L 4 MN B 1 1805 3 MN MN . M 6 HOH A 1 1901 96 HOH HOH . M 6 HOH A 2 1902 337 HOH HOH . M 6 HOH A 3 1903 57 HOH HOH . M 6 HOH A 4 1904 350 HOH HOH . M 6 HOH A 5 1905 42 HOH HOH . M 6 HOH A 6 1906 152 HOH HOH . M 6 HOH A 7 1907 84 HOH HOH . M 6 HOH A 8 1908 340 HOH HOH . M 6 HOH A 9 1909 194 HOH HOH . M 6 HOH A 10 1910 11 HOH HOH . M 6 HOH A 11 1911 45 HOH HOH . M 6 HOH A 12 1912 25 HOH HOH . M 6 HOH A 13 1913 181 HOH HOH . M 6 HOH A 14 1914 150 HOH HOH . M 6 HOH A 15 1915 56 HOH HOH . M 6 HOH A 16 1916 351 HOH HOH . M 6 HOH A 17 1917 64 HOH HOH . M 6 HOH A 18 1918 141 HOH HOH . M 6 HOH A 19 1919 344 HOH HOH . M 6 HOH A 20 1920 348 HOH HOH . M 6 HOH A 21 1921 342 HOH HOH . M 6 HOH A 22 1922 51 HOH HOH . M 6 HOH A 23 1923 47 HOH HOH . M 6 HOH A 24 1924 6 HOH HOH . M 6 HOH A 25 1925 8 HOH HOH . M 6 HOH A 26 1926 339 HOH HOH . M 6 HOH A 27 1927 14 HOH HOH . M 6 HOH A 28 1928 34 HOH HOH . M 6 HOH A 29 1929 15 HOH HOH . M 6 HOH A 30 1930 72 HOH HOH . M 6 HOH A 31 1931 318 HOH HOH . M 6 HOH A 32 1932 68 HOH HOH . M 6 HOH A 33 1933 71 HOH HOH . M 6 HOH A 34 1934 13 HOH HOH . M 6 HOH A 35 1935 7 HOH HOH . M 6 HOH A 36 1936 5 HOH HOH . M 6 HOH A 37 1937 88 HOH HOH . M 6 HOH A 38 1938 17 HOH HOH . M 6 HOH A 39 1939 294 HOH HOH . M 6 HOH A 40 1940 86 HOH HOH . M 6 HOH A 41 1941 39 HOH HOH . M 6 HOH A 42 1942 19 HOH HOH . M 6 HOH A 43 1943 27 HOH HOH . M 6 HOH A 44 1944 324 HOH HOH . M 6 HOH A 45 1945 338 HOH HOH . M 6 HOH A 46 1946 345 HOH HOH . M 6 HOH A 47 1947 343 HOH HOH . M 6 HOH A 48 1948 2 HOH HOH . M 6 HOH A 49 1949 105 HOH HOH . M 6 HOH A 50 1950 24 HOH HOH . M 6 HOH A 51 1951 322 HOH HOH . M 6 HOH A 52 1952 43 HOH HOH . M 6 HOH A 53 1953 104 HOH HOH . M 6 HOH A 54 1954 59 HOH HOH . M 6 HOH A 55 1955 113 HOH HOH . M 6 HOH A 56 1956 4 HOH HOH . M 6 HOH A 57 1957 87 HOH HOH . M 6 HOH A 58 1958 91 HOH HOH . M 6 HOH A 59 1959 341 HOH HOH . M 6 HOH A 60 1960 131 HOH HOH . M 6 HOH A 61 1961 130 HOH HOH . M 6 HOH A 62 1962 347 HOH HOH . M 6 HOH A 63 1963 54 HOH HOH . M 6 HOH A 64 1964 304 HOH HOH . M 6 HOH A 65 1965 78 HOH HOH . M 6 HOH A 66 1966 1 HOH HOH . M 6 HOH A 67 1967 90 HOH HOH . M 6 HOH A 68 1968 128 HOH HOH . M 6 HOH A 69 1969 353 HOH HOH . M 6 HOH A 70 1970 97 HOH HOH . M 6 HOH A 71 1971 9 HOH HOH . M 6 HOH A 72 1972 333 HOH HOH . M 6 HOH A 73 1973 336 HOH HOH . M 6 HOH A 74 1974 321 HOH HOH . M 6 HOH A 75 1975 138 HOH HOH . M 6 HOH A 76 1976 196 HOH HOH . M 6 HOH A 77 1977 94 HOH HOH . M 6 HOH A 78 1978 155 HOH HOH . M 6 HOH A 79 1979 170 HOH HOH . M 6 HOH A 80 1980 172 HOH HOH . M 6 HOH A 81 1981 323 HOH HOH . N 6 HOH B 1 1901 330 HOH HOH . N 6 HOH B 2 1902 328 HOH HOH . N 6 HOH B 3 1903 352 HOH HOH . N 6 HOH B 4 1904 329 HOH HOH . N 6 HOH B 5 1905 183 HOH HOH . N 6 HOH B 6 1906 36 HOH HOH . N 6 HOH B 7 1907 26 HOH HOH . N 6 HOH B 8 1908 146 HOH HOH . N 6 HOH B 9 1909 325 HOH HOH . N 6 HOH B 10 1910 335 HOH HOH . N 6 HOH B 11 1911 61 HOH HOH . N 6 HOH B 12 1912 82 HOH HOH . N 6 HOH B 13 1913 106 HOH HOH . N 6 HOH B 14 1914 103 HOH HOH . N 6 HOH B 15 1915 129 HOH HOH . N 6 HOH B 16 1916 334 HOH HOH . N 6 HOH B 17 1917 30 HOH HOH . N 6 HOH B 18 1918 18 HOH HOH . N 6 HOH B 19 1919 10 HOH HOH . N 6 HOH B 20 1920 20 HOH HOH . N 6 HOH B 21 1921 119 HOH HOH . N 6 HOH B 22 1922 145 HOH HOH . N 6 HOH B 23 1923 22 HOH HOH . N 6 HOH B 24 1924 346 HOH HOH . N 6 HOH B 25 1925 49 HOH HOH . N 6 HOH B 26 1926 332 HOH HOH . N 6 HOH B 27 1927 331 HOH HOH . N 6 HOH B 28 1928 38 HOH HOH . N 6 HOH B 29 1929 108 HOH HOH . N 6 HOH B 30 1930 70 HOH HOH . N 6 HOH B 31 1931 60 HOH HOH . N 6 HOH B 32 1932 326 HOH HOH . N 6 HOH B 33 1933 31 HOH HOH . N 6 HOH B 34 1934 35 HOH HOH . N 6 HOH B 35 1935 37 HOH HOH . N 6 HOH B 36 1936 349 HOH HOH . N 6 HOH B 37 1937 67 HOH HOH . N 6 HOH B 38 1938 112 HOH HOH . N 6 HOH B 39 1939 100 HOH HOH . N 6 HOH B 40 1940 63 HOH HOH . N 6 HOH B 41 1941 118 HOH HOH . N 6 HOH B 42 1942 76 HOH HOH . N 6 HOH B 43 1943 32 HOH HOH . N 6 HOH B 44 1944 89 HOH HOH . N 6 HOH B 45 1945 327 HOH HOH . N 6 HOH B 46 1946 309 HOH HOH . N 6 HOH B 47 1947 62 HOH HOH . N 6 HOH B 48 1948 198 HOH HOH . N 6 HOH B 49 1949 319 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 2 2.458 79.597 126.056 1 61.91 ? C1 EDO 1801 A 1 HETATM 2 O O1 EDO . . . C 2 2.603 78.18 125.93 1 61.51 ? O1 EDO 1801 A 1 HETATM 3 C C2 EDO . . . C 2 3.362 80.128 127.166 1 60.82 ? C2 EDO 1801 A 1 HETATM 4 O O2 EDO . . . C 2 4.704 80.284 126.684 1 60.65 ? O2 EDO 1801 A 1 HETATM 5 H H11 EDO . . . C 2 2.718 80.078 125.111 1 74.32 ? H11 EDO 1801 A 1 HETATM 6 H H12 EDO . . . C 2 1.418 79.84 126.284 1 74.32 ? H12 EDO 1801 A 1 HETATM 7 H HO1 EDO . . . C 2 2.025 77.859 125.224 1 73.85 ? HO1 EDO 1801 A 1 HETATM 8 H H21 EDO . . . C 2 2.984 81.091 127.517 1 73.03 ? H21 EDO 1801 A 1 HETATM 9 H H22 EDO . . . C 2 3.353 79.434 128.009 1 73.03 ? H22 EDO 1801 A 1 HETATM 10 H HO2 EDO . . . C 2 5.266 80.62 127.396 1 72.82 ? HO2 EDO 1801 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #