data_6RBX # _model_server_result.job_id IFGbhK0gZmEJzN9qLiPtUQ _model_server_result.datetime_utc '2024-11-13 00:21:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rbx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6RBX # _exptl.entry_id 6RBX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 272.102 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(6-azanyl-8-bromanyl-purin-9-yl)propan-1-ol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RBX _cell.length_a 63.34 _cell.length_b 75.71 _cell.length_c 119.45 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RBX _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 1 2 A,B,C,D 1 3 A,B,C,D 1 4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 63.34 0 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 63.34 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H10 Br N5 O' _chem_comp.formula_weight 272.102 _chem_comp.id JYT _chem_comp.mon_nstd_flag . _chem_comp.name 3-(6-azanyl-8-bromanyl-purin-9-yl)propan-1-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N6 C6 JYT sing 193 n n C6 N1 JYT doub 194 n y C6 C5 JYT sing 195 n y N1 C2 JYT sing 196 n y N7 C5 JYT sing 197 n y N7 C8 JYT doub 198 n y C5 C4 JYT doub 199 n y C2 N3 JYT doub 200 n y C8 BR8 JYT sing 201 n n C8 N9 JYT sing 202 n y C4 N3 JYT sing 203 n y C4 N9 JYT sing 204 n y CAF CAE JYT sing 205 n n CAF CAG JYT sing 206 n n N9 CAG JYT sing 207 n n CAE OAB JYT sing 208 n n C2 H1 JYT sing 209 n n CAE H2 JYT sing 210 n n CAE H3 JYT sing 211 n n CAF H4 JYT sing 212 n n CAF H5 JYT sing 213 n n CAG H6 JYT sing 214 n n CAG H7 JYT sing 215 n n N6 H8 JYT sing 216 n n N6 H9 JYT sing 217 n n OAB H10 JYT sing 218 n n # _atom_sites.entry_id 6RBX _atom_sites.fract_transf_matrix[1][1] 0.015788 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013208 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008372 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JYT A 1 301 1 JYT 3OB . C 3 CIT A 1 302 1 CIT CIT . D 4 HOH A 1 401 24 HOH HOH . D 4 HOH A 2 402 314 HOH HOH . D 4 HOH A 3 403 2 HOH HOH . D 4 HOH A 4 404 74 HOH HOH . D 4 HOH A 5 405 11 HOH HOH . D 4 HOH A 6 406 29 HOH HOH . D 4 HOH A 7 407 67 HOH HOH . D 4 HOH A 8 408 1 HOH HOH . D 4 HOH A 9 409 27 HOH HOH . D 4 HOH A 10 410 32 HOH HOH . D 4 HOH A 11 411 33 HOH HOH . D 4 HOH A 12 412 23 HOH HOH . D 4 HOH A 13 413 21 HOH HOH . D 4 HOH A 14 414 5 HOH HOH . D 4 HOH A 15 415 38 HOH HOH . D 4 HOH A 16 416 45 HOH HOH . D 4 HOH A 17 417 182 HOH HOH . D 4 HOH A 18 418 46 HOH HOH . D 4 HOH A 19 419 9 HOH HOH . D 4 HOH A 20 420 75 HOH HOH . D 4 HOH A 21 421 34 HOH HOH . D 4 HOH A 22 422 70 HOH HOH . D 4 HOH A 23 423 25 HOH HOH . D 4 HOH A 24 424 31 HOH HOH . D 4 HOH A 25 425 94 HOH HOH . D 4 HOH A 26 426 48 HOH HOH . D 4 HOH A 27 427 150 HOH HOH . D 4 HOH A 28 428 125 HOH HOH . D 4 