data_6RBP # _model_server_result.job_id JEqyOPFnZi04kEE2JqXsqQ _model_server_result.datetime_utc '2025-02-16 14:59:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rbp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6RBP # _exptl.entry_id 6RBP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 232.245 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 9-(4-azidobutyl)purin-6-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RBP _cell.length_a 62.97 _cell.length_b 74.67 _cell.length_c 118.88 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RBP _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 1 2 A,B,C,D 1 3 A,B,C,D 1 4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 62.97 0 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 62.97 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H12 N8' _chem_comp.formula_weight 232.245 _chem_comp.id JYN _chem_comp.mon_nstd_flag . _chem_comp.name 9-(4-azidobutyl)purin-6-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NAA NAM JYN doub 193 n n N6 C6 JYN sing 194 n n NAM NAI JYN doub 195 n n C6 N1 JYN doub 196 n y C6 C5 JYN sing 197 n y N1 C2 JYN sing 198 n y N7 C5 JYN sing 199 n y N7 C8 JYN doub 200 n y C5 C4 JYN doub 201 n y C2 N3 JYN doub 202 n y NAI CAG JYN sing 203 n n C8 N9 JYN sing 204 n y CAG CAE JYN sing 205 n n C4 N3 JYN sing 206 n y C4 N9 JYN sing 207 n y N9 CAH JYN sing 208 n n CAE CAF JYN sing 209 n n CAF CAH JYN sing 210 n n C2 H1 JYN sing 211 n n C8 H2 JYN sing 212 n n CAE H3 JYN sing 213 n n CAE H4 JYN sing 214 n n CAF H5 JYN sing 215 n n CAF H6 JYN sing 216 n n CAG H7 JYN sing 217 n n CAG H8 JYN sing 218 n n CAH H9 JYN sing 219 n n CAH H10 JYN sing 220 n n N6 H11 JYN sing 221 n n N6 H12 JYN sing 222 n n # _atom_sites.entry_id 6RBP _atom_sites.fract_transf_matrix[1][1] 0.015881 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013392 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008412 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JYN A 1 301 1 JYN 94N . C 3 CIT A 1 302 1 CIT CIT . D 4 HOH A 1 401 323 HOH HOH . D 4 HOH A 2 402 23 HOH HOH . D 4 HOH A 3 403 115 HOH HOH . D 4 HOH A 4 404 101 HOH HOH . D 4 HOH A 5 405 313 HOH HOH . D 4 HOH A 6 406 301 HOH HOH . D 4 HOH A 7 407 318 HOH HOH . D 4 HOH A 8 408 113 HOH HOH . D 4 HOH A 9 409 321 HOH HOH . D 4 HOH A 10 410 322 HOH HOH . D 4 HOH A 11 411 315 HOH HOH . D 4 HOH A 12 412 110 HOH HOH . D 4 HOH A 13 413 102 HOH HOH . D 4 HOH A 14 414 308 HOH HOH . D 4 HOH A 15 415 106 HOH HOH . D 4 HOH A 16 416 103 HOH HOH . D 4 HOH A 17 417 105 HOH HOH . D 4 HOH A 18 418 112 HOH HOH . D 4 HOH A 19 419 320 HOH HOH . D 4 HOH A 20 420 305 HOH HOH . D 4 HOH A 21 421 303 HOH HOH . D 4 HOH A 22 422 312 HOH HOH . D 4 HOH A 23 423 319 HOH HOH . D 4 HOH A 24 424 54 HOH HOH . D 4 HOH A 25 425 171 HOH HOH . D 4 HOH A 26 426 316 HOH HOH . D 4 HOH A 27 427 309 HOH HOH . D 4 HOH A 28 428 117 HOH HOH . D 4 HOH A 29 429 104 HOH HOH . D 4 HOH A 30 430 182 HOH HOH . D 4 HOH A 31 431 108 HOH HOH . D 4 HOH A 32 432 304 HOH HOH . D 4 HOH A 33 433 306 HOH HOH . D 4 HOH A 34 434 311 HOH HOH . D 4 HOH A 35 435 310 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 JYN . . . B 2 22.375 12.177 12.678 1 60.06 ? C2 JYN 301 A 1 HETATM 2 C C4 JYN . . . B 2 20.116 11.804 12.944 1 65.25 ? C4 JYN 301 A 1 HETATM 3 C C5 JYN . . . B 2 19.836 12.951 12.223 1 64.5 ? C5 JYN 301 A 1 HETATM 4 C C6 JYN . . . B 2 20.896 13.709 11.748 1 61.13 ? C6 JYN 301 A 1 HETATM 5 C C8 JYN . . . B 2 17.968 12.042 12.799 1 64.62 ? C8 JYN 301 A 1 HETATM 6 C CAE JYN . . . B 2 16.345 9.457 13.427 0.8 52.46 ? CAE JYN 301 A 1 HETATM 7 C CAF JYN . . . B 2 17.796 8.981 13.525 0.9 50.83 ? CAF JYN 301 A 1 HETATM 8 C CAG JYN . . . B 2 15.449 8.346 12.882 0.7 54.29 ? CAG JYN 301 A 1 HETATM 9 C CAH JYN . . . B 2 18.82 10.013 14.049 1 56.15 ? CAH JYN 301 A 1 HETATM 10 N N1 JYN . . . B 2 22.146 13.29 11.997 1 62.67 ? N1 JYN 301 A 1 HETATM 11 N N3 JYN . . . B 2 21.388 11.435 13.146 1 61.53 ? N3 JYN 301 A 1 HETATM 12 N N6 JYN . . . B 2 20.682 14.828 11.06 1 59.01 ? N6 JYN 301 A 1 HETATM 13 N N7 JYN . . . B 2 18.513 13.075 12.156 1 64.79 ? N7 JYN 301 A 1 HETATM 14 N N9 JYN . . . B 2 18.948 11.252 13.242 1 64.67 ? N9 JYN 301 A 1 HETATM 15 N NAA JYN . . . B 2 13.454 10.104 10.562 0.6 55.43 ? NAA JYN 301 A 1 HETATM 16 N NAI JYN . . . B 2 14.077 8.852 12.759 0.6 53.49 ? NAI JYN 301 A 1 HETATM 17 N NAM JYN . . . B 2 13.756 9.479 11.664 0.6 55.2 ? NAM JYN 301 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 17 #