data_6RC2 # _model_server_result.job_id 42EodR5hOYTuhwdLtrb8cA _model_server_result.datetime_utc '2024-10-15 13:17:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rc2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 6RC2 # _exptl.entry_id 6RC2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 215.254 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 8-methyl-9-pent-4-ynyl-purin-6-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RC2 _cell.length_a 62.422 _cell.length_b 76.438 _cell.length_c 118.13 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RC2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 1 2 A,B,C,D 1 3 A,B,C,D 1 4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 62.422 0 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 62.422 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H13 N5' _chem_comp.formula_weight 215.254 _chem_comp.id JY2 _chem_comp.mon_nstd_flag . _chem_comp.name 8-methyl-9-pent-4-ynyl-purin-6-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N6 C6 JY2 sing 193 n n C6 N1 JY2 doub 194 n y C6 C5 JY2 sing 195 n y N7 C5 JY2 sing 196 n y N7 C8 JY2 doub 197 n y N1 C2 JY2 sing 198 n y C5 C4 JY2 doub 199 n y CAG CAF JY2 sing 200 n n CAG CAH JY2 sing 201 n n C8 CAB JY2 sing 202 n n C8 N9 JY2 sing 203 n y C2 N3 JY2 doub 204 n y CAF CAD JY2 sing 205 n n C4 N3 JY2 sing 206 n y C4 N9 JY2 sing 207 n y N9 CAH JY2 sing 208 n n CAD CAA JY2 trip 209 n n C2 H1 JY2 sing 210 n n CAA H2 JY2 sing 211 n n CAB H3 JY2 sing 212 n n CAB H4 JY2 sing 213 n n CAB H5 JY2 sing 214 n n CAF H6 JY2 sing 215 n n CAF H7 JY2 sing 216 n n CAG H8 JY2 sing 217 n n CAG H9 JY2 sing 218 n n CAH H10 JY2 sing 219 n n CAH H11 JY2 sing 220 n n N6 H12 JY2 sing 221 n n N6 H13 JY2 sing 222 n n # _atom_sites.entry_id 6RC2 _atom_sites.fract_transf_matrix[1][1] 0.01602 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013082 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008465 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CIT A 1 301 265 CIT CIT . C 3 JY2 A 1 302 1 JY2 3CC . D 4 HOH A 1 401 23 HOH HOH . D 4 HOH A 2 402 40 HOH HOH . D 4 HOH A 3 403 69 HOH HOH . D 4 HOH A 4 404 63 HOH HOH . D 4 HOH A 5 405 73 HOH HOH . D 4 HOH A 6 406 47 HOH HOH . D 4 HOH A 7 407 4 HOH HOH . D 4 HOH A 8 408 50 HOH HOH . D 4 HOH A 9 409 10 HOH HOH . D 4 HOH A 10 410 16 HOH HOH . D 4 HOH A 11 411 11 HOH HOH . D 4 HOH A 12 412 13 HOH HOH . D 4 HOH A 13 413 25 HOH HOH . D 4 HOH A 14 414 9 HOH HOH . D 4 HOH A 15 415 1 HOH HOH . D 4 HOH A 16 416 5 HOH HOH . D 4 HOH A 17 417 3 HOH HOH . D 4 HOH A 18 418 68 HOH HOH . D 4 HOH A 19 419 37 HOH HOH . D 4 HOH A 20 420 7 HOH HOH . D 4 HOH A 21 421 17 HOH HOH . D 4 HOH A 22 422 15 HOH HOH . D 4 HOH A 23 423 32 HOH HOH . D 4 HOH A 24 424 21 HOH HOH . D 4 HOH A 25 425 19 HOH HOH . D 4 HOH A 26 426 28 HOH HOH . D 4 HOH A 27 427 14 HOH HOH . D 4 HOH A 28 428 26 HOH HOH . D 4 HOH A 29 429 62 HOH HOH . D 4 HOH A 30 430 2 HOH HOH . D 4 HOH A 31 431 18 HOH HOH . D 4 HOH A 32 432 8 HOH HOH . D 4 HOH A 33 433 31 HOH HOH . D 4 HOH A 34 434 48 HOH HOH . D 4 HOH A 35 435 52 HOH HOH . D 4 HOH A 36 436 6 HOH HOH . D 4 HOH A 37 437 46 HOH HOH . D 4 HOH A 38 438 57 HOH HOH . D 4 HOH A 39 439 20 HOH HOH . D 4 HOH A 40 440 36 HOH HOH . D 4 HOH A 41 441 44 HOH HOH . D 4 HOH A 42 442 24 HOH HOH . D 4 HOH A 43 443 39 HOH HOH . D 4 HOH A 44 444 33 HOH HOH . D 4 HOH A 45 445 22 HOH HOH . D 4 HOH A 46 446 74 HOH HOH . D 4 HOH A 47 447 27 HOH HOH . D 4 HOH A 48 448 58 HOH HOH . D 4 HOH A 49 449 65 HOH HOH . D 4 HOH A 50 450 42 HOH HOH . D 4 HOH A 51 451 29 HOH HOH . D 4 HOH A 52 452 66 HOH HOH . D 4 HOH A 53 453 34 HOH HOH . D 4 HOH A 54 454 77 HOH HOH . D 4 HOH A 55 455 59 HOH HOH . D 4 HOH A 56 456 43 HOH HOH . D 4 HOH A 57 457 61 HOH HOH . D 4 HOH A 58 458 67 HOH HOH . D 4 HOH A 59 459 55 HOH HOH . D 4 HOH A 60 460 45 HOH HOH . D 4 HOH A 61 461 38 HOH HOH . D 4 HOH A 62 462 72 HOH HOH . D 4 HOH A 63 463 75 HOH HOH . D 4 HOH A 64 464 76 HOH HOH . D 4 HOH A 65 465 71 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 JY2 . . . C 3 21.802 11.485 12.633 1 59.1 ? C2 JY2 302 A 1 HETATM 2 C C4 JY2 . . . C 3 19.498 11.602 12.747 1 64.14 ? C4 JY2 302 A 1 HETATM 3 C C5 JY2 . . . C 3 19.536 12.893 12.233 1 64.05 ? C5 JY2 302 A 1 HETATM 4 C C6 JY2 . . . C 3 20.775 13.446 11.933 1 61.78 ? C6 JY2 302 A 1 HETATM 5 C C8 JY2 . . . C 3 17.49 12.365 12.574 1 63.95 ? C8 JY2 302 A 1 HETATM 6 N N1 JY2 . . . C 3 21.88 12.715 12.146 1 59.46 ? N1 JY2 302 A 1 HETATM 7 C CAA JY2 . . . C 3 14.413 8.188 13.634 1 93.01 ? CAA JY2 302 A 1 HETATM 8 C CAB JY2 . . . C 3 15.966 12.424 12.655 1 64.02 ? CAB JY2 302 A 1 HETATM 9 C CAD JY2 . . . C 3 15.493 8.006 13.219 1 91.24 ? CAD JY2 302 A 1 HETATM 10 C CAF JY2 . . . C 3 16.838 7.784 12.673 1 87.3 ? CAF JY2 302 A 1 HETATM 11 C CAG JY2 . . . C 3 17.472 9.115 12.269 1 81.11 ? CAG JY2 302 A 1 HETATM 12 C CAH JY2 . . . C 3 17.65 10.069 13.458 1 73.87 ? CAH JY2 302 A 1 HETATM 13 N N3 JY2 . . . C 3 20.64 10.924 12.931 1 62.12 ? N3 JY2 302 A 1 HETATM 14 N N6 JY2 . . . C 3 20.866 14.681 11.443 1 60.21 ? N6 JY2 302 A 1 HETATM 15 N N7 JY2 . . . C 3 18.282 13.343 12.139 1 63.95 ? N7 JY2 302 A 1 HETATM 16 N N9 JY2 . . . C 3 18.216 11.319 12.933 1 65.45 ? N9 JY2 302 A 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #