data_6RBS # _model_server_result.job_id ovqRDt0oVGylRcqHcXnn_Q _model_server_result.datetime_utc '2024-11-28 17:15:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rbs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 6RBS # _exptl.entry_id 6RBS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 280.124 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 8-bromanyl-9-pent-4-ynyl-purin-6-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RBS _cell.length_a 62.526 _cell.length_b 76.541 _cell.length_c 118.385 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RBS _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 1 2 A,B,C,D 1 3 A,B,C,D 1 4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 62.526 0 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 62.526 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H10 Br N5' _chem_comp.formula_weight 280.124 _chem_comp.id JXT _chem_comp.mon_nstd_flag . _chem_comp.name 8-bromanyl-9-pent-4-ynyl-purin-6-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N6 C6 JXT sing 193 n n C6 N1 JXT doub 194 n y C6 C5 JXT sing 195 n y N1 C2 JXT sing 196 n y N7 C5 JXT sing 197 n y N7 C8 JXT doub 198 n y C5 C4 JXT doub 199 n y C2 N3 JXT doub 200 n y C8 BR8 JXT sing 201 n n C8 N9 JXT sing 202 n y C4 N3 JXT sing 203 n y C4 N9 JXT sing 204 n y CAG CAF JXT sing 205 n n CAG CAH JXT sing 206 n n N9 CAH JXT sing 207 n n CAF CAD JXT sing 208 n n CAD CAA JXT trip 209 n n C2 H1 JXT sing 210 n n N6 H2 JXT sing 211 n n N6 H3 JXT sing 212 n n CAA H4 JXT sing 213 n n CAF H5 JXT sing 214 n n CAF H6 JXT sing 215 n n CAG H7 JXT sing 216 n n CAG H8 JXT sing 217 n n CAH H9 JXT sing 218 n n CAH H10 JXT sing 219 n n # _atom_sites.entry_id 6RBS _atom_sites.fract_transf_matrix[1][1] 0.015993 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013065 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008447 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CIT A 1 301 265 CIT CIT . C 3 JXT A 1 302 1 JXT B3C . D 4 HOH A 1 401 3 HOH HOH . D 4 HOH A 2 402 10 HOH HOH . D 4 HOH A 3 403 15 HOH HOH . D 4 HOH A 4 404 6 HOH HOH . D 4 HOH A 5 405 5 HOH HOH . D 4 HOH A 6 406 4 HOH HOH . D 4 HOH A 7 407 8 HOH HOH . D 4 HOH A 8 408 1 HOH HOH . D 4 HOH A 9 409 2 HOH HOH . D 4 HOH A 10 410 32 HOH HOH . D 4 HOH A 11 411 17 HOH HOH . D 4 HOH A 12 412 21 HOH HOH . D 4 HOH A 13 413 24 HOH HOH . D 4 HOH A 14 414 26 HOH HOH . D 4 HOH A 15 415 9 HOH HOH . D 4 HOH A 16 416 20 HOH HOH . D 4 HOH A 17 417 13 HOH HOH . D 4 HOH A 18 418 29 HOH HOH . D 4 HOH A 19 419 31 HOH HOH . D 4 HOH A 20 420 28 HOH HOH . D 4 HOH A 21 421 25 HOH HOH . D 4 HOH A 22 422 30 HOH HOH . D 4 HOH A 23 423 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 JXT . . . C 3 19.713 12.802 12.188 1 78.96 ? C5 JXT 302 A 1 HETATM 2 C C4 JXT . . . C 3 19.852 11.587 12.845 1 78.42 ? C4 JXT 302 A 1 HETATM 3 C C2 JXT . . . C 3 22.135 11.707 12.592 1 66.56 ? C2 JXT 302 A 1 HETATM 4 N N6 JXT . . . C 3 20.77 14.615 11.11 1 60.35 ? N6 JXT 302 A 1 HETATM 5 C C6 JXT . . . C 3 20.855 13.448 11.742 1 65.39 ? C6 JXT 302 A 1 HETATM 6 C C8 JXT . . . C 3 17.762 12.097 12.73 1 90.02 ? C8 JXT 302 A 1 HETATM 7 C CAA JXT . . . C 3 19.639 6.748 15.332 1 91.23 ? CAA JXT 302 A 1 HETATM 8 C CAD JXT . . . C 3 18.851 7.069 14.522 1 90.77 ? CAD JXT 302 A 1 HETATM 9 C CAF JXT . . . C 3 17.818 7.473 13.55 1 89.04 ? CAF JXT 302 A 1 HETATM 10 C CAG JXT . . . C 3 18.149 8.798 12.849 1 86.43 ? CAG JXT 302 A 1 HETATM 11 C CAH JXT . . . C 3 18.306 9.933 13.867 1 83.5 ? CAH JXT 302 A 1 HETATM 12 N N1 JXT . . . C 3 22.045 12.873 11.963 1 64.62 ? N1 JXT 302 A 1 HETATM 13 N N3 JXT . . . C 3 21.069 11.062 13.033 1 68.41 ? N3 JXT 302 A 1 HETATM 14 N N7 JXT . . . C 3 18.412 13.094 12.132 1 82.08 ? N7 JXT 302 A 1 HETATM 15 N N9 JXT . . . C 3 18.628 11.185 13.158 1 81.49 ? N9 JXT 302 A 1 HETATM 16 BR BR8 JXT . . . C 3 15.879 12.001 12.931 1 133.06 ? BR8 JXT 302 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 16 #