data_6RBY # _model_server_result.job_id FLtNKgwDeRPHA4gJmNGD4g _model_server_result.datetime_utc '2024-11-13 18:49:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rby # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 6RBY # _exptl.entry_id 6RBY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 286.128 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(6-azanyl-8-bromanyl-purin-9-yl)butan-1-ol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RBY _cell.length_a 62.096 _cell.length_b 76.7 _cell.length_c 118.403 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RBY _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 62.096 0 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 62.096 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H12 Br N5 O' _chem_comp.formula_weight 286.128 _chem_comp.id JYW _chem_comp.mon_nstd_flag . _chem_comp.name 4-(6-azanyl-8-bromanyl-purin-9-yl)butan-1-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C9 JYW sing 193 n n N5 C4 JYW sing 194 n n C8 C9 JYW sing 195 n n C8 C7 JYW sing 196 n n C4 N4 JYW doub 197 n y C4 C3 JYW sing 198 n y N4 C5 JYW sing 199 n y N3 C3 JYW sing 200 n y N3 C2 JYW doub 201 n y C3 C1 JYW doub 202 n y C5 N2 JYW doub 203 n y C2 BR1 JYW sing 204 n n C2 N1 JYW sing 205 n y C1 N2 JYW sing 206 n y C1 N1 JYW sing 207 n y C7 C6 JYW sing 208 n n N1 C6 JYW sing 209 n n C5 H1 JYW sing 210 n n C6 H2 JYW sing 211 n n C6 H3 JYW sing 212 n n C7 H4 JYW sing 213 n n C7 H5 JYW sing 214 n n C8 H6 JYW sing 215 n n C8 H7 JYW sing 216 n n C9 H8 JYW sing 217 n n C9 H9 JYW sing 218 n n N5 H10 JYW sing 219 n n N5 H11 JYW sing 220 n n O1 H12 JYW sing 221 n n # _atom_sites.entry_id 6RBY _atom_sites.fract_transf_matrix[1][1] 0.016104 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013038 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008446 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CIT A 1 301 265 CIT CIT . C 3 JYW A 1 302 1 JYW PDB . D 4 HOH A 1 401 42 HOH HOH . D 4 HOH A 2 402 31 HOH HOH . D 4 HOH A 3 403 21 HOH HOH . D 4 HOH A 4 404 6 HOH HOH . D 4 HOH A 5 405 35 HOH HOH . D 4 HOH A 6 406 49 HOH HOH . D 4 HOH A 7 407 7 HOH HOH . D 4 HOH A 8 408 26 HOH HOH . D 4 HOH A 9 409 1 HOH HOH . D 4 HOH A 10 410 36 HOH HOH . D 4 HOH A 11 411 13 HOH HOH . D 4 HOH A 12 412 8 HOH HOH . D 4 HOH A 13 413 17 HOH HOH . D 4 HOH A 14 414 2 HOH HOH . D 4 HOH A 15 415 3 HOH HOH . D 4 HOH A 16 416 23 HOH HOH . D 4 HOH A 17 417 15 HOH HOH . D 4 HOH A 18 418 24 HOH HOH . D 4 HOH A 19 419 22 HOH HOH . D 4 HOH A 20 420 43 HOH HOH . D 4 HOH A 21 421 19 HOH HOH . D 4 HOH A 22 422 29 HOH HOH . D 4 HOH A 23 423 5 HOH HOH . D 4 HOH A 24 424 33 HOH HOH . D 4 HOH A 25 425 20 HOH HOH . D 4 HOH A 26 426 16 HOH HOH . D 4 HOH A 27 427 53 HOH HOH . D 4 HOH A 28 428 45 HOH HOH . D 4 HOH A 29 429 4 HOH HOH . D 4 HOH A 30 430 28 HOH HOH . D 4 HOH A 31 431 47 HOH HOH . D 4 HOH A 32 432 41 HOH HOH . D 4 HOH A 33 433 18 HOH HOH . D 4 HOH A 34 434 25 HOH HOH . D 4 HOH A 35 435 38 HOH HOH . D 4 HOH A 36 436 37 HOH HOH . D 4 HOH A 37 437 52 HOH HOH . D 4 HOH A 38 438 11 HOH HOH . D 4 HOH A 39 439 39 HOH HOH . D 4 HOH A 40 440 27 HOH HOH . D 4 HOH A 41 441 10 HOH HOH . D 4 HOH A 42 442 50 HOH HOH . D 4 HOH A 43 443 48 HOH HOH . D 4 HOH A 44 444 12 HOH HOH . D 4 HOH A 45 445 40 HOH HOH . D 4 HOH A 46 446 51 HOH HOH . D 4 HOH A 47 447 14 HOH HOH . D 4 HOH A 48 448 46 HOH HOH . D 4 HOH A 49 449 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 JYW . . . C 3 17.506 12.25 12.686 1 54.69 ? C2 JYW 302 A 1 HETATM 2 C C3 JYW . . . C 3 19.5 12.825 12.178 1 50.35 ? C3 JYW 302 A 1 HETATM 3 C C4 JYW . . . C 3 20.616 13.415 11.748 1 41.59 ? C4 JYW 302 A 1 HETATM 4 C C5 JYW . . . C 3 21.903 11.626 12.585 1 50.59 ? C5 JYW 302 A 1 HETATM 5 C C6 JYW . . . C 3 18.019 10.013 13.841 1 50.96 ? C6 JYW 302 A 1 HETATM 6 C C7 JYW . . . C 3 16.976 9.157 13.116 1 54.6 ? C7 JYW 302 A 1 HETATM 7 C C1 JYW . . . C 3 19.55 11.645 12.81 1 51.2 ? C1 JYW 302 A 1 HETATM 8 C C8 JYW . . . C 3 17.463 8.798 11.708 1 64.21 ? C8 JYW 302 A 1 HETATM 9 C C9 JYW . . . C 3 18.77 8.003 11.776 1 72.47 ? C9 JYW 302 A 1 HETATM 10 N N1 JYW . . . C 3 18.309 11.283 13.124 1 49.04 ? N1 JYW 302 A 1 HETATM 11 N N2 JYW . . . C 3 20.721 11.029 13.027 1 52.61 ? N2 JYW 302 A 1 HETATM 12 N N3 JYW . . . C 3 18.225 13.2 12.103 1 47.69 ? N3 JYW 302 A 1 HETATM 13 N N4 JYW . . . C 3 21.819 12.858 11.931 1 47.58 ? N4 JYW 302 A 1 HETATM 14 N N5 JYW . . . C 3 20.473 14.587 11.131 1 35.31 ? N5 JYW 302 A 1 HETATM 15 O O1 JYW . . . C 3 19.201 7.683 10.446 1 80.87 ? O1 JYW 302 A 1 HETATM 16 BR BR1 JYW . . . C 3 15.616 12.298 12.849 0.6 88.61 ? BR1 JYW 302 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 16 #