data_6RBT # _model_server_result.job_id RYRgGpRM7_CenNrWSHaoIw _model_server_result.datetime_utc '2024-12-01 10:42:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rbt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 6RBT # _exptl.entry_id 6RBT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 349.025 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 8-bromanyl-9-(4-bromanylbutyl)purin-6-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RBT _cell.length_a 62.521 _cell.length_b 76.178 _cell.length_c 117.998 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RBT _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 62.521 0 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 62.521 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H11 Br2 N5' _chem_comp.formula_weight 349.025 _chem_comp.id JXE _chem_comp.mon_nstd_flag . _chem_comp.name 8-bromanyl-9-(4-bromanylbutyl)purin-6-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N01 C02 JXE sing 193 n n C02 C07 JXE doub 194 n y C02 N03 JXE sing 195 n y N08 C07 JXE sing 196 n y N08 C09 JXE doub 197 n y C07 C06 JXE sing 198 n y N03 C04 JXE doub 199 n y BR1 C09 JXE sing 200 n n C09 N11 JXE sing 201 n y C06 N11 JXE sing 202 n y C06 N05 JXE doub 203 n y C04 N05 JXE sing 204 n y N11 C12 JXE sing 205 n n C12 C13 JXE sing 206 n n C13 C14 JXE sing 207 n n C14 C15 JXE sing 208 n n C15 BR2 JXE sing 209 n n C13 H1 JXE sing 210 n n C13 H2 JXE sing 211 n n C15 H3 JXE sing 212 n n C15 H4 JXE sing 213 n n C04 H5 JXE sing 214 n n C12 H6 JXE sing 215 n n C12 H7 JXE sing 216 n n C14 H8 JXE sing 217 n n C14 H9 JXE sing 218 n n N01 H10 JXE sing 219 n n N01 H11 JXE sing 220 n n # _atom_sites.entry_id 6RBT _atom_sites.fract_transf_matrix[1][1] 0.015995 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013127 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008475 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CIT A 1 301 265 CIT CIT . C 3 JXE A 1 302 1 JXE LIG . D 4 HOH A 1 401 8 HOH HOH . D 4 HOH A 2 402 7 HOH HOH . D 4 HOH A 3 403 2 HOH HOH . D 4 HOH A 4 404 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 JXE . . . C 3 16.536 10.449 15.508 1 156.32 ? C13 JXE 302 A 1 HETATM 2 C C15 JXE . . . C 3 15.383 9.248 17.458 1 160.22 ? C15 JXE 302 A 1 HETATM 3 C C02 JXE . . . C 3 20.761 12.851 11.975 1 149.31 ? C02 JXE 302 A 1 HETATM 4 C C04 JXE . . . C 3 21.657 11.227 13.425 1 149.52 ? C04 JXE 302 A 1 HETATM 5 C C06 JXE . . . C 3 19.415 11.26 13.278 1 151.02 ? C06 JXE 302 A 1 HETATM 6 C C07 JXE . . . C 3 19.458 12.349 12.338 1 150.8 ? C07 JXE 302 A 1 HETATM 7 C C09 JXE . . . C 3 17.362 11.849 12.659 1 151.99 ? C09 JXE 302 A 1 HETATM 8 C C12 JXE . . . C 3 17.434 9.887 14.36 1 154.24 ? C12 JXE 302 A 1 HETATM 9 C C14 JXE . . . C 3 16.699 9.753 16.884 1 158.15 ? C14 JXE 302 A 1 HETATM 10 N N01 JXE . . . C 3 20.966 13.902 11.077 1 148.41 ? N01 JXE 302 A 1 HETATM 11 N N03 JXE . . . C 3 21.858 12.268 12.537 1 149.22 ? N03 JXE 302 A 1 HETATM 12 N N05 JXE . . . C 3 20.508 10.672 13.845 1 150.08 ? N05 JXE 302 A 1 HETATM 13 N N08 JXE . . . C 3 18.139 12.686 11.977 1 151.19 ? N08 JXE 302 A 1 HETATM 14 N N11 JXE . . . C 3 18.033 10.918 13.499 1 152.38 ? N11 JXE 302 A 1 HETATM 15 BR BR1 JXE . . . C 3 15.447 11.823 12.576 1 153.72 ? BR1 JXE 302 A 1 HETATM 16 BR BR2 JXE . . . C 3 14.291 10.753 18.292 1 162.26 ? BR2 JXE 302 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #