data_6RBU # _model_server_result.job_id 72_g18SY8pyl3CuyMYZNEQ _model_server_result.datetime_utc '2025-02-17 23:58:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rbu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 6RBU # _exptl.entry_id 6RBU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 283.088 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 9-(2-azidoethyl)-8-bromanyl-purin-6-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RBU _cell.length_a 62.552 _cell.length_b 75.988 _cell.length_c 118.247 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RBU _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 1 2 A,B,C,D 1 3 A,B,C,D 1 4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 62.552 0 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 62.552 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C7 H7 Br N8' _chem_comp.formula_weight 283.088 _chem_comp.id JYK _chem_comp.mon_nstd_flag . _chem_comp.name 9-(2-azidoethyl)-8-bromanyl-purin-6-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N5 C4 JYK sing 193 n n C4 N6 JYK doub 194 n y C4 C3 JYK sing 195 n y N N1 JYK doub 196 n n N6 C5 JYK sing 197 n y N4 C3 JYK sing 198 n y N4 C2 JYK doub 199 n y C3 C6 JYK doub 200 n y C5 N7 JYK doub 201 n y N1 N2 JYK doub 202 n n C2 BR JYK sing 203 n n C2 N3 JYK sing 204 n y C6 N7 JYK sing 205 n y C6 N3 JYK sing 206 n y N3 C1 JYK sing 207 n n N2 C JYK sing 208 n n C C1 JYK sing 209 n n C H2 JYK sing 210 n n C H3 JYK sing 211 n n C1 H4 JYK sing 212 n n C1 H5 JYK sing 213 n n C5 H6 JYK sing 214 n n N5 H7 JYK sing 215 n n N5 H8 JYK sing 216 n n # _atom_sites.entry_id 6RBU _atom_sites.fract_transf_matrix[1][1] 0.015987 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01316 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008457 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CIT A 1 301 265 CIT CIT . C 3 JYK A 1 302 1 JYK B2N . D 4 HOH A 1 401 11 HOH HOH . D 4 HOH A 2 402 26 HOH HOH . D 4 HOH A 3 403 32 HOH HOH . D 4 HOH A 4 404 39 HOH HOH . D 4 HOH A 5 405 41 HOH HOH . D 4 HOH A 6 406 86 HOH HOH . D 4 HOH A 7 407 22 HOH HOH . D 4 HOH A 8 408 85 HOH HOH . D 4 HOH A 9 409 12 HOH HOH . D 4 HOH A 10 410 33 HOH HOH . D 4 HOH A 11 411 67 HOH HOH . D 4 HOH A 12 412 2 HOH HOH . D 4 HOH A 13 413 34 HOH HOH . D 4 HOH A 14 414 43 HOH HOH . D 4 HOH A 15 415 35 HOH HOH . D 4 HOH A 16 416 1 HOH HOH . D 4 HOH A 17 417 15 HOH HOH . D 4 HOH A 18 418 10 HOH HOH . D 4 HOH A 19 419 63 HOH HOH . D 4 HOH A 20 420 23 HOH HOH . D 4 HOH A 21 421 3 HOH HOH . D 4 HOH A 22 422 80 HOH HOH . D 4 HOH A 23 423 9 HOH HOH . D 4 HOH A 24 424 7 HOH HOH . D 4 HOH A 25 425 13 HOH HOH . D 4 HOH A 26 426 18 HOH HOH . D 4 HOH A 27 427 78 HOH HOH . D 4 HOH A 28 428 61 HOH HOH . D 4 HOH A 29 429 21 HOH HOH . D 4 HOH A 30 430 56 HOH HOH . D 4 HOH A 31 431 88 HOH HOH . D 4 HOH A 32 432 17 HOH HOH . D 4 HOH A 33 433 4 HOH HOH . D 4 HOH A 34 434 8 HOH HOH . D 4 HOH A 35 435 19 HOH HOH . D 4 HOH A 36 436 20 HOH HOH . D 4 HOH A 37 437 77 HOH HOH . D 4 HOH A 38 438 36 HOH HOH . D 4 HOH A 39 439 58 HOH HOH . D 4 HOH A 40 440 83 HOH HOH . D 4 HOH A 41 441 5 HOH HOH . D 4 HOH A 42 442 28 HOH HOH . D 4 HOH A 43 443 31 HOH HOH . D 4 HOH A 44 444 55 HOH HOH . D 4 HOH A 45 445 30 HOH HOH . D 4 HOH A 46 446 24 HOH HOH . D 4 HOH A 47 447 6 HOH HOH . D 4 HOH A 48 448 42 HOH HOH . D 4 HOH A 49 449 25 HOH HOH . D 4 HOH A 50 450 68 HOH HOH . D 4 HOH A 51 451 72 HOH HOH . D 4 HOH A 52 452 48 HOH HOH . D 4 HOH A 53 453 45 HOH HOH . D 4 HOH A 54 454 54 HOH HOH . D 4 HOH A 55 455 40 HOH HOH . D 4 HOH A 56 456 66 HOH HOH . D 4 HOH A 57 457 87 HOH HOH . D 4 HOH A 58 458 69 HOH HOH . D 4 HOH A 59 459 51 HOH HOH . D 4 HOH A 60 460 49 HOH HOH . D 4 HOH A 61 461 47 HOH HOH . D 4 HOH A 62 462 14 HOH HOH . D 4 HOH A 63 463 44 HOH HOH . D 4 HOH A 64 464 79 HOH HOH . D 4 HOH A 65 465 84 HOH HOH . D 4 HOH A 66 466 65 HOH HOH . D 4 HOH A 67 467 57 HOH HOH . D 4 HOH A 68 468 37 HOH HOH . D 4 HOH A 69 469 64 HOH HOH . D 4 HOH A 70 470 53 HOH HOH . D 4 HOH A 71 471 29 HOH HOH . D 4 HOH A 72 472 52 HOH HOH . D 4 HOH A 73 473 46 HOH HOH . D 4 HOH A 74 474 75 HOH HOH . D 4 HOH A 75 475 71 HOH HOH . D 4 HOH A 76 476 90 HOH HOH . D 4 HOH A 77 477 70 HOH HOH . D 4 HOH A 78 478 59 HOH HOH . D 4 HOH A 79 479 16 HOH HOH . D 4 HOH A 80 480 89 HOH HOH . D 4 HOH A 81 481 60 HOH HOH . D 4 HOH A 82 482 62 HOH HOH . D 4 HOH A 83 483 27 HOH HOH . D 4 HOH A 84 484 82 HOH HOH . D 4 HOH A 85 485 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N JYK . . . C 3 19.894 7.404 11.637 1 101.99 ? N JYK 302 A 1 HETATM 2 C C JYK . . . C 3 18.216 8.916 14.041 1 100.24 ? C JYK 302 A 1 HETATM 3 C C1 JYK . . . C 3 18.479 10.349 14.455 1 99.13 ? C1 JYK 302 A 1 HETATM 4 C C2 JYK . . . C 3 17.752 12.118 12.787 1 95.07 ? C2 JYK 302 A 1 HETATM 5 C C3 JYK . . . C 3 19.634 12.851 12.171 1 96.54 ? C3 JYK 302 A 1 HETATM 6 C C4 JYK . . . C 3 20.741 13.533 11.627 1 95.49 ? C4 JYK 302 A 1 HETATM 7 C C5 JYK . . . C 3 22.061 11.85 12.512 1 94.78 ? C5 JYK 302 A 1 HETATM 8 C C6 JYK . . . C 3 19.894 11.686 12.865 1 96.67 ? C6 JYK 302 A 1 HETATM 9 N N1 JYK . . . C 3 19.795 7.708 12.738 1 102.98 ? N1 JYK 302 A 1 HETATM 10 N N2 JYK . . . C 3 19.471 8.151 13.864 1 102.09 ? N2 JYK 302 A 1 HETATM 11 N N3 JYK . . . C 3 18.662 11.205 13.276 1 97.18 ? N3 JYK 302 A 1 HETATM 12 N N4 JYK . . . C 3 18.272 13.115 12.133 1 95.04 ? N4 JYK 302 A 1 HETATM 13 N N5 JYK . . . C 3 20.65 14.674 10.938 1 95.41 ? N5 JYK 302 A 1 HETATM 14 N N6 JYK . . . C 3 21.964 12.99 11.82 1 94.83 ? N6 JYK 302 A 1 HETATM 15 N N7 JYK . . . C 3 21.091 11.126 13.077 1 94.38 ? N7 JYK 302 A 1 HETATM 16 BR BR JYK . . . C 3 15.924 11.898 13.036 0.5 92.2 ? BR JYK 302 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 16 #