data_6RBO # _model_server_result.job_id A3-8eDkysQ9uN0OVINI3TQ _model_server_result.datetime_utc '2024-11-13 18:42:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rbo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 6RBO # _exptl.entry_id 6RBO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 215.254 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 9-hex-5-ynylpurin-6-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RBO _cell.length_a 62.738 _cell.length_b 75.669 _cell.length_c 118.724 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RBO _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 62.738 0 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 62.738 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H13 N5' _chem_comp.formula_weight 215.254 _chem_comp.id JXQ _chem_comp.mon_nstd_flag . _chem_comp.name 9-hex-5-ynylpurin-6-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N6 C6 JXQ sing 193 n n C9D C9C JXQ sing 194 n n C9D C9E JXQ sing 195 n n C6 N1 JXQ doub 196 n y C6 C5 JXQ sing 197 n y N1 C2 JXQ sing 198 n y C9C C9B JXQ sing 199 n n N7 C5 JXQ sing 200 n y N7 C8 JXQ doub 201 n y C5 C4 JXQ doub 202 n y C9E C9F JXQ trip 203 n n C2 N3 JXQ doub 204 n y C8 N9 JXQ sing 205 n y C4 N3 JXQ sing 206 n y C4 N9 JXQ sing 207 n y N9 C9A JXQ sing 208 n n C9B C9A JXQ sing 209 n n C2 H1 JXQ sing 210 n n C8 H2 JXQ sing 211 n n C9A H3 JXQ sing 212 n n C9A H4 JXQ sing 213 n n C9B H5 JXQ sing 214 n n C9B H6 JXQ sing 215 n n C9C H7 JXQ sing 216 n n C9C H8 JXQ sing 217 n n C9D H9 JXQ sing 218 n n C9D H10 JXQ sing 219 n n C9F H11 JXQ sing 220 n n N6 H12 JXQ sing 221 n n N6 H13 JXQ sing 222 n n # _atom_sites.entry_id 6RBO _atom_sites.fract_transf_matrix[1][1] 0.015939 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013215 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008423 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CIT A 1 301 265 CIT CIT . C 3 JXQ A 1 302 1 JXQ A94 . D 4 HOH A 1 401 35 HOH HOH . D 4 HOH A 2 402 1 HOH HOH . D 4 HOH A 3 403 44 HOH HOH . D 4 HOH A 4 404 6 HOH HOH . D 4 HOH A 5 405 13 HOH HOH . D 4 HOH A 6 406 14 HOH HOH . D 4 HOH A 7 407 59 HOH HOH . D 4 HOH A 8 408 17 HOH HOH . D 4 HOH A 9 409 12 HOH HOH . D 4 HOH A 10 410 3 HOH HOH . D 4 HOH A 11 411 15 HOH HOH . D 4 HOH A 12 412 2 HOH HOH . D 4 HOH A 13 413 16 HOH HOH . D 4 HOH A 14 414 7 HOH HOH . D 4 HOH A 15 415 60 HOH HOH . D 4 HOH A 16 416 23 HOH HOH . D 4 HOH A 17 417 46 HOH HOH . D 4 HOH A 18 418 5 HOH HOH . D 4 HOH A 19 419 9 HOH HOH . D 4 HOH A 20 420 58 HOH HOH . D 4 HOH A 21 421 19 HOH HOH . D 4 HOH A 22 422 42 HOH HOH . D 4 HOH A 23 423 8 HOH HOH . D 4 HOH A 24 424 11 HOH HOH . D 4 HOH A 25 425 24 HOH HOH . D 4 HOH A 26 426 29 HOH HOH . D 4 HOH A 27 427 20 HOH HOH . D 4 HOH A 28 428 38 HOH HOH . D 4 HOH A 29 429 30 HOH HOH . D 4 HOH A 30 430 10 HOH HOH . D 4 HOH A 31 431 31 HOH HOH . D 4 HOH A 32 432 39 HOH HOH . D 4 HOH A 33 433 37 HOH HOH . D 4 HOH A 34 434 25 HOH HOH . D 4 HOH A 35 435 36 HOH HOH . D 4 HOH A 36 436 28 HOH HOH . D 4 HOH A 37 437 47 HOH HOH . D 4 HOH A 38 438 54 HOH HOH . D 4 HOH A 39 439 18 HOH HOH . D 4 HOH A 40 440 57 HOH HOH . D 4 HOH A 41 441 4 HOH HOH . D 4 HOH A 42 442 32 HOH HOH . D 4 HOH A 43 443 43 HOH HOH . D 4 HOH A 44 444 33 HOH HOH . D 4 HOH A 45 445 51 HOH HOH . D 4 HOH A 46 446 48 HOH HOH . D 4 HOH A 47 447 22 HOH HOH . D 4 HOH A 48 448 40 HOH HOH . D 4 HOH A 49 449 34 HOH HOH . D 4 HOH A 50 450 61 HOH HOH . D 4 HOH A 51 451 27 HOH HOH . D 4 HOH A 52 452 63 HOH HOH . D 4 HOH A 53 453 55 HOH HOH . D 4 HOH A 54 454 49 HOH HOH . D 4 HOH A 55 455 64 HOH HOH . D 4 HOH A 56 456 65 HOH HOH . D 4 HOH A 57 457 50 HOH HOH . D 4 HOH A 58 458 62 HOH HOH . D 4 HOH A 59 459 52 HOH HOH . D 4 HOH A 60 460 41 HOH HOH . D 4 HOH A 61 461 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 JXQ . . . C 3 19.836 12.416 12.294 1 90.77 ? C5 JXQ 302 A 1 HETATM 2 C C6 JXQ . . . C 3 20.919 13.124 11.786 1 88.33 ? C6 JXQ 302 A 1 HETATM 3 C C2 JXQ . . . C 3 22.355 11.55 12.706 1 87.73 ? C2 JXQ 302 A 1 HETATM 4 C C4 JXQ . . . C 3 20.091 11.268 13.021 1 91.03 ? C4 JXQ 302 A 1 HETATM 5 C C8 JXQ . . . C 3 17.941 11.574 12.929 1 91.05 ? C8 JXQ 302 A 1 HETATM 6 C C9A JXQ . . . C 3 18.761 9.553 14.175 1 92.77 ? C9A JXQ 302 A 1 HETATM 7 C C9B JXQ . . . C 3 17.568 8.718 13.707 1 93.15 ? C9B JXQ 302 A 1 HETATM 8 C C9C JXQ . . . C 3 17.778 8.296 12.247 1 93.6 ? C9C JXQ 302 A 1 HETATM 9 C C9D JXQ . . . C 3 16.631 7.432 11.727 1 92.3 ? C9D JXQ 302 A 1 HETATM 10 C C9E JXQ . . . C 3 16.521 6.203 12.521 1 90.35 ? C9E JXQ 302 A 1 HETATM 11 C C9F JXQ . . . C 3 16.441 5.22 13.15 1 89.19 ? C9F JXQ 302 A 1 HETATM 12 N N1 JXQ . . . C 3 22.157 12.662 12.013 1 87.87 ? N1 JXQ 302 A 1 HETATM 13 N N3 JXQ . . . C 3 21.351 10.853 13.205 1 89.33 ? N3 JXQ 302 A 1 HETATM 14 N N6 JXQ . . . C 3 20.743 14.24 11.085 1 85.45 ? N6 JXQ 302 A 1 HETATM 15 N N7 JXQ . . . C 3 18.511 12.581 12.259 1 90.65 ? N7 JXQ 302 A 1 HETATM 16 N N9 JXQ . . . C 3 18.914 10.772 13.364 1 91.57 ? N9 JXQ 302 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #