data_6RBV # _model_server_result.job_id LeSFft4OqJtsUJXj7jN18w _model_server_result.datetime_utc '2024-11-24 23:19:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rbv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 6RBV # _exptl.entry_id 6RBV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 297.115 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 9-(3-azidopropyl)-8-bromanyl-purin-6-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RBV _cell.length_a 62.442 _cell.length_b 76.726 _cell.length_c 118.758 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RBV _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall 'I 2 2' _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 62.442 0 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 62.442 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H9 Br N8' _chem_comp.formula_weight 297.115 _chem_comp.id JYE _chem_comp.mon_nstd_flag . _chem_comp.name 9-(3-azidopropyl)-8-bromanyl-purin-6-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N6 C6 JYE sing 193 n n C6 N1 JYE doub 194 n y C6 C5 JYE sing 195 n y N1 C2 JYE sing 196 n y N7 C5 JYE sing 197 n y N7 C8 JYE doub 198 n y C5 C4 JYE doub 199 n y C2 N3 JYE doub 200 n y C8 BR8 JYE sing 201 n n C8 N9 JYE sing 202 n y C4 N3 JYE sing 203 n y C4 N9 JYE sing 204 n y N9 CAG JYE sing 205 n n CAE CAG JYE sing 206 n n CAE CAF JYE sing 207 n n CAF NAH JYE sing 208 n n NAH NAL JYE doub 209 n n NAL NAA JYE doub 210 n n C2 H1 JYE sing 211 n n CAE H2 JYE sing 212 n n CAE H3 JYE sing 213 n n CAF H4 JYE sing 214 n n CAF H5 JYE sing 215 n n CAG H6 JYE sing 216 n n CAG H7 JYE sing 217 n n N6 H8 JYE sing 218 n n N6 H9 JYE sing 219 n n # _atom_sites.entry_id 6RBV _atom_sites.fract_transf_matrix[1][1] 0.016015 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013033 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00842 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CIT A 1 301 1 CIT CIT . C 3 JYE A 1 302 1 JYE 3NB . D 4 HOH A 1 401 81 HOH HOH . D 4 HOH A 2 402 7 HOH HOH . D 4 HOH A 3 403 78 HOH HOH . D 4 HOH A 4 404 40 HOH HOH . D 4 HOH A 5 405 21 HOH HOH . D 4 HOH A 6 406 114 HOH HOH . D 4 HOH A 7 407 20 HOH HOH . D 4 HOH A 8 408 69 HOH HOH . D 4 HOH A 9 409 91 HOH HOH . D 4 HOH A 10 410 24 HOH HOH . D 4 HOH A 11 411 1 HOH HOH . D 4 HOH A 12 412 110 HOH HOH . D 4 HOH A 13 413 17 HOH HOH . D 4 HOH A 14 414 52 HOH HOH . D 4 HOH A 15 415 36 HOH HOH . D 4 HOH A 16 416 32 HOH HOH . D 4 HOH A 17 417 31 HOH HOH . D 4 HOH A 18 418 3 HOH HOH . D 4 HOH A 19 419 5 HOH HOH . D 4 HOH A 20 420 83 HOH HOH . D 4 HOH A 21 421 79 HOH HOH . D 4 HOH A 22 422 15 HOH HOH . D 4 HOH A 23 423 62 HOH HOH . D 4 HOH A 24 424 26 HOH HOH . D 4 HOH A 25 425 76 HOH HOH . D 4 HOH A 26 426 18 HOH HOH . D 4 HOH A 27 427 6 HOH HOH . D 4 HOH A 28 428 39 HOH HOH . D 4 HOH A 29 429 13 HOH HOH . D 4 HOH A 30 430 74 HOH HOH . D 4 HOH A 31 431 23 HOH HOH . D 4 HOH A 32 432 19 HOH HOH . D 4 HOH A 33 433 2 HOH HOH . D 4 HOH A 34 434 41 HOH HOH . D 4 HOH A 35 435 64 HOH HOH . D 4 HOH A 36 436 77 HOH HOH . D 4 HOH A 37 437 16 HOH HOH . D 4 HOH A 38 438 72 HOH HOH . D 4 HOH A 39 439 73 HOH HOH . D 4 HOH A 40 440 37 HOH HOH . D 4 HOH A 41 441 38 HOH HOH . D 4 HOH A 42 442 88 HOH HOH . D 4 HOH A 43 443 65 HOH HOH . D 4 HOH A 44 444 10 HOH HOH . D 4 HOH A 45 445 82 HOH HOH . D 4 HOH A 46 446 29 HOH HOH . D 4 HOH A 47 447 45 HOH HOH . D 4 HOH A 48 448 14 HOH HOH . D 4 HOH A 49 449 49 HOH HOH . D 4 HOH A 50 450 28 HOH HOH . D 4 HOH A 51 451 84 HOH HOH . D 4 HOH A 52 452 22 HOH HOH . D 4 HOH A 53 453 27 HOH HOH . D 4 HOH A 54 454 75 HOH HOH . D 4 HOH A 55 455 4 HOH HOH . D 4 HOH A 56 456 68 HOH HOH . D 4 HOH A 57 457 106 HOH HOH . D 4 HOH A 58 458 34 HOH HOH . D 4 HOH A 59 459 43 HOH HOH . D 4 HOH A 60 460 12 HOH HOH . D 4 HOH A 61 461 46 HOH HOH . D 4 HOH A 62 462 25 HOH HOH . D 4 HOH A 63 463 125 HOH HOH . D 4 HOH A 64 464 116 HOH HOH . D 4 HOH A 65 465 57 HOH HOH . D 4 HOH A 66 466 85 HOH HOH . D 4 HOH A 67 467 99 HOH HOH . D 4 HOH A 68 468 9 HOH HOH . D 4 HOH A 69 469 44 HOH HOH . D 4 HOH A 70 470 30 HOH HOH . D 4 HOH A 71 471 124 HOH HOH . D 4 HOH A 72 472 107 HOH HOH . D 4 HOH A 73 473 101 HOH HOH . D 4 HOH A 74 474 89 HOH HOH . D 4 HOH A 75 475 67 HOH HOH . D 4 HOH A 76 476 71 HOH HOH . D 4 HOH A 77 477 122 HOH HOH . D 4 HOH A 78 478 103 HOH HOH . D 4 HOH A 79 479 123 HOH HOH . D 4 HOH A 80 480 121 HOH HOH . D 4 HOH A 81 481 58 HOH HOH . D 4 HOH A 82 482 119 HOH HOH . D 4 HOH A 83 483 48 HOH HOH . D 4 HOH A 84 484 51 HOH HOH . D 4 HOH A 85 485 118 HOH HOH . D 4 HOH A 86 486 93 HOH HOH . D 4 HOH A 87 487 120 HOH HOH . D 4 HOH A 88 488 115 HOH HOH . D 4 HOH A 89 489 63 HOH HOH . D 4 HOH A 90 490 100 HOH HOH . D 4 HOH A 91 491 87 HOH HOH . D 4 HOH A 92 492 117 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 JYE . . . C 3 21.679 11.244 12.641 1 51.98 ? C2 JYE 302 A 1 HETATM 2 C C4 JYE . . . C 3 19.371 11.426 12.773 1 80.91 ? C4 JYE 302 A 1 HETATM 3 C C5 JYE . . . C 3 19.458 12.727 12.291 1 77.4 ? C5 JYE 302 A 1 HETATM 4 C C6 JYE . . . C 3 20.708 13.246 11.99 1 58.19 ? C6 JYE 302 A 1 HETATM 5 C C8 JYE . . . C 3 17.395 12.283 12.635 1 85.39 ? C8 JYE 302 A 1 HETATM 6 C CAE JYE . . . C 3 18.146 8.699 13.062 1 86.6 ? CAE JYE 302 A 1 HETATM 7 C CAF JYE . . . C 3 17.411 7.467 13.593 0.8 88.49 ? CAF JYE 302 A 1 HETATM 8 C CAG JYE . . . C 3 17.414 9.976 13.479 1 85.04 ? CAG JYE 302 A 1 HETATM 9 N N1 JYE . . . C 3 21.792 12.479 12.177 1 54.27 ? N1 JYE 302 A 1 HETATM 10 N N3 JYE . . . C 3 20.501 10.718 12.94 1 63.44 ? N3 JYE 302 A 1 HETATM 11 N N6 JYE . . . C 3 20.826 14.487 11.523 1 51.58 ? N6 JYE 302 A 1 HETATM 12 N N7 JYE . . . C 3 18.226 13.232 12.214 1 75.82 ? N7 JYE 302 A 1 HETATM 13 N N9 JYE . . . C 3 18.073 11.198 12.979 1 82.86 ? N9 JYE 302 A 1 HETATM 14 N NAA JYE . . . C 3 18.976 6.119 16.497 0.8 86.28 ? NAA JYE 302 A 1 HETATM 15 N NAH JYE . . . C 3 17.343 7.534 15.06 0.8 92.43 ? NAH JYE 302 A 1 HETATM 16 N NAL JYE . . . C 3 18.158 6.827 15.779 0.8 90.17 ? NAL JYE 302 A 1 HETATM 17 BR BR8 JYE . . . C 3 15.511 12.44 12.745 0.6 110.06 ? BR8 JYE 302 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 17 #