data_6RBQ # _model_server_result.job_id fLniVejRCB14LhbFDPjqTg _model_server_result.datetime_utc '2024-11-24 23:48:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rbq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 6RBQ # _exptl.entry_id 6RBQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 265.335 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '~{S}-[4-(6-aminopurin-9-yl)butyl] ethanethioate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RBQ _cell.length_a 61.992 _cell.length_b 76.354 _cell.length_c 118.11 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RBQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 61.992 0 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 61.992 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H15 N5 O S' _chem_comp.formula_weight 265.335 _chem_comp.id JYQ _chem_comp.mon_nstd_flag . _chem_comp.name '~{S}-[4-(6-aminopurin-9-yl)butyl] ethanethioate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAC CAN JYQ doub 193 n n CAN SAM JYQ sing 194 n n CAN CAA JYQ sing 195 n n SAM CAH JYQ sing 196 n n N6 C6 JYQ sing 197 n n CAH CAF JYQ sing 198 n n C6 N1 JYQ doub 199 n y C6 C5 JYQ sing 200 n y CAF CAG JYQ sing 201 n n N1 C2 JYQ sing 202 n y N7 C5 JYQ sing 203 n y N7 C8 JYQ doub 204 n y C5 C4 JYQ doub 205 n y C2 N3 JYQ doub 206 n y C8 N9 JYQ sing 207 n y C4 N3 JYQ sing 208 n y C4 N9 JYQ sing 209 n y N9 CAI JYQ sing 210 n n CAG CAI JYQ sing 211 n n C8 H1 JYQ sing 212 n n C2 H2 JYQ sing 213 n n N6 H3 JYQ sing 214 n n N6 H4 JYQ sing 215 n n CAA H5 JYQ sing 216 n n CAA H6 JYQ sing 217 n n CAA H7 JYQ sing 218 n n CAF H8 JYQ sing 219 n n CAF H9 JYQ sing 220 n n CAG H10 JYQ sing 221 n n CAG H11 JYQ sing 222 n n CAH H12 JYQ sing 223 n n CAH H13 JYQ sing 224 n n CAI H14 JYQ sing 225 n n CAI H15 JYQ sing 226 n n # _atom_sites.entry_id 6RBQ _atom_sites.fract_transf_matrix[1][1] 0.016131 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013097 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008467 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CIT A 1 301 265 CIT CIT . C 3 JYQ A 1 302 1 JYQ 94S . D 4 HOH A 1 401 26 HOH HOH . D 4 HOH A 2 402 6 HOH HOH . D 4 HOH A 3 403 1 HOH HOH . D 4 HOH A 4 404 30 HOH HOH . D 4 HOH A 5 405 18 HOH HOH . D 4 HOH A 6 406 5 HOH HOH . D 4 HOH A 7 407 13 HOH HOH . D 4 HOH A 8 408 28 HOH HOH . D 4 HOH A 9 409 12 HOH HOH . D 4 HOH A 10 410 32 HOH HOH . D 4 HOH A 11 411 33 HOH HOH . D 4 HOH A 12 412 2 HOH HOH . D 4 HOH A 13 413 21 HOH HOH . D 4 HOH A 14 414 22 HOH HOH . D 4 HOH A 15 415 37 HOH HOH . D 4 HOH A 16 416 10 HOH HOH . D 4 HOH A 17 417 7 HOH HOH . D 4 HOH A 18 418 42 HOH HOH . D 4 HOH A 19 419 44 HOH HOH . D 4 HOH A 20 420 8 HOH HOH . D 4 HOH A 21 421 17 HOH HOH . D 4 HOH A 22 422 34 HOH HOH . D 4 HOH A 23 423 25 HOH HOH . D 4 HOH A 24 424 11 HOH HOH . D 4 HOH A 25 425 3 HOH HOH . D 4 HOH A 26 426 23 HOH HOH . D 4 HOH A 27 427 20 HOH HOH . D 4 HOH A 28 428 4 HOH HOH . D 4 HOH A 29 429 15 HOH HOH . D 4 HOH A 30 430 19 HOH HOH . D 4 HOH A 31 431 43 HOH HOH . D 4 HOH A 32 432 9 HOH HOH . D 4 HOH A 33 433 16 HOH HOH . D 4 HOH A 34 434 31 HOH HOH . D 4 HOH A 35 435 41 HOH HOH . D 4 HOH A 36 436 35 HOH HOH . D 4 HOH A 37 437 40 HOH HOH . D 4 HOH A 38 438 29 HOH HOH . D 4 HOH A 39 439 24 HOH HOH . D 4 HOH A 40 440 36 HOH HOH . D 4 HOH A 41 441 38 HOH HOH . D 4 HOH A 42 442 14 HOH HOH . D 4 HOH A 43 443 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 JYQ . . . C 3 19.242 12.984 12.182 1 47.53 ? C5 JYQ 302 A 1 HETATM 2 C C8 JYQ . . . C 3 17.18 12.68 12.74 1 47.85 ? C8 JYQ 302 A 1 HETATM 3 C C2 JYQ . . . C 3 21.429 11.459 12.542 1 48.3 ? C2 JYQ 302 A 1 HETATM 4 N N3 JYQ . . . C 3 20.261 11.028 12.996 1 50.93 ? N3 JYQ 302 A 1 HETATM 5 N N6 JYQ . . . C 3 20.603 14.573 11.094 1 40.52 ? N6 JYQ 302 A 1 HETATM 6 N N7 JYQ . . . C 3 18.025 13.521 12.143 1 47.38 ? N7 JYQ 302 A 1 HETATM 7 C C4 JYQ . . . C 3 19.15 11.759 12.819 1 48.85 ? C4 JYQ 302 A 1 HETATM 8 C C6 JYQ . . . C 3 20.48 13.406 11.721 1 44.78 ? C6 JYQ 302 A 1 HETATM 9 C CAA JYQ . . . C 3 17.527 4.576 10.17 0.7 62.34 ? CAA JYQ 302 A 1 HETATM 10 C CAF JYQ . . . C 3 17.456 8.939 11.897 0.8 60.56 ? CAF JYQ 302 A 1 HETATM 11 C CAG JYQ . . . C 3 17.767 9.123 13.385 1 58.27 ? CAG JYQ 302 A 1 HETATM 12 C CAH JYQ . . . C 3 17.928 7.582 11.371 0.8 63.58 ? CAH JYQ 302 A 1 HETATM 13 C CAI JYQ . . . C 3 17.246 10.484 13.861 1 56.03 ? CAI JYQ 302 A 1 HETATM 14 C CAN JYQ . . . C 3 18.119 5.723 9.347 0.6 63.47 ? CAN JYQ 302 A 1 HETATM 15 N N1 JYQ . . . C 3 21.548 12.621 11.919 1 47.35 ? N1 JYQ 302 A 1 HETATM 16 N N9 JYQ . . . C 3 17.872 11.627 13.169 1 49.59 ? N9 JYQ 302 A 1 HETATM 17 O OAC JYQ . . . C 3 18.987 5.509 8.503 0.6 59.01 ? OAC JYQ 302 A 1 HETATM 18 S SAM JYQ . . . C 3 17.537 7.354 9.597 0.6 67.12 ? SAM JYQ 302 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #