data_6RBZ # _model_server_result.job_id qM7ceBMphkymIK3zifRuXg _model_server_result.datetime_utc '2024-11-13 00:06:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rbz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 6RBZ # _exptl.entry_id 6RBZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 271.117 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 9-(3-azanylpropyl)-8-bromanyl-purin-6-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RBZ _cell.length_a 62.12 _cell.length_b 76.68 _cell.length_c 118.51 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RBZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 1 2 A,B,C,D 1 3 A,B,C,D 1 4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 62.12 0 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 62.12 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H11 Br N6' _chem_comp.formula_weight 271.117 _chem_comp.id JXK _chem_comp.mon_nstd_flag . _chem_comp.name 9-(3-azanylpropyl)-8-bromanyl-purin-6-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N5 C7 JXK sing 193 n n C7 N4 JXK doub 194 n y C7 C4 JXK sing 195 n y N4 C6 JXK sing 196 n y N2 C4 JXK sing 197 n y N2 C3 JXK doub 198 n y C4 C5 JXK doub 199 n y C6 N3 JXK doub 200 n y C3 BR JXK sing 201 n n C3 N1 JXK sing 202 n y C5 N3 JXK sing 203 n y C5 N1 JXK sing 204 n y N1 C2 JXK sing 205 n n C1 C JXK sing 206 n n C1 C2 JXK sing 207 n n C N JXK sing 208 n n C6 H8 JXK sing 209 n n C1 H4 JXK sing 210 n n C1 H5 JXK sing 211 n n N H11 JXK sing 212 n n N H1 JXK sing 213 n n C H2 JXK sing 214 n n C H3 JXK sing 215 n n C2 H6 JXK sing 216 n n C2 H7 JXK sing 217 n n N5 H9 JXK sing 218 n n N5 H10 JXK sing 219 n n # _atom_sites.entry_id 6RBZ _atom_sites.fract_transf_matrix[1][1] 0.016098 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013041 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008438 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CIT A 1 301 1 CIT CIT . C 3 JXK A 1 302 1 JXK B3N . D 4 HOH A 1 401 3 HOH HOH . D 4 HOH A 2 402 5 HOH HOH . D 4 HOH A 3 403 8 HOH HOH . D 4 HOH A 4 404 12 HOH HOH . D 4 HOH A 5 405 2 HOH HOH . D 4 HOH A 6 406 1 HOH HOH . D 4 HOH A 7 407 6 HOH HOH . D 4 HOH A 8 408 9 HOH HOH . D 4 HOH A 9 409 10 HOH HOH . D 4 HOH A 10 410 7 HOH HOH . D 4 HOH A 11 411 4 HOH HOH . D 4 HOH A 12 412 38 HOH HOH . D 4 HOH A 13 413 15 HOH HOH . D 4 HOH A 14 414 11 HOH HOH . D 4 HOH A 15 415 17 HOH HOH . D 4 HOH A 16 416 26 HOH HOH . D 4 HOH A 17 417 37 HOH HOH . D 4 HOH A 18 418 31 HOH HOH . D 4 HOH A 19 419 43 HOH HOH . D 4 HOH A 20 420 36 HOH HOH . D 4 HOH A 21 421 13 HOH HOH . D 4 HOH A 22 422 19 HOH HOH . D 4 HOH A 23 423 41 HOH HOH . D 4 HOH A 24 424 39 HOH HOH . D 4 HOH A 25 425 20 HOH HOH . D 4 HOH A 26 426 25 HOH HOH . D 4 HOH A 27 427 42 HOH HOH . D 4 HOH A 28 428 33 HOH HOH . D 4 HOH A 29 429 40 HOH HOH . D 4 HOH A 30 430 30 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 JXK . . . C 3 20.506 13.498 11.654 1 99.83 ? C7 JXK 302 A 1 HETATM 2 C C6 JXK . . . C 3 21.648 11.754 12.656 1 99.7 ? C6 JXK 302 A 1 HETATM 3 C C5 JXK . . . C 3 19.457 11.744 12.871 1 102.23 ? C5 JXK 302 A 1 HETATM 4 C C1 JXK . . . C 3 17.104 9.118 13.257 1 106.47 ? C1 JXK 302 A 1 HETATM 5 N N3 JXK . . . C 3 20.597 11.111 13.167 1 100.81 ? N3 JXK 302 A 1 HETATM 6 N N JXK . . . C 3 16.313 7.654 15.128 1 107.95 ? N JXK 302 A 1 HETATM 7 C C JXK . . . C 3 17.149 7.755 13.923 1 107.45 ? C JXK 302 A 1 HETATM 8 C C2 JXK . . . C 3 17.783 10.216 14.058 1 105.19 ? C2 JXK 302 A 1 HETATM 9 C C3 JXK . . . C 3 17.349 12.359 12.677 1 104.01 ? C3 JXK 302 A 1 HETATM 10 C C4 JXK . . . C 3 19.322 12.913 12.134 1 102.22 ? C4 JXK 302 A 1 HETATM 11 N N1 JXK . . . C 3 18.176 11.369 13.24 1 103.75 ? N1 JXK 302 A 1 HETATM 12 N N2 JXK . . . C 3 17.984 13.28 12.024 1 102.91 ? N2 JXK 302 A 1 HETATM 13 N N4 JXK . . . C 3 21.673 12.881 11.937 1 99.3 ? N4 JXK 302 A 1 HETATM 14 N N5 JXK . . . C 3 20.542 14.63 10.946 1 98.88 ? N5 JXK 302 A 1 HETATM 15 BR BR JXK . . . C 3 15.502 12.299 12.879 1 108.02 ? BR JXK 302 A 1 HETATM 16 H H8 JXK . . . C 3 22.625 11.311 12.843 1 119.71 ? H8 JXK 302 A 1 HETATM 17 H H4 JXK . . . C 3 16.069 9.396 13.062 1 127.82 ? H4 JXK 302 A 1 HETATM 18 H H5 JXK . . . C 3 17.554 9.056 12.267 1 127.82 ? H5 JXK 302 A 1 HETATM 19 H H11 JXK . . . C 3 15.346 7.415 14.931 1 129.61 ? H11 JXK 302 A 1 HETATM 20 H H1 JXK . . . C 3 16.353 8.466 15.735 1 129.61 ? H1 JXK 302 A 1 HETATM 21 H H2 JXK . . . C 3 18.171 7.499 14.2 1 129 ? H2 JXK 302 A 1 HETATM 22 H H3 JXK . . . C 3 16.833 6.979 13.227 1 129 ? H3 JXK 302 A 1 HETATM 23 H H6 JXK . . . C 3 17.132 10.583 14.849 1 126.29 ? H6 JXK 302 A 1 HETATM 24 H H7 JXK . . . C 3 18.681 9.843 14.549 1 126.29 ? H7 JXK 302 A 1 HETATM 25 H H9 JXK . . . C 3 21.428 15.006 10.625 1 118.72 ? H9 JXK 302 A 1 HETATM 26 H H10 JXK . . . C 3 19.682 15.123 10.724 1 118.72 ? H10 JXK 302 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #