data_6RBJ
#
_model_server_result.job_id            G3U5WgdHSi0Nq7GcVrY_3A 
_model_server_result.datetime_utc      '2024-11-01 13:34:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6rbj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1801}' 
#
_entry.id    6RBJ 
#
_exptl.entry_id    6RBJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.29 
_cell.angle_gamma         90 
_cell.entry_id            6RBJ 
_cell.length_a            56.929 
_cell.length_b            93.754 
_cell.length_c            90.494 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6RBJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,M 1 1 
B,H,I,J,K,L,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 183 A HIS 1560 1_555 F MN MN . A MN 1804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? 
metalc ? metalc2 A OD2 ASP 185 A ASP 1562 1_555 F MN MN . A MN 1804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc3 E O JX8 . A JX8 1803 1_555 F MN MN . A MN 1804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
metalc ? metalc4 E N4 JX8 . A JX8 1803 1_555 F MN MN . A MN 1804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc5 F MN MN . A MN 1804 1_555 M O HOH . A HOH 1931 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? 
metalc ? metalc6 F MN MN . A MN 1804 1_555 M O HOH . A HOH 1944 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? 
metalc ? metalc7 B NE2 HIS 183 B HIS 1560 1_555 L MN MN . B MN 1805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? 
metalc ? metalc8 B OD2 ASP 185 B ASP 1562 1_555 L MN MN . B MN 1805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc9 K O JX8 . B JX8 1804 1_555 L MN MN . B MN 1805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? 
metalc ? metalc10 K N4 JX8 . B JX8 1804 1_555 L MN MN . B MN 1805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc11 L MN MN . B MN 1805 1_555 N O HOH . B HOH 1905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     6RBJ 
_atom_sites.fract_transf_matrix[1][1]    0.017566 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005468 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010666 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011574 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 EDO A 1 1801 1 EDO EDO . 
D 2 EDO A 1 1802 3 EDO EDO . 
E 3 JX8 A 1 1803 2 JX8 LIG . 
F 4 MN A 1 1804 2 MN MN . 
G 5 CL A 1 1805 2 CL CL . 
H 2 EDO B 1 1801 5 EDO EDO . 
I 2 EDO B 1 1802 8 EDO EDO . 
J 2 EDO B 1 1803 10 EDO EDO . 
K 3 JX8 B 1 1804 1 JX8 LIG . 
L 4 MN B 1 1805 3 MN MN . 
M 6 HOH A 1 1901 96 HOH HOH . 
M 6 HOH A 2 1902 337 HOH HOH . 
M 6 HOH A 3 1903 57 HOH HOH . 
M 6 HOH A 4 1904 350 HOH HOH . 
M 6 HOH A 5 1905 42 HOH HOH . 
M 6 HOH A 6 1906 152 HOH HOH . 
M 6 HOH A 7 1907 84 HOH HOH . 
M 6 HOH A 8 1908 340 HOH HOH . 
M 6 HOH A 9 1909 194 HOH HOH . 
M 6 HOH A 10 1910 11 HOH HOH . 
M 6 HOH A 11 1911 45 HOH HOH . 
M 6 HOH A 12 1912 25 HOH HOH . 
M 6 HOH A 13 1913 181 HOH HOH . 
M 6 HOH A 14 1914 150 HOH HOH . 
M 6 HOH A 15 1915 56 HOH HOH . 
M 6 HOH A 16 1916 351 HOH HOH . 
M 6 HOH A 17 1917 64 HOH HOH . 
M 6 HOH A 18 1918 141 HOH HOH . 
M 6 HOH A 19 1919 344 HOH HOH . 
M 6 HOH A 20 1920 348 HOH HOH . 
M 6 HOH A 21 1921 342 HOH HOH . 
M 6 HOH A 22 1922 51 HOH HOH . 
M 6 HOH A 23 1923 47 HOH HOH . 
M 6 HOH A 24 1924 6 HOH HOH . 
M 6 HOH A 25 1925 8 HOH HOH . 
M 6 HOH A 26 1926 339 HOH HOH . 
M 6 HOH A 27 1927 14 HOH HOH . 
M 6 HOH A 28 1928 34 HOH HOH . 
M 6 HOH A 29 1929 15 HOH HOH . 
M 6 HOH A 30 1930 72 HOH HOH . 
M 6 HOH A 31 1931 318 HOH HOH . 
M 6 HOH A 32 1932 68 HOH HOH . 
M 6 HOH A 33 1933 71 HOH HOH . 
M 6 HOH A 34 1934 13 HOH HOH . 
M 6 HOH A 35 1935 7 HOH HOH . 
M 6 HOH A 36 1936 5 HOH HOH . 
M 6 HOH A 37 1937 88 HOH HOH . 
M 6 HOH A 38 1938 17 HOH HOH . 
M 6 HOH A 39 1939 294 HOH HOH . 
M 6 HOH A 40 1940 86 HOH HOH . 
M 6 HOH A 41 1941 39 HOH HOH . 
M 6 HOH A 42 1942 19 HOH HOH . 
M 6 HOH A 43 1943 27 HOH HOH . 
M 6 HOH A 44 1944 324 HOH HOH . 
M 6 HOH A 45 1945 338 HOH HOH . 
M 6 HOH A 46 1946 345 HOH HOH . 
M 6 HOH A 47 1947 343 HOH HOH . 
M 6 HOH A 48 1948 2 HOH HOH . 
M 6 HOH A 49 1949 105 HOH HOH . 
M 6 HOH A 50 1950 24 HOH HOH . 
M 6 HOH A 51 1951 322 HOH HOH . 
M 6 HOH A 52 1952 43 HOH HOH . 
M 6 HOH A 53 1953 104 HOH HOH . 
M 6 HOH A 54 1954 59 HOH HOH . 
M 6 HOH A 55 1955 113 HOH HOH . 
M 6 HOH A 56 1956 4 HOH HOH . 
M 6 HOH A 57 1957 87 HOH HOH . 
M 6 HOH A 58 1958 91 HOH HOH . 
M 6 HOH A 59 1959 341 HOH HOH . 
M 6 HOH A 60 1960 131 HOH HOH . 
M 6 HOH A 61 1961 130 HOH HOH . 
M 6 HOH A 62 1962 347 HOH HOH . 
M 6 HOH A 63 1963 54 HOH HOH . 
M 6 HOH A 64 1964 304 HOH HOH . 
M 6 HOH A 65 1965 78 HOH HOH . 
M 6 HOH A 66 1966 1 HOH HOH . 
M 6 HOH A 67 1967 90 HOH HOH . 
M 6 HOH A 68 1968 128 HOH HOH . 
M 6 HOH A 69 1969 353 HOH HOH . 
M 6 HOH A 70 1970 97 HOH HOH . 
M 6 HOH A 71 1971 9 HOH HOH . 
M 6 HOH A 72 1972 333 HOH HOH . 
M 6 HOH A 73 1973 336 HOH HOH . 
M 6 HOH A 74 1974 321 HOH HOH . 
M 6 HOH A 75 1975 138 HOH HOH . 
M 6 HOH A 76 1976 196 HOH HOH . 
M 6 HOH A 77 1977 94 HOH HOH . 
M 6 HOH A 78 1978 155 HOH HOH . 
M 6 HOH A 79 1979 170 HOH HOH . 
M 6 HOH A 80 1980 172 HOH HOH . 
M 6 HOH A 81 1981 323 HOH HOH . 
N 6 HOH B 1 1901 330 HOH HOH . 
N 6 HOH B 2 1902 328 HOH HOH . 
N 6 HOH B 3 1903 352 HOH HOH . 
N 6 HOH B 4 1904 329 HOH HOH . 
N 6 HOH B 5 1905 183 HOH HOH . 
N 6 HOH B 6 1906 36 HOH HOH . 
N 6 HOH B 7 1907 26 HOH HOH . 
N 6 HOH B 8 1908 146 HOH HOH . 
N 6 HOH B 9 1909 325 HOH HOH . 
N 6 HOH B 10 1910 335 HOH HOH . 
N 6 HOH B 11 1911 61 HOH HOH . 
N 6 HOH B 12 1912 82 HOH HOH . 
N 6 HOH B 13 1913 106 HOH HOH . 
N 6 HOH B 14 1914 103 HOH HOH . 
N 6 HOH B 15 1915 129 HOH HOH . 
N 6 HOH B 16 1916 334 HOH HOH . 
N 6 HOH B 17 1917 30 HOH HOH . 
N 6 HOH B 18 1918 18 HOH HOH . 
N 6 HOH B 19 1919 10 HOH HOH . 
N 6 HOH B 20 1920 20 HOH HOH . 
N 6 HOH B 21 1921 119 HOH HOH . 
N 6 HOH B 22 1922 145 HOH HOH . 
N 6 HOH B 23 1923 22 HOH HOH . 
N 6 HOH B 24 1924 346 HOH HOH . 
N 6 HOH B 25 1925 49 HOH HOH . 
N 6 HOH B 26 1926 332 HOH HOH . 
N 6 HOH B 27 1927 331 HOH HOH . 
N 6 HOH B 28 1928 38 HOH HOH . 
N 6 HOH B 29 1929 108 HOH HOH . 
N 6 HOH B 30 1930 70 HOH HOH . 
N 6 HOH B 31 1931 60 HOH HOH . 
N 6 HOH B 32 1932 326 HOH HOH . 
N 6 HOH B 33 1933 31 HOH HOH . 
N 6 HOH B 34 1934 35 HOH HOH . 
N 6 HOH B 35 1935 37 HOH HOH . 
N 6 HOH B 36 1936 349 HOH HOH . 
N 6 HOH B 37 1937 67 HOH HOH . 
N 6 HOH B 38 1938 112 HOH HOH . 
N 6 HOH B 39 1939 100 HOH HOH . 
N 6 HOH B 40 1940 63 HOH HOH . 
N 6 HOH B 41 1941 118 HOH HOH . 
N 6 HOH B 42 1942 76 HOH HOH . 
N 6 HOH B 43 1943 32 HOH HOH . 
N 6 HOH B 44 1944 89 HOH HOH . 
N 6 HOH B 45 1945 327 HOH HOH . 
N 6 HOH B 46 1946 309 HOH HOH . 
N 6 HOH B 47 1947 62 HOH HOH . 
N 6 HOH B 48 1948 198 HOH HOH . 
N 6 HOH B 49 1949 319 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . H 2 -23.397 61.743 76.124 1 55.3 ? C1 EDO 1801 B 1 
HETATM 2 O O1 EDO . . . H 2 -22.399 60.962 75.455 1 56.08 ? O1 EDO 1801 B 1 
HETATM 3 C C2 EDO . . . H 2 -24.345 62.373 75.109 1 55.22 ? C2 EDO 1801 B 1 
HETATM 4 O O2 EDO . . . H 2 -24.969 61.374 74.29 1 54.47 ? O2 EDO 1801 B 1 
HETATM 5 H H11 EDO . . . H 2 -22.916 62.527 76.712 1 66.4 ? H11 EDO 1801 B 1 
HETATM 6 H H12 EDO . . . H 2 -23.963 61.106 76.807 1 66.4 ? H12 EDO 1801 B 1 
HETATM 7 H HO1 EDO . . . H 2 -21.806 60.568 76.109 1 67.33 ? HO1 EDO 1801 B 1 
HETATM 8 H H21 EDO . . . H 2 -23.789 63.066 74.475 1 66.3 ? H21 EDO 1801 B 1 
HETATM 9 H H22 EDO . . . H 2 -25.113 62.944 75.635 1 66.3 ? H22 EDO 1801 B 1 
HETATM 10 H HO2 EDO . . . H 2 -25.563 61.801 73.658 1 65.4 ? HO2 EDO 1801 B 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    34 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           10 
#