data_6RC0 # _model_server_result.job_id JAGq1uvzoCBhNwD3w3qlXg _model_server_result.datetime_utc '2024-11-13 01:54:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rc0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 6RC0 # _exptl.entry_id 6RC0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 298.139 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 8-bromanyl-9-[(2~{R})-oxan-2-yl]purin-6-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RC0 _cell.length_a 62.11 _cell.length_b 78.19 _cell.length_c 117.96 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RC0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 62.11 0 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 62.11 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H12 Br N5 O' _chem_comp.formula_weight 298.139 _chem_comp.id JXH _chem_comp.mon_nstd_flag . _chem_comp.name 8-bromanyl-9-[(2~{R})-oxan-2-yl]purin-6-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N5 C4 JXH sing 193 n n C4 N4 JXH doub 194 n y C4 C3 JXH sing 195 n y N4 C5 JXH sing 196 n y N3 C3 JXH sing 197 n y N3 C2 JXH doub 198 n y C3 C1 JXH doub 199 n y C5 N2 JXH doub 200 n y C7 C8 JXH sing 201 n n C7 C6 JXH sing 202 n n C2 BR1 JXH sing 203 n n C2 N1 JXH sing 204 n y C1 N2 JXH sing 205 n y C1 N1 JXH sing 206 n y C8 C9 JXH sing 207 n n N1 C6 JXH sing 208 n n C6 O1 JXH sing 209 n n C9 C10 JXH sing 210 n n O1 C10 JXH sing 211 n n C5 H1 JXH sing 212 n n C6 H2 JXH sing 213 n n C7 H3 JXH sing 214 n n C7 H4 JXH sing 215 n n C10 H5 JXH sing 216 n n C10 H6 JXH sing 217 n n C8 H7 JXH sing 218 n n C8 H8 JXH sing 219 n n C9 H9 JXH sing 220 n n C9 H10 JXH sing 221 n n N5 H11 JXH sing 222 n n N5 H12 JXH sing 223 n n # _atom_sites.entry_id 6RC0 _atom_sites.fract_transf_matrix[1][1] 0.0161 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012789 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008477 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CIT A 1 301 1 CIT CIT . C 3 JXH A 1 302 1 JXH PDB . D 4 HOH A 1 401 1 HOH HOH . D 4 HOH A 2 402 22 HOH HOH . D 4 HOH A 3 403 16 HOH HOH . D 4 HOH A 4 404 4 HOH HOH . D 4 HOH A 5 405 23 HOH HOH . D 4 HOH A 6 406 9 HOH HOH . D 4 HOH A 7 407 44 HOH HOH . D 4 HOH A 8 408 32 HOH HOH . D 4 HOH A 9 409 2 HOH HOH . D 4 HOH A 10 410 10 HOH HOH . D 4 HOH A 11 411 15 HOH HOH . D 4 HOH A 12 412 13 HOH HOH . D 4 HOH A 13 413 46 HOH HOH . D 4 HOH A 14 414 48 HOH HOH . D 4 HOH A 15 415 47 HOH HOH . D 4 HOH A 16 416 20 HOH HOH . D 4 HOH A 17 417 40 HOH HOH . D 4 HOH A 18 418 12 HOH HOH . D 4 HOH A 19 419 19 HOH HOH . D 4 HOH A 20 420 36 HOH HOH . D 4 HOH A 21 421 35 HOH HOH . D 4 HOH A 22 422 38 HOH HOH . D 4 HOH A 23 423 50 HOH HOH . D 4 HOH A 24 424 43 HOH HOH . D 4 HOH A 25 425 42 HOH HOH . D 4 HOH A 26 426 49 HOH HOH . D 4 HOH A 27 427 24 HOH HOH . D 4 HOH A 28 428 45 HOH HOH . D 4 HOH A 29 429 26 HOH HOH . D 4 HOH A 30 430 25 HOH HOH . D 4 HOH A 31 431 21 HOH HOH . D 4 HOH A 32 432 34 HOH HOH . D 4 HOH A 33 433 37 HOH HOH . D 4 HOH A 34 434 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 JXH . . . C 3 17.271 12.642 12.694 0.7 63.52 ? C2 JXH 302 A 1 HETATM 2 C C3 JXH . . . C 3 19.296 12.986 12.239 0.7 63.21 ? C3 JXH 302 A 1 HETATM 3 C C4 JXH . . . C 3 20.464 13.398 11.851 0.7 62.74 ? C4 JXH 302 A 1 HETATM 4 C C5 JXH . . . C 3 21.493 11.581 12.831 0.7 62.66 ? C5 JXH 302 A 1 HETATM 5 C C6 JXH . . . C 3 17.69 10.521 13.94 0.7 65.63 ? C6 JXH 302 A 1 HETATM 6 C C7 JXH . . . C 3 16.251 10.283 14.268 0.7 66.18 ? C7 JXH 302 A 1 HETATM 7 C C10 JXH . . . C 3 17.746 8.183 13.711 0.7 66.59 ? C10 JXH 302 A 1 HETATM 8 C C1 JXH . . . C 3 19.202 11.881 12.899 0.7 63.37 ? C1 JXH 302 A 1 HETATM 9 C C8 JXH . . . C 3 16.091 9.135 15.244 0.7 66.27 ? C8 JXH 302 A 1 HETATM 10 C C9 JXH . . . C 3 17.253 8.242 15.159 0.7 66.44 ? C9 JXH 302 A 1 HETATM 11 N N1 JXH . . . C 3 17.952 11.681 13.178 0.7 63.91 ? N1 JXH 302 A 1 HETATM 12 N N2 JXH . . . C 3 20.265 11.166 13.227 0.7 62.94 ? N2 JXH 302 A 1 HETATM 13 N N3 JXH . . . C 3 18.089 13.457 12.106 0.7 63.39 ? N3 JXH 302 A 1 HETATM 14 N N4 JXH . . . C 3 21.567 12.749 12.12 0.7 62.57 ? N4 JXH 302 A 1 HETATM 15 N N5 JXH . . . C 3 20.515 14.477 11.181 0.7 62.78 ? N5 JXH 302 A 1 HETATM 16 O O1 JXH . . . C 3 18.139 9.462 13.185 0.7 66.42 ? O1 JXH 302 A 1 HETATM 17 BR BR1 JXH . . . C 3 15.517 12.789 12.852 0.7 63.82 ? BR1 JXH 302 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 17 #