HOH A 29 429 20 HOH HOH . D 4 HOH A 30 430 6 HOH HOH . D 4 HOH A 31 431 179 HOH HOH . D 4 HOH A 32 432 64 HOH HOH . D 4 HOH A 33 433 78 HOH HOH . D 4 HOH A 34 434 54 HOH HOH . D 4 HOH A 35 435 39 HOH HOH . D 4 HOH A 36 436 274 HOH HOH . D 4 HOH A 37 437 283 HOH HOH . D 4 HOH A 38 438 3 HOH HOH . D 4 HOH A 39 439 26 HOH HOH . D 4 HOH A 40 440 321 HOH HOH . D 4 HOH A 41 441 62 HOH HOH . D 4 HOH A 42 442 271 HOH HOH . D 4 HOH A 43 443 265 HOH HOH . D 4 HOH A 44 444 47 HOH HOH . D 4 HOH A 45 445 299 HOH HOH . D 4 HOH A 46 446 35 HOH HOH . D 4 HOH A 47 447 313 HOH HOH . D 4 HOH A 48 448 84 HOH HOH . D 4 HOH A 49 449 344 HOH HOH . D 4 HOH A 50 450 338 HOH HOH . D 4 HOH A 51 451 292 HOH HOH . D 4 HOH A 52 452 348 HOH HOH . D 4 HOH A 53 453 330 HOH HOH . D 4 HOH A 54 454 117 HOH HOH . D 4 HOH A 55 455 124 HOH HOH . D 4 HOH A 56 456 209 HOH HOH . D 4 HOH A 57 457 146 HOH HOH . D 4 HOH A 58 458 109 HOH HOH . D 4 HOH A 59 459 82 HOH HOH . D 4 HOH A 60 460 275 HOH HOH . D 4 HOH A 61 461 347 HOH HOH . D 4 HOH A 62 462 76 HOH HOH . D 4 HOH A 63 463 155 HOH HOH . D 4 HOH A 64 464 282 HOH HOH . D 4 HOH A 65 465 100 HOH HOH . D 4 HOH A 66 466 226 HOH HOH . D 4 HOH A 67 467 273 HOH HOH . D 4 HOH A 68 468 346 HOH HOH . D 4 HOH A 69 469 340 HOH HOH . D 4 HOH A 70 470 89 HOH HOH . D 4 HOH A 71 471 163 HOH HOH . D 4 HOH A 72 472 278 HOH HOH . D 4 HOH A 73 473 349 HOH HOH . D 4 HOH A 74 474 263 HOH HOH . D 4 HOH A 75 475 101 HOH HOH . D 4 HOH A 76 476 116 HOH HOH . D 4 HOH A 77 477 341 HOH HOH . D 4 HOH A 78 478 171 HOH HOH . D 4 HOH A 79 479 280 HOH HOH . D 4 HOH A 80 480 342 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 JYT . . . B 2 22.249 11.733 12.634 1 41.28 ? C2 JYT 301 A 1 HETATM 2 C C4 JYT . . . B 2 19.97 11.534 12.947 1 44.73 ? C4 JYT 301 A 1 HETATM 3 C C5 JYT . . . B 2 19.771 12.731 12.275 1 40.67 ? C5 JYT 301 A 1 HETATM 4 C C6 JYT . . . B 2 20.882 13.406 11.792 1 41.63 ? C6 JYT 301 A 1 HETATM 5 C C8 JYT . . . B 2 17.86 11.971 12.877 1 46.49 ? C8 JYT 301 A 1 HETATM 6 C CAE JYT . . . B 2 18.016 7.396 13.77 0.7 47.24 ? CAE JYT 301 A 1 HETATM 7 C CAF JYT . . . B 2 18.299 8.712 13.043 0.9 46.92 ? CAF JYT 301 A 1 HETATM 8 C CAG JYT . . . B 2 18.494 9.859 14.036 1 45 ? CAG JYT 301 A 1 HETATM 9 N N1 JYT . . . B 2 22.099 12.88 11.989 1 39.85 ? N1 JYT 301 A 1 HETATM 10 N N3 JYT . . . B 2 21.213 11.062 13.111 1 43.02 ? N3 JYT 301 A 1 HETATM 11 N N6 JYT . . . B 2 20.744 14.557 11.141 1 39.38 ? N6 JYT 301 A 1 HETATM 12 N N7 JYT . . . B 2 18.459 12.979 12.246 1 44.78 ? N7 JYT 301 A 1 HETATM 13 N N9 JYT . . . B 2 18.768 11.101 13.299 1 48.22 ? N9 JYT 301 A 1 HETATM 14 O OAB JYT . . . B 2 19.118 7.077 14.624 0.6 47.5 ? OAB JYT 301 A 1 HETATM 15 BR BR8 JYT . . . B 2 15.99 11.808 13.133 0.5 53.03 ? BR8 JYT 301 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 15 #