data_6RC5 # _model_server_result.job_id xem1nZw23q4-244f2IAt_g _model_server_result.datetime_utc '2024-11-13 00:29:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rc5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 6RC5 # _exptl.entry_id 6RC5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 187.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 9-ethyl-8-ethynyl-purin-6-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RC5 _cell.length_a 62.594 _cell.length_b 76.043 _cell.length_c 118.562 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RC5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 62.594 0 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 62.594 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H9 N5' _chem_comp.formula_weight 187.201 _chem_comp.id JYB _chem_comp.mon_nstd_flag . _chem_comp.name 9-ethyl-8-ethynyl-purin-6-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N14 C13 JYB sing 193 n n C13 N12 JYB doub 194 n y C13 C05 JYB sing 195 n y N12 C11 JYB sing 196 n y N04 C05 JYB sing 197 n y N04 C03 JYB doub 198 n y C05 C06 JYB doub 199 n y C11 N10 JYB doub 200 n y C03 C02 JYB sing 201 n n C03 N07 JYB sing 202 n y C06 N10 JYB sing 203 n y C06 N07 JYB sing 204 n y C02 C01 JYB trip 205 n n C09 C08 JYB sing 206 n n N07 C08 JYB sing 207 n n C01 H1 JYB sing 208 n n C08 H2 JYB sing 209 n n C08 H3 JYB sing 210 n n C09 H4 JYB sing 211 n n C09 H5 JYB sing 212 n n C09 H6 JYB sing 213 n n C11 H7 JYB sing 214 n n N14 H8 JYB sing 215 n n N14 H9 JYB sing 216 n n # _atom_sites.entry_id 6RC5 _atom_sites.fract_transf_matrix[1][1] 0.015976 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01315 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008434 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CIT A 1 301 265 CIT CIT . C 3 JYB A 1 302 1 JYB LIG . D 4 HOH A 1 401 5 HOH HOH . D 4 HOH A 2 402 21 HOH HOH . D 4 HOH A 3 403 3 HOH HOH . D 4 HOH A 4 404 18 HOH HOH . D 4 HOH A 5 405 19 HOH HOH . D 4 HOH A 6 406 25 HOH HOH . D 4 HOH A 7 407 11 HOH HOH . D 4 HOH A 8 408 13 HOH HOH . D 4 HOH A 9 409 50 HOH HOH . D 4 HOH A 10 410 1 HOH HOH . D 4 HOH A 11 411 4 HOH HOH . D 4 HOH A 12 412 46 HOH HOH . D 4 HOH A 13 413 12 HOH HOH . D 4 HOH A 14 414 34 HOH HOH . D 4 HOH A 15 415 20 HOH HOH . D 4 HOH A 16 416 40 HOH HOH . D 4 HOH A 17 417 26 HOH HOH . D 4 HOH A 18 418 8 HOH HOH . D 4 HOH A 19 419 15 HOH HOH . D 4 HOH A 20 420 31 HOH HOH . D 4 HOH A 21 421 7 HOH HOH . D 4 HOH A 22 422 38 HOH HOH . D 4 HOH A 23 423 9 HOH HOH . D 4 HOH A 24 424 17 HOH HOH . D 4 HOH A 25 425 14 HOH HOH . D 4 HOH A 26 426 2 HOH HOH . D 4 HOH A 27 427 16 HOH HOH . D 4 HOH A 28 428 36 HOH HOH . D 4 HOH A 29 429 52 HOH HOH . D 4 HOH A 30 430 39 HOH HOH . D 4 HOH A 31 431 44 HOH HOH . D 4 HOH A 32 432 6 HOH HOH . D 4 HOH A 33 433 28 HOH HOH . D 4 HOH A 34 434 53 HOH HOH . D 4 HOH A 35 435 48 HOH HOH . D 4 HOH A 36 436 54 HOH HOH . D 4 HOH A 37 437 30 HOH HOH . D 4 HOH A 38 438 24 HOH HOH . D 4 HOH A 39 439 10 HOH HOH . D 4 HOH A 40 440 47 HOH HOH . D 4 HOH A 41 441 35 HOH HOH . D 4 HOH A 42 442 29 HOH HOH . D 4 HOH A 43 443 22 HOH HOH . D 4 HOH A 44 444 27 HOH HOH . D 4 HOH A 45 445 41 HOH HOH . D 4 HOH A 46 446 49 HOH HOH . D 4 HOH A 47 447 51 HOH HOH . D 4 HOH A 48 448 32 HOH HOH . D 4 HOH A 49 449 37 HOH HOH . D 4 HOH A 50 450 55 HOH HOH . D 4 HOH A 51 451 33 HOH HOH . D 4 HOH A 52 452 45 HOH HOH . D 4 HOH A 53 453 43 HOH HOH . D 4 HOH A 54 454 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N12 JYB . . . C 3 22.082 12.498 12.058 1 49.38 ? N12 JYB 302 A 1 HETATM 2 C C13 JYB . . . C 3 20.885 13.131 11.84 1 51.13 ? C13 JYB 302 A 1 HETATM 3 C C01 JYB . . . C 3 14.89 11.77 13.176 1 59.04 ? C01 JYB 302 A 1 HETATM 4 C C02 JYB . . . C 3 16.116 11.846 13.011 1 55.72 ? C02 JYB 302 A 1 HETATM 5 C C03 JYB . . . C 3 17.511 11.934 12.822 1 53.2 ? C03 JYB 302 A 1 HETATM 6 C C05 JYB . . . C 3 19.635 12.531 12.289 1 52.79 ? C05 JYB 302 A 1 HETATM 7 C C06 JYB . . . C 3 19.753 11.26 12.956 1 53.53 ? C06 JYB 302 A 1 HETATM 8 C C08 JYB . . . C 3 17.894 9.741 13.954 1 58.03 ? C08 JYB 302 A 1 HETATM 9 C C09 JYB . . . C 3 17.512 8.557 13.076 1 59.99 ? C09 JYB 302 A 1 HETATM 10 C C11 JYB . . . C 3 22.051 11.29 12.705 1 49.6 ? C11 JYB 302 A 1 HETATM 11 N N04 JYB . . . C 3 18.257 12.907 12.232 1 51.75 ? N04 JYB 302 A 1 HETATM 12 N N07 JYB . . . C 3 18.432 10.932 13.264 1 54.74 ? N07 JYB 302 A 1 HETATM 13 N N10 JYB . . . C 3 20.971 10.621 13.174 1 51.88 ? N10 JYB 302 A 1 HETATM 14 N N14 JYB . . . C 3 20.914 14.343 11.188 1 49.28 ? N14 JYB 302 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #