data_6RC6 # _model_server_result.job_id lb_plVdWf3OQ1lvDAHH4vQ _model_server_result.datetime_utc '2024-11-13 01:46:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rc6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 6RC6 # _exptl.entry_id 6RC6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 273.291 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[6-azanyl-9-[(2~{R})-oxan-2-yl]purin-8-yl]prop-2-yn-1-ol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RC6 _cell.length_a 62.61 _cell.length_b 75.43 _cell.length_c 118.34 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RC6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall 'I 2 2' _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 62.61 0 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 62.61 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H15 N5 O2' _chem_comp.formula_weight 273.291 _chem_comp.id JY5 _chem_comp.mon_nstd_flag . _chem_comp.name 3-[6-azanyl-9-[(2~{R})-oxan-2-yl]purin-8-yl]prop-2-yn-1-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N6 C6 JY5 sing 193 n n C6 N1 JY5 doub 194 n y C6 C5 JY5 sing 195 n y OAT CAS JY5 sing 196 n n N1 C2 JY5 sing 197 n y C5 N7 JY5 sing 198 n y C5 C4 JY5 doub 199 n y N7 C8 JY5 doub 200 n y C2 N3 JY5 doub 201 n y C4 N3 JY5 sing 202 n y C4 N9 JY5 sing 203 n y C8 CAQ JY5 sing 204 n n C8 N9 JY5 sing 205 n y OAP CAO JY5 sing 206 n n OAP CAK JY5 sing 207 n n CAQ CAR JY5 trip 208 n n N9 CAK JY5 sing 209 n n CAR CAS JY5 sing 210 n n CAO CAN JY5 sing 211 n n CAK CAL JY5 sing 212 n n CAN CAM JY5 sing 213 n n CAL CAM JY5 sing 214 n n CAS H1 JY5 sing 215 n n CAS H2 JY5 sing 216 n n C2 H3 JY5 sing 217 n n CAK H4 JY5 sing 218 n n CAL H5 JY5 sing 219 n n CAL H6 JY5 sing 220 n n CAM H7 JY5 sing 221 n n CAM H8 JY5 sing 222 n n CAN H9 JY5 sing 223 n n CAN H10 JY5 sing 224 n n CAO H11 JY5 sing 225 n n CAO H12 JY5 sing 226 n n N6 H13 JY5 sing 227 n n N6 H14 JY5 sing 228 n n OAT H15 JY5 sing 229 n n # _atom_sites.entry_id 6RC6 _atom_sites.fract_transf_matrix[1][1] 0.015972 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013257 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00845 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CIT A 1 301 1 CIT CIT . C 3 JY5 A 1 302 1 JY5 8TO . D 4 HOH A 1 401 44 HOH HOH . D 4 HOH A 2 402 18 HOH HOH . D 4 HOH A 3 403 53 HOH HOH . D 4 HOH A 4 404 89 HOH HOH . D 4 HOH A 5 405 59 HOH HOH . D 4 HOH A 6 406 45 HOH HOH . D 4 HOH A 7 407 62 HOH HOH . D 4 HOH A 8 408 56 HOH HOH . D 4 HOH A 9 409 1 HOH HOH . D 4 HOH A 10 410 43 HOH HOH . D 4 HOH A 11 411 16 HOH HOH . D 4 HOH A 12 412 52 HOH HOH . D 4 HOH A 13 413 35 HOH HOH . D 4 HOH A 14 414 54 HOH HOH . D 4 HOH A 15 415 6 HOH HOH . D 4 HOH A 16 416 33 HOH HOH . D 4 HOH A 17 417 17 HOH HOH . D 4 HOH A 18 418 14 HOH HOH . D 4 HOH A 19 419 24 HOH HOH . D 4 HOH A 20 420 23 HOH HOH . D 4 HOH A 21 421 27 HOH HOH . D 4 HOH A 22 422 2 HOH HOH . D 4 HOH A 23 423 13 HOH HOH . D 4 HOH A 24 424 12 HOH HOH . D 4 HOH A 25 425 88 HOH HOH . D 4 HOH A 26 426 4 HOH HOH . D 4 HOH A 27 427 32 HOH HOH . D 4 HOH A 28 428 48 HOH HOH . D 4 HOH A 29 429 19 HOH HOH . D 4 HOH A 30 430 50 HOH HOH . D 4 HOH A 31 431 31 HOH HOH . D 4 HOH A 32 432 10 HOH HOH . D 4 HOH A 33 433 93 HOH HOH . D 4 HOH A 34 434 3 HOH HOH . D 4 HOH A 35 435 20 HOH HOH . D 4 HOH A 36 436 41 HOH HOH . D 4 HOH A 37 437 37 HOH HOH . D 4 HOH A 38 438 39 HOH HOH . D 4 HOH A 39 439 65 HOH HOH . D 4 HOH A 40 440 5 HOH HOH . D 4 HOH A 41 441 21 HOH HOH . D 4 HOH A 42 442 25 HOH HOH . D 4 HOH A 43 443 57 HOH HOH . D 4 HOH A 44 444 46 HOH HOH . D 4 HOH A 45 445 8 HOH HOH . D 4 HOH A 46 446 86 HOH HOH . D 4 HOH A 47 447 11 HOH HOH . D 4 HOH A 48 448 87 HOH HOH . D 4 HOH A 49 449 9 HOH HOH . D 4 HOH A 50 450 90 HOH HOH . D 4 HOH A 51 451 91 HOH HOH . D 4 HOH A 52 452 7 HOH HOH . D 4 HOH A 53 453 15 HOH HOH . D 4 HOH A 54 454 94 HOH HOH . D 4 HOH A 55 455 28 HOH HOH . D 4 HOH A 56 456 47 HOH HOH . D 4 HOH A 57 457 49 HOH HOH . D 4 HOH A 58 458 36 HOH HOH . D 4 HOH A 59 459 66 HOH HOH . D 4 HOH A 60 460 73 HOH HOH . D 4 HOH A 61 461 61 HOH HOH . D 4 HOH A 62 462 26 HOH HOH . D 4 HOH A 63 463 58 HOH HOH . D 4 HOH A 64 464 55 HOH HOH . D 4 HOH A 65 465 42 HOH HOH . D 4 HOH A 66 466 83 HOH HOH . D 4 HOH A 67 467 22 HOH HOH . D 4 HOH A 68 468 78 HOH HOH . D 4 HOH A 69 469 75 HOH HOH . D 4 HOH A 70 470 76 HOH HOH . D 4 HOH A 71 471 80 HOH HOH . D 4 HOH A 72 472 64 HOH HOH . D 4 HOH A 73 473 74 HOH HOH . D 4 HOH A 74 474 51 HOH HOH . D 4 HOH A 75 475 84 HOH HOH . D 4 HOH A 76 476 71 HOH HOH . D 4 HOH A 77 477 30 HOH HOH . D 4 HOH A 78 478 68 HOH HOH . D 4 HOH A 79 479 79 HOH HOH . D 4 HOH A 80 480 92 HOH HOH . D 4 HOH A 81 481 34 HOH HOH . D 4 HOH A 82 482 38 HOH HOH . D 4 HOH A 83 483 40 HOH HOH . D 4 HOH A 84 484 70 HOH HOH . D 4 HOH A 85 485 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAQ JY5 . . . C 3 16.654 11.014 12.83 0.7 63.9 ? CAQ JY5 302 A 1 HETATM 2 C CAR JY5 . . . C 3 15.46 10.803 12.964 0.7 64.78 ? CAR JY5 302 A 1 HETATM 3 C CAS JY5 . . . C 3 14.024 10.552 13.125 0.7 65.1 ? CAS JY5 302 A 1 HETATM 4 C C2 JY5 . . . C 3 22.448 11.476 12.381 0.7 60.93 ? C2 JY5 302 A 1 HETATM 5 C C4 JY5 . . . C 3 20.191 11.077 12.637 0.7 62.98 ? C4 JY5 302 A 1 HETATM 6 C C5 JY5 . . . C 3 19.865 12.347 12.195 0.7 63.77 ? C5 JY5 302 A 1 HETATM 7 C C6 JY5 . . . C 3 20.881 13.219 11.828 0.7 61.96 ? C6 JY5 302 A 1 HETATM 8 C C8 JY5 . . . C 3 18.048 11.283 12.665 0.7 63.35 ? C8 JY5 302 A 1 HETATM 9 C CAK JY5 . . . C 3 19.032 9.056 13.421 0.7 66.13 ? CAK JY5 302 A 1 HETATM 10 C CAL JY5 . . . C 3 18.766 9.049 14.926 0.7 67.49 ? CAL JY5 302 A 1 HETATM 11 C CAM JY5 . . . C 3 18.741 7.608 15.421 0.7 68.59 ? CAM JY5 302 A 1 HETATM 12 C CAN JY5 . . . C 3 17.633 6.872 14.682 0.7 69.18 ? CAN JY5 302 A 1 HETATM 13 C CAO JY5 . . . C 3 17.945 6.928 13.186 0.7 68.61 ? CAO JY5 302 A 1 HETATM 14 N N1 JY5 . . . C 3 22.199 12.775 11.924 0.7 61.45 ? N1 JY5 302 A 1 HETATM 15 N N3 JY5 . . . C 3 21.463 10.673 12.722 0.7 61.55 ? N3 JY5 302 A 1 HETATM 16 N N6 JY5 . . . C 3 20.613 14.446 11.396 0.7 60.88 ? N6 JY5 302 A 1 HETATM 17 N N7 JY5 . . . C 3 18.542 12.441 12.223 0.7 63.8 ? N7 JY5 302 A 1 HETATM 18 N N9 JY5 . . . C 3 19.062 10.45 12.92 0.7 63.84 ? N9 JY5 302 A 1 HETATM 19 O OAP JY5 . . . C 3 18.007 8.3 12.731 0.7 67.54 ? OAP JY5 302 A 1 HETATM 20 O OAT JY5 . . . C 3 13.398 10.484 11.841 0.7 65.16 ? OAT JY5 302 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 610 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